Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

17629855 .. 17632077

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTAGCGAAGGGAAGGTTCATCCAGTGACTTCCAATGGAGATTTAACTAAGAAGCCCTTTAAGATCTTTGTGGGTTATGATCCACGTGAAGATCTCGCATATGAGGTCTGTCGCCAGTCAATATTGAAGCGATCCTCAATCCCTGTTGAGATTGTACCAATCAAACAATCGGAGCTGAGAAAGAACGGCCTCTACTGGCGTGAAAGAGGGCAGTTTGAGAGCACCGAGTTTTCTTTCACTCGGTTCTTGACTCCACATTTGGCCAACTACGATGGTTGGGCAATGTTTGTGGACTGTGATTTTCTTTACCTTGCTGACATTAAGGAACTCACGGATTTGATTGATGATAAGTACGCTATAATGTGTGTTCAACATGATTATACACCAAAGGAGACAACAAAGATGGATGGAGCGGTGCAAACTGTGTACCCGAGGAAGAACTGGTCTTCCATGGTCTTGTATAACTCTGGCCATCCCAAGAACAAGGTCCTGACACCTGAGGTTGTGAATAAGGAAACGGGTGCTTTCCTTCATAGGTTTCAGTGGCTTGAGGATGGTGAAATTGGGTCCATCCCGTTTGTTTGGAACTTTCTTGAGGGACATAACCAGGTTGTTGAAAATGATCCCACAACTTTTCCCAAGTCGATTCACTATACTCGGGGAGGACCATGGTTTGAGGCCTGGAAGCATTGTGAGTTTGCAGACCTATGGTTAAAGGAGATGGAGGAGTACAAGCAGGAAGCACAGAAGAAAGTTGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.85

Weight (kDa)

