Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

1155570 .. 1156990

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATATCTTTGGTCGTGGATTTATGCTGATTAACTCACATTTATTTTACATTTTTATATTACGTAGAACCCAGAATTTTGTTTTGTTTTTTTTTTTTTTTTTTTGGTTTTTGATGGGTTCGAGTGATGGGAAGATTCATCAAGTGACTTCTAATGGCAACATTAAGGAAAGTCCCCTTAAGATCTTTGTGGGTTATGATCCGCGTGAAGATCTCGCATACGAGGTCTGTCGCCATTCAATTTTGAAGCGGTCTTCAATCCCTGTTGAGATCATACCAATCAAACAATCAGAGCTGCGAAAGGAGGGCCTCTATTGGCGTGAACGAGGGCAATTTGAAAGCACCGAGTTCTCTTTTACCCGGTTCTTAACTCCACATTTGGCGAGTTATGAAGGCTTGGCAATGTTTGTGGATTGTGATTTTCTTTACCTTGCAGACATTAAGGAGCTGCGAGACTTGATTGATGATAAGTATGCTATAATGTGTGTTCAACATGATTATACCCCAAAGGAGACAACAAAAATGGATGGAGCAGTGCAAACCGTGTATCCGAGGAAGAACTGGTCTTCCATGGTGTTGTATAACTGTGGGCATCCCAAGAACAAGGTCTTGACACCTGAGGTTGTGAATAAGGAAACGGGTGCTTTTCTTCATAGGTTTCAGTGGCTCGAGGACAATGAAATCGGGTCGATCCCATTTGTATGGAATTTTCTTGAGGGACATAACAAGGTTGTCGAAAATGATCCCCAAACACAACCCAAGGCTGTACACTACACTCGTGGAGGACCGTGGTTTGAGGCTTGGAAGCATTGCGAGTTTGCAGACCTGTGGCTGAACGAGAAGGATGAGTACGTGAAGGAATCAACGAAGAAAACAGCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

34.67

Weight (kDa)

