Rorug03G0121900
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009420
Physical Location & Seq
Forward (+)
9840422 .. 9843431
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0121900.1

Sequence Viewer

Length: 951 bp
ATGGGGAAAGCTTCAAGAGATAAGAGGGATATCTACTACCGAAAAGCCAAAGAAGAAGGCTGGCGAGCTCGGAGTGCCTTCAAGCTTCTTCAGATTGACGAGGAATTCAATATCTTCGATGGAGTGAAGCGCGTCGTCGATCTCTGTGCTGCCCCTGGTAGCTGGAGTCAGGTTTTGAGTAGGAAATTGTATCTGCCGGCAAAGCTTTCGTCGGATTCTAAGGACGGGGATGTGCCCCTTATTGTAGCTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAGGGTGATATAACGAATGCACGAACCGCCGAAGTAGTCATCAGACATTTTGATGGTTGCAAGGCTGATCTGGTTGTGTGTGATGGTGCTCCAGATGTTACCGGCCTTCATGACATGGATGAATTTGTTCAATCCCAGCTGATACTAGCAGGCTTAACTATTGTTACTCATGTACTTAAAGAAGGTGGTAAATTTATTGCAAAGATATTCCGTGGAAAAGATACTAGCCTTCTCTATTGTCAGCTGAAAGTATTTTTTCCGATTGTGACTTTTGCAAAACCAAAAAGCAGCCGCAATTCCAGCATAGAGGCATTTGCAGTTTGTGAGAATTATTCTCCTCCTGAGGGATTCAACCCTAAGGATCTGCATCGCCTCCTAGAAAAGGTAGGAAGTCCCTCAGGAGCAGATGATCTAGATTGCAGTAGTGGGTGGTTGGAAGGACCGAATAAGGTGTATATCCCATTTTTAGCTTGTGGTGACCTCAGAGGGTATGATTCTGACCGTTCATATCCGCTGCCAAAAGATGCCAATGGAGCTTACCGAAGCTTGGATCCTGTACAGCCCCCAATTGCCCCTCCTTATAAGAGAGCTCTTGAACTGAAGAAAGCTTCCAGCCAGGGAATCACCGAGCTTGAGAATCACTCCCTGGAATCCTGA

Protein Analysis

316

Amino Acids

34.81

Weight (kDa)

