Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Forward (+)

14297012 .. 14299290

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTTTGAGTGATGGGAAGATTCATCCAGTGAGTTCTAATGGAGACATTAAGGACAAGCCCTTCAAGATCTTTGTGGGTTATGATCCACGTGAAGATCTCGCATATGAAGTCTGTCGCCACTCCATTTTGAAACGATCTTCAATCCCTGTTGAGATCACACCAATCAAACAATCAGATCTGCGGAAGGATGGCCTCTATTGGCGTGAAAGAGGGAAGTTTGAAAGCACCGAGTTCTCTTTTTCTCGGTTCTTGACTCCACATTTGGCCAATTATGAAGGTTGGGCAATGTTTGTGGATTGTGATTTTCTTTACCTTGCTGACATTAAGGAGTTGAGAGACTTGATTGATGAAAAGTATGCTATAATGTGTGTTCAACATGATTATACTCCAAAGGAGACAACGAAAATGGATGGAGCAGTGCAAACTGTGTATCCAAGGAAGAACTGGTCTTCCATGGTGTTGTATAATTGTGGGCATCCCAAGAACAAGGTTTTGACACCTGAGGTTGTGAACACAGAAACAGGTGCTTTTCTTCATAGGTTTTCATGGCTTGAGGATGGTGAAATTGGGTCCATCCCATTCGTTTGGAATTTTCTTGAGGGACATAACAAGGTTGTTGAAAATGATCCCCAAACACGCCCCAAGGCTGTACACTATACTCGTGGAGGACCATGGTTTGAGGCTTGGAAGAATTGTGAGTTTGCAGACCTGTGGTTGAATGAGATGGAGGAGTGCACGCAGGAAACAAAGAAGAAAACTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.88

Weight (kDa)

5.67

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	80, 623
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	592
AcvI	CACGTG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	654
AgsI	TTSAA	7 cut(s)	67, 133, 144, 224, 377, 623, 721
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
Alw21I	GWGCWC	1 cut(s)	740
Alw26I	GTCTC	3 cut(s)	39, 333, 392
Alw44I	GTGCAC	1 cut(s)	736
AlwI	GGATC	2 cut(s)	80, 623
AoxI	GGCC	2 cut(s)	193, 267
ApaLI	GTGCAC	1 cut(s)	736
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspS9I	GGNCC	2 cut(s)	573, 671
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	573, 671
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	269
BauI	CACGAG	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	740
BccI	CCATC	6 cut(s)	8, 185, 407, 554, 584, 721
BciVI	GTATCC	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	39, 333, 392
BfuI	GTATCC	1 cut(s)	444
BglII	AGATCT	3 cut(s)	69, 97, 178
Bme18I	GGWCC	2 cut(s)	573, 671
BmgT120I	GGNCC	2 cut(s)	573, 671
BmiI	GGNNCC	1 cut(s)	574
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	575, 620
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	437, 456, 645, 674
Bse1I	ACTGG	2 cut(s)	29, 452
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	437, 456, 645, 674
BseGI	GGATG	6 cut(s)	25, 196, 418, 478, 565, 576
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	29, 452
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	740
BshFI	GGCC	2 cut(s)	195, 269
BsiHKAI	GWGCWC	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	618
BsmAI	GTCTC	3 cut(s)	39, 333, 392
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	195, 269
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
Bsp19I	CCATGG	2 cut(s)	456, 674
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	195, 269
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	80, 623
BsrDI	GCAATG	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	29, 452
BssECI	CCNNGG	4 cut(s)	437, 456, 645, 674
BssMI	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	4 cut(s)	437, 456, 645, 674
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	430
BstAUI	TGTACA	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	2 cut(s)	456, 674
BstF5I	GGATG	6 cut(s)	25, 196, 418, 478, 565, 576
BstKTI	GATC	7 cut(s)	72, 88, 100, 140, 159, 181, 631
BstMAI	GTCTC	3 cut(s)	39, 333, 392
BstMBI	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
BstSLI	GKGCMC	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	3 cut(s)	69, 97, 178
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	3 cut(s)	69, 97, 178
Bsu36I	CCTNAGG	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	195, 269
BtgI	CCRYGG	2 cut(s)	456, 674
BtsCI	GGATG	6 cut(s)	25, 196, 418, 478, 565, 576
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	36, 426
Cac8I	GCNNGC	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	573, 671
Csp6I	GTAC	1 cut(s)	653
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	4 cut(s)	380, 457, 549, 675
CviJI	RGCY	6 cut(s)	61, 195, 269, 553, 650, 686
CviKI_1	RGCY	6 cut(s)	61, 195, 269, 553, 650, 686
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	7 cut(s)	71, 87, 99, 139, 158, 180, 630
DpnII	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	4 cut(s)	437, 456, 645, 674
Eco47I	GGWCC	2 cut(s)	573, 671
Eco72I	CACGTG	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	504
EcoT14I	CCWWGG	4 cut(s)	437, 456, 645, 674
ErhI	CCWWGG	4 cut(s)	437, 456, 645, 674
FaeI	CATG	4 cut(s)	383, 460, 552, 678
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	4 cut(s)	379, 456, 548, 674
FauNDI	CATATG	1 cut(s)	106
FokI	GGATG	6 cut(s)	12, 203, 425, 465, 563, 572
HaeIII	GGCC	2 cut(s)	195, 269
Hin1II	CATG	4 cut(s)	383, 460, 552, 678
HinfI	GANTC	2 cut(s)	22, 256
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	3 cut(s)	514, 655, 738
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	67, 253, 599
Hpy8I	GTNNAC	3 cut(s)	514, 655, 738
HpyAV	CCTTC	3 cut(s)	73, 181, 272
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	424, 707, 738
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	383, 460, 552, 678
Kzo9I	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	7 cut(s)	42, 162, 433, 510, 516, 725, 728
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	91
MalI	GATC	7 cut(s)	71, 87, 99, 139, 158, 180, 630
MboI	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
MboII	GAAGA	8 cut(s)	31, 107, 132, 444, 454, 527, 703, 766
MflI	RGATCY	3 cut(s)	69, 97, 178
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	6 cut(s)	271, 469, 567, 592, 694, 766
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	206, 206, 499, 550, 595, 662, 676, 724
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	51, 327
Msp20I	TGGCCA	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	456, 674
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
NlaIII	CATG	4 cut(s)	383, 460, 552, 678
NlaIV	GGNNCC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	2 cut(s)	573, 671
PsuI	RGATCY	3 cut(s)	69, 97, 178
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	51, 327
Sau3AI	GATC	7 cut(s)	69, 85, 97, 137, 156, 178, 628
Sau96I	GGNCC	2 cut(s)	573, 671
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	2 cut(s)	573, 671
SmlI	CTYRAG	2 cut(s)	554, 599
SmoI	CTYRAG	2 cut(s)	554, 599
Sse9I	AATT	6 cut(s)	271, 469, 567, 592, 694, 766
SsiI	CCGC	1 cut(s)	184
StyI	CCWWGG	4 cut(s)	437, 456, 645, 674
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	94
TasI	AATT	6 cut(s)	271, 469, 567, 592, 694, 766
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	51, 327
Tru9I	TTAA	2 cut(s)	51, 327
TscAI	CASTG	2 cut(s)	36, 426
TspDTI	ATGAA	6 cut(s)	14, 123, 291, 366, 527, 537
TspRI	CASTG	2 cut(s)	36, 426
VneI	GTGCAC	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	573, 671
XapI	RAATTY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.