6.38

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	2 cut(s)	203, 250
AclWI	GGATC	3 cut(s)	194, 685, 737
AcsI	RAATTY	2 cut(s)	76, 706
AfaI	GTAC	2 cut(s)	768, 851
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	5 cut(s)	240, 247, 258, 338, 491
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	2 cut(s)	295, 448
AluI	AGCT	2 cut(s)	295, 448
Alw26I	GTCTC	2 cut(s)	447, 506
AlwI	GGATC	3 cut(s)	194, 685, 737
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	295, 448
ApoI	RAATTY	2 cut(s)	76, 706
AspS9I	GGNCC	2 cut(s)	307, 785
AsuC2I	CCSGG	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	785
AxyI	CCTNAGG	1 cut(s)	618
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	2 cut(s)	246, 558
BbvI	GCAGC	2 cut(s)	282, 435
BccI	CCATC	3 cut(s)	109, 122, 521
BciVI	GTATCC	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	447, 506
BfrI	CTTAAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	558
BglII	AGATCT	2 cut(s)	183, 211
BisI	GCNGC	2 cut(s)	296, 449
BlsI	GCNGC	2 cut(s)	297, 450
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	785
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	307, 785
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	601
BpiI	GAAGAC	2 cut(s)	246, 558
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	361
BsaAI	YACGTR	2 cut(s)	65, 853
BsaJI	CCNNGG	4 cut(s)	551, 570, 759, 788
Bse1I	ACTGG	1 cut(s)	566
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	2 cut(s)	408, 808
BseDI	CCNNGG	4 cut(s)	551, 570, 759, 788
BseGI	GGATG	3 cut(s)	532, 592, 850
BseMI	GCAATG	2 cut(s)	408, 808
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	282, 435
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	2 cut(s)	159, 732
BsmAI	GTCTC	2 cut(s)	447, 506
BsmFI	GGGAC	2 cut(s)	159, 732
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	668
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	2 cut(s)	203, 250
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	205
BspPI	GGATC	3 cut(s)	194, 685, 737
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	408, 808
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	4 cut(s)	551, 570, 759, 788
BssMI	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	570, 759
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	3 cut(s)	544, 587, 789
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	766
BstBAI	YACGTR	2 cut(s)	65, 853
BstDEI	CTNAG	2 cut(s)	618, 882
BstDSI	CCRYGG	2 cut(s)	570, 788
BstF5I	GGATG	3 cut(s)	532, 592, 850
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	6 cut(s)	186, 202, 214, 273, 693, 745
BstMAI	GTCTC	2 cut(s)	447, 506
BstMBI	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
BstSCI	CCNGG	1 cut(s)	359
BstSNI	TACGTA	1 cut(s)	65
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	282, 435
BstV2I	GAAGAC	2 cut(s)	246, 558
BstX2I	RGATCY	2 cut(s)	183, 211
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	183, 211
Bsu36I	CCTNAGG	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	2 cut(s)	570, 788
BtsCI	GGATG	3 cut(s)	532, 592, 850
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	540, 668
Cfr13I	GGNCC	2 cut(s)	307, 785
Csp6I	GTAC	2 cut(s)	767, 850
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	2 cut(s)	494, 571
CviJI	RGCY	8 cut(s)	295, 309, 396, 448, 667, 764, 800, 832
CviKI_1	RGCY	8 cut(s)	295, 309, 396, 448, 667, 764, 800, 832
CviQI	GTAC	2 cut(s)	767, 850
DdeI	CTNAG	2 cut(s)	618, 882
DpnI	GATC	6 cut(s)	185, 201, 213, 272, 692, 744
DpnII	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
Eco105I	TACGTA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	570, 759
Eco47I	GGWCC	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	570, 759
ErhI	CCWWGG	2 cut(s)	570, 759
FaeI	CATG	2 cut(s)	497, 574
FaqI	GGGAC	2 cut(s)	159, 732
FatI	CATG	2 cut(s)	493, 570
Fnu4HI	GCNGC	2 cut(s)	296, 449
FokI	GGATG	3 cut(s)	539, 579, 857
Fsp4HI	GCNGC	2 cut(s)	296, 449
GluI	GCNGC	2 cut(s)	296, 449
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	2 cut(s)	497, 574
HinfI	GANTC	2 cut(s)	136, 860
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	2 cut(s)	323, 769
Hpy188I	TCNGA	2 cut(s)	292, 552
Hpy188III	TCNNGA	2 cut(s)	610, 713
Hpy8I	GTNNAC	2 cut(s)	323, 769
HpyAV	CCTTC	3 cut(s)	386, 835, 850
HpyCH4III	ACNGT	3 cut(s)	544, 587, 789
HpyCH4IV	ACGT	2 cut(s)	64, 852
HpyCH4V	TGCA	3 cut(s)	434, 538, 821
HpyF3I	CTNAG	2 cut(s)	618, 882
HpySE526I	ACGT	2 cut(s)	64, 852
Hsp92II	CATG	2 cut(s)	497, 574
Kzo9I	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
LmnI	GCTCC	2 cut(s)	445, 530
LpnPI	CCDG	6 cut(s)	86, 276, 374, 547, 630, 839
Lsp1109I	GCAGC	2 cut(s)	282, 435
LweI	GCATC	1 cut(s)	601
MaeII	ACGT	2 cut(s)	64, 852
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	6 cut(s)	185, 201, 213, 272, 692, 744
MboI	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
MboII	GAAGA	7 cut(s)	145, 221, 246, 558, 568, 641, 880
MflI	RGATCY	2 cut(s)	183, 211
MluCI	AATT	4 cut(s)	76, 240, 332, 706
MseI	TTAA	5 cut(s)	33, 165, 180, 368, 441
MslI	CAYNNNNRTG	1 cut(s)	700
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	205
NciI	CCSGG	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
NlaIII	CATG	2 cut(s)	497, 574
NmuCI	GTSAC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	136, 860
PkrI	GCNGC	2 cut(s)	297, 450
Ppu21I	YACGTR	2 cut(s)	65, 853
PspPI	GGNCC	2 cut(s)	307, 785
PspXI	VCTCGAGB	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	183, 211
RsaI	GTAC	2 cut(s)	768, 851
RsaNI	GTAC	2 cut(s)	767, 850
RseI	CAYNNNNRTG	1 cut(s)	700
SaqAI	TTAA	5 cut(s)	33, 165, 180, 368, 441
SatI	GCNGC	2 cut(s)	296, 449
Sau3AI	GATC	6 cut(s)	183, 199, 211, 270, 690, 742
Sau96I	GGNCC	2 cut(s)	307, 785
ScrFI	CCNGG	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	601
Sfr274I	CTCGAG	1 cut(s)	668
SinI	GGWCC	1 cut(s)	785
SlaI	CTCGAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	700
SmlI	CTYRAG	3 cut(s)	179, 668, 713
SmoI	CTYRAG	3 cut(s)	179, 668, 713
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	76, 240, 332, 706
SsiI	CCGC	2 cut(s)	203, 250
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	570, 759
TaaI	ACNGT	3 cut(s)	544, 587, 789
TaiI	ACGT	2 cut(s)	67, 855
TaqI	TCGA	4 cut(s)	122, 669, 689, 735
TasI	AATT	4 cut(s)	76, 240, 332, 706
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	2 cut(s)	136, 860
Tru1I	TTAA	5 cut(s)	33, 165, 180, 368, 441
Tru9I	TTAA	5 cut(s)	33, 165, 180, 368, 441
TscAI	CASTG	2 cut(s)	540, 668
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	295, 448
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	5 cut(s)	17, 128, 405, 641, 693
TspRI	CASTG	2 cut(s)	540, 668
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	2 cut(s)	76, 706
XhoI	CTCGAG	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.