6.02

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsJ PF01728 21 - 209 8.9e-50 FtsJ-like methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 321, 586, 806
AclWI GGATC 3 cut(s) 663, 839, 852
AcsI RAATTY 3 cut(s) 104, 416, 485
AcuI CTGAAG 2 cut(s) 74, 914
AfaI GTAC 2 cut(s) 468, 852
AfiI CCNNNNNNNGG 4 cut(s) 278, 638, 676, 841
AgsI TTSAA 8 cut(s) 15, 82, 109, 278, 290, 425, 646, 890
AjnI CCWGG 3 cut(s) 154, 909, 939
Alw21I GWGCWC 3 cut(s) 70, 385, 886
AlwI GGATC 3 cut(s) 663, 839, 852
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 4 cut(s) 149, 259, 582, 808
ApoI RAATTY 3 cut(s) 104, 416, 485
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 3 cut(s) 311, 782, 910
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 3 cut(s) 636, 651, 691
BaeGI GKGCMC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 844
BanII GRGCYC 2 cut(s) 70, 886
Bbv12I GWGCWC 3 cut(s) 70, 385, 886
BbvI GCAGC 4 cut(s) 136, 271, 594, 795
BccI CCATC 3 cut(s) 113, 341, 371
BcgI CGANNNNNNTGC 4 cut(s) 128, 162, 189, 223
BciT130I CCWGG 3 cut(s) 156, 911, 941
BfaI CTAG 4 cut(s) 440, 519, 671, 707
BisI GCNGC 5 cut(s) 150, 260, 583, 586, 809
BlsI GCNGC 5 cut(s) 151, 261, 584, 587, 810
Bme1390I CCNGG 3 cut(s) 156, 911, 941
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 2 cut(s) 270, 846
BmrFI CCNGG 3 cut(s) 156, 911, 941
BmsI GCATC 2 cut(s) 670, 808
BplI GAGNNNNNCTC 1 cut(s) 920
BpmI CTGGAG 2 cut(s) 184, 369
BpuEI CTTGAG 1 cut(s) 947
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 5 cut(s) 154, 264, 505, 910, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 638, 676, 841
Bse118I RCCGGY 2 cut(s) 196, 395
Bse21I CCTNAGG 3 cut(s) 636, 651, 691
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 3 cut(s) 156, 911, 941
BseDI CCNNGG 5 cut(s) 154, 264, 505, 910, 939
BseGI GGATG 2 cut(s) 235, 418
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 4 cut(s) 278, 638, 676, 841
BseMII CTCAG 3 cut(s) 627, 705, 790
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 4 cut(s) 136, 271, 594, 795
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 399
BsiHKAI GWGCWC 3 cut(s) 70, 385, 886
BsiSI CCGG 2 cut(s) 197, 396
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 4 cut(s) 278, 638, 676, 841
BsmFI GGGAC 1 cut(s) 672
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 1 cut(s) 399
Bsp1286I GDGCHC 4 cut(s) 70, 237, 385, 886
Bsp1407I TGTACA 1 cut(s) 850
Bsp143I GATC 5 cut(s) 139, 361, 655, 703, 844
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 3 cut(s) 321, 586, 806
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 3 cut(s) 628, 704, 789
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 270, 846
BspPI GGATC 3 cut(s) 663, 839, 852
BsrFI RCCGGY 2 cut(s) 196, 395
BsrGI TGTACA 1 cut(s) 850
BssAI RCCGGY 2 cut(s) 196, 395
BssECI CCNNGG 5 cut(s) 154, 264, 505, 910, 939
BssMI GATC 5 cut(s) 139, 361, 655, 703, 844
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 156, 911, 941
Bst4CI ACNGT 1 cut(s) 797
BstAUI TGTACA 1 cut(s) 850
BstC8I GCNNGC 4 cut(s) 62, 66, 198, 445
BstDEI CTNAG 5 cut(s) 219, 636, 651, 691, 776
BstDSI CCRYGG 2 cut(s) 264, 505
BstEII GGTNACC 1 cut(s) 770
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 235, 418
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 5 cut(s) 142, 364, 658, 706, 847
BstMBI GATC 5 cut(s) 139, 361, 655, 703, 844
BstMWI GCNNNNNNNGC 5 cut(s) 74, 202, 320, 594, 827
BstNI CCWGG 3 cut(s) 156, 911, 941
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 3 cut(s) 154, 909, 939
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 136, 271, 594, 795
BstX2I RGATCY 2 cut(s) 655, 844
BstYI RGATCY 2 cut(s) 655, 844
Bsu36I CCTNAGG 3 cut(s) 636, 651, 691
BsuRI GGCC 1 cut(s) 399
BtgI CCRYGG 2 cut(s) 264, 505
BtgZI GCGATG 1 cut(s) 647
BtsCI GGATG 2 cut(s) 235, 418
Cac8I GCNNGC 4 cut(s) 62, 66, 198, 445
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 2 cut(s) 196, 395
Cfr13I GGNCC 1 cut(s) 734
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 467, 851
CviAII CATG 4 cut(s) 265, 404, 409, 464
CviQI GTAC 2 cut(s) 467, 851
DdeI CTNAG 5 cut(s) 219, 636, 651, 691, 776
DpnI GATC 5 cut(s) 141, 363, 657, 705, 846
DpnII GATC 5 cut(s) 139, 361, 655, 703, 844
Ecl136II GAGCTC 2 cut(s) 68, 884
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 2 cut(s) 70, 886
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 734
Eco53kI GAGCTC 2 cut(s) 68, 884
Eco57I CTGAAG 2 cut(s) 74, 914
Eco81I CCTNAGG 3 cut(s) 636, 651, 691
Eco91I GGTNACC 1 cut(s) 770
EcoICRI GAGCTC 2 cut(s) 68, 884
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 154, 909, 939
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 2 cut(s) 70, 886
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 4 cut(s) 268, 407, 412, 467
FaqI GGGAC 1 cut(s) 672
FatI CATG 4 cut(s) 264, 403, 408, 463
Fnu4HI GCNGC 5 cut(s) 150, 260, 583, 586, 809
FokI GGATG 2 cut(s) 242, 425
FriOI GRGCYC 2 cut(s) 70, 886
Fsp4HI GCNGC 5 cut(s) 150, 260, 583, 586, 809
FspBI CTAG 4 cut(s) 440, 519, 671, 707
GlaI GCGC 1 cut(s) 131
GluI GCNGC 5 cut(s) 150, 260, 583, 586, 809
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 2 cut(s) 184, 369
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 197, 396
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 268, 407, 412, 467
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 5 cut(s) 9, 83, 203, 838, 900
HinfI GANTC 7 cut(s) 166, 215, 642, 788, 915, 931, 944
HpaII CCGG 2 cut(s) 197, 396
HphI GGTGA 3 cut(s) 311, 782, 910
Hpy188I TCNGA 7 cut(s) 72, 93, 214, 338, 555, 779, 793
Hpy188III TCNNGA 8 cut(s) 15, 386, 404, 635, 693, 707, 887, 948
Hpy99I CGWCG 3 cut(s) 137, 140, 214
HpyAV CCTTC 7 cut(s) 50, 88, 272, 410, 470, 533, 725
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4V TGCA 9 cut(s) 259, 295, 314, 354, 494, 569, 611, 661, 714
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 202, 320, 594, 827
HpyF3I CTNAG 5 cut(s) 219, 636, 651, 691, 776
Hsp92II CATG 4 cut(s) 268, 407, 412, 467
HspAI GCGC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 139, 361, 655, 703, 844
LmnI GCTCC 4 cut(s) 274, 388, 695, 827
Lsp1109I GCAGC 4 cut(s) 136, 271, 594, 795
LweI GCATC 2 cut(s) 670, 808
MaeI CTAG 4 cut(s) 440, 519, 671, 707
MaeIII GTNAC 4 cut(s) 391, 457, 559, 770
MalI GATC 5 cut(s) 141, 363, 657, 705, 846
MboI GATC 5 cut(s) 139, 361, 655, 703, 844
MboII GAAGA 4 cut(s) 65, 80, 106, 907
MfeI CAATTG 2 cut(s) 273, 861
MflI RGATCY 2 cut(s) 655, 844
MhlI GDGCHC 4 cut(s) 70, 237, 385, 886
MluCI AATT 8 cut(s) 104, 185, 273, 416, 485, 589, 622, 861
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 192, 708
MroNI GCCGGC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 449, 471
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 3 cut(s) 433, 538, 808
MspI CCGG 2 cut(s) 197, 396
MspR9I CCNGG 3 cut(s) 156, 911, 941
MunI CAATTG 2 cut(s) 273, 861
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 3 cut(s) 156, 911, 941
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 74, 202, 320, 594, 827
NaeI GCCGGC 1 cut(s) 198
NcoI CCATGG 1 cut(s) 264
NdeII GATC 5 cut(s) 139, 361, 655, 703, 844
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 4 cut(s) 268, 407, 412, 467
NlaIV GGNNCC 2 cut(s) 270, 846
NmuCI GTSAC 2 cut(s) 559, 770
PagI TCATGA 1 cut(s) 403
PctI GAATGC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 6 cut(s) 215, 642, 788, 915, 931, 944
PkrI GCNGC 5 cut(s) 151, 261, 584, 587, 810
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PsiI TTATAA 1 cut(s) 876
Psp124BI GAGCTC 2 cut(s) 70, 886
Psp6I CCWGG 3 cut(s) 154, 909, 939
PspEI GGTNACC 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 3 cut(s) 154, 909, 939
PspN4I GGNNCC 2 cut(s) 270, 846
PspPI GGNCC 1 cut(s) 734
PsuI RGATCY 2 cut(s) 655, 844
PvuII CAGCTG 2 cut(s) 433, 538
RsaI GTAC 2 cut(s) 468, 852
RsaNI GTAC 2 cut(s) 467, 851
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 2 cut(s) 70, 886
SaqAI TTAA 2 cut(s) 449, 471
SatI GCNGC 5 cut(s) 150, 260, 583, 586, 809
Sau3AI GATC 5 cut(s) 139, 361, 655, 703, 844
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 3 cut(s) 156, 911, 941
SduI GDGCHC 4 cut(s) 70, 237, 385, 886
SfaNI GCATC 2 cut(s) 670, 808
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 8 cut(s) 104, 185, 273, 416, 485, 589, 622, 861
SsiI CCGC 3 cut(s) 321, 586, 806
SspMI CTAG 4 cut(s) 440, 519, 671, 707
SstI GAGCTC 2 cut(s) 70, 886
StyD4I CCNGG 3 cut(s) 154, 909, 939
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 797
TaqI TCGA 2 cut(s) 117, 138
TaqII GACCGA 1 cut(s) 751
TasI AATT 8 cut(s) 104, 185, 273, 416, 485, 589, 622, 861
TatI WGTACW 2 cut(s) 466, 850
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 6 cut(s) 215, 642, 788, 915, 931, 944
Tru1I TTAA 2 cut(s) 449, 471
Tru9I TTAA 2 cut(s) 449, 471
TseFI GTSAC 2 cut(s) 559, 770
TseI GCWGC 4 cut(s) 149, 259, 582, 808
Tsp45I GTSAC 2 cut(s) 559, 770
TspDTI ATGAA 3 cut(s) 392, 429, 789
TspGWI ACGGA 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 3 cut(s) 104, 416, 485
XbaI TCTAGA 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 440, 519, 671, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.