5.8

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	416
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	3 cut(s)	77, 129, 620
AcoI	YGGCCR	2 cut(s)	264, 472
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	4 cut(s)	159, 356, 431, 734
AgsI	TTSAA	4 cut(s)	130, 374, 620, 761
AjnI	CCWGG	2 cut(s)	609, 683
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	77, 129, 620
Ama87I	CYCGRG	2 cut(s)	433, 660
AoxI	GGCC	4 cut(s)	190, 264, 472, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspS9I	GGNCC	3 cut(s)	490, 570, 668
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	2 cut(s)	433, 660
AvaII	GGWCC	3 cut(s)	490, 570, 668
AxyI	CCTNAGG	1 cut(s)	501
BalI	TGGCCA	2 cut(s)	266, 474
BbrPI	CACGTG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	227
BccI	CCATC	7 cut(s)	269, 400, 404, 483, 551, 581, 718
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	2 cut(s)	611, 685
BcoDI	GTCTC	1 cut(s)	389
BglII	AGATCT	2 cut(s)	66, 94
Bme1390I	CCNGG	2 cut(s)	611, 685
Bme18I	GGWCC	3 cut(s)	490, 570, 668
BmeT110I	CYCGRG	2 cut(s)	433, 660
BmgT120I	GGNCC	3 cut(s)	490, 570, 668
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	2 cut(s)	611, 685
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	572, 617
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	434, 453, 671
Bse1I	ACTGG	4 cut(s)	26, 118, 203, 449
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	611, 685
BseDI	CCNNGG	3 cut(s)	434, 453, 671
BseGI	GGATG	5 cut(s)	22, 415, 475, 562, 573
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	170, 492
BseNI	ACTGG	4 cut(s)	26, 118, 203, 449
BseRI	GAGGAG	1 cut(s)	743
BshFI	GGCC	4 cut(s)	192, 266, 474, 683
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	2 cut(s)	433, 660
BslFI	GGGAC	1 cut(s)	615
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	4 cut(s)	192, 266, 474, 683
BsoBI	CYCGRG	2 cut(s)	433, 660
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	5 cut(s)	66, 82, 94, 134, 625
Bsp19I	CCATGG	2 cut(s)	453, 671
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	4 cut(s)	192, 266, 474, 683
BspCNI	CTCAG	2 cut(s)	171, 493
BspLI	GGNNCC	1 cut(s)	571
BspPI	GGATC	3 cut(s)	77, 129, 620
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	26, 118, 203, 449
BssECI	CCNNGG	3 cut(s)	434, 453, 671
BssMI	GATC	5 cut(s)	66, 82, 94, 134, 625
BssT1I	CCWWGG	2 cut(s)	453, 671
Bst2UI	CCWGG	2 cut(s)	611, 685
Bst4CI	ACNGT	2 cut(s)	299, 427
BstBAI	YACGTR	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	51, 179, 501
BstDSI	CCRYGG	2 cut(s)	453, 671
BstF5I	GGATG	5 cut(s)	22, 415, 475, 562, 573
BstKTI	GATC	5 cut(s)	69, 85, 97, 137, 628
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	5 cut(s)	66, 82, 94, 134, 625
BstNI	CCWGG	2 cut(s)	611, 685
BstSCI	CCNGG	2 cut(s)	609, 683
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	66, 94
BstYI	RGATCY	2 cut(s)	66, 94
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	192, 266, 474, 683
BtgI	CCRYGG	2 cut(s)	453, 671
BtsCI	GGATG	5 cut(s)	22, 415, 475, 562, 573
BtsIMutI	CAGTG	2 cut(s)	33, 551
Cfr13I	GGNCC	3 cut(s)	490, 570, 668
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	4 cut(s)	158, 355, 430, 733
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	377, 454, 672
CviJI	RGCY	7 cut(s)	58, 178, 192, 266, 474, 550, 683
CviKI_1	RGCY	7 cut(s)	58, 178, 192, 266, 474, 550, 683
CviQI	GTAC	4 cut(s)	158, 355, 430, 733
DdeI	CTNAG	3 cut(s)	51, 179, 501
DpnI	GATC	5 cut(s)	68, 84, 96, 136, 627
DpnII	GATC	5 cut(s)	66, 82, 94, 134, 625
EaeI	YGGCCR	2 cut(s)	264, 472
Eco130I	CCWWGG	2 cut(s)	453, 671
Eco147I	AGGCCT	1 cut(s)	683
Eco47I	GGWCC	3 cut(s)	490, 570, 668
Eco72I	CACGTG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	433, 660
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	609, 683
EcoT14I	CCWWGG	2 cut(s)	453, 671
ErhI	CCWWGG	2 cut(s)	453, 671
FaeI	CATG	3 cut(s)	380, 457, 675
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	3 cut(s)	376, 453, 671
FauNDI	CATATG	1 cut(s)	103
FokI	GGATG	5 cut(s)	9, 422, 462, 560, 569
HaeIII	GGCC	4 cut(s)	192, 266, 474, 683
Hin1II	CATG	3 cut(s)	380, 457, 675
HinfI	GANTC	2 cut(s)	253, 649
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	295, 430
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	250, 493, 596
Hpy8I	GTNNAC	2 cut(s)	295, 430
HpyAV	CCTTC	3 cut(s)	5, 10, 542
HpyCH4III	ACNGT	2 cut(s)	299, 427
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	421, 704
HpyF3I	CTNAG	3 cut(s)	51, 179, 501
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	380, 457, 675
Kzo9I	GATC	5 cut(s)	66, 82, 94, 134, 625
LmnI	GCTCC	2 cut(s)	175, 413
MabI	ACCWGGT	1 cut(s)	609
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	5 cut(s)	68, 84, 96, 136, 627
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	5 cut(s)	66, 82, 94, 134, 625
MboII	GAAGA	4 cut(s)	104, 441, 451, 763
MflI	RGATCY	2 cut(s)	66, 94
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	2 cut(s)	266, 474
MluCI	AATT	1 cut(s)	564
MluNI	TGGCCA	2 cut(s)	266, 474
MlyI	GAGTC	1 cut(s)	247
Mox20I	TGGCCA	2 cut(s)	266, 474
MscI	TGGCCA	2 cut(s)	266, 474
MseI	TTAA	4 cut(s)	47, 63, 324, 716
Msp20I	TGGCCA	2 cut(s)	266, 474
MspR9I	CCNGG	2 cut(s)	611, 685
MvaI	CCWGG	2 cut(s)	611, 685
NcoI	CCATGG	2 cut(s)	453, 671
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	5 cut(s)	66, 82, 94, 134, 625
NlaIII	CATG	3 cut(s)	380, 457, 675
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	609, 683
PspCI	CACGTG	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	609, 683
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	3 cut(s)	490, 570, 668
PspPPI	RGGWCCY	1 cut(s)	490
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PsuI	RGATCY	2 cut(s)	66, 94
RsaI	GTAC	4 cut(s)	159, 356, 431, 734
RsaNI	GTAC	4 cut(s)	158, 355, 430, 733
SaqAI	TTAA	4 cut(s)	47, 63, 324, 716
Sau3AI	GATC	5 cut(s)	66, 82, 94, 134, 625
Sau96I	GGNCC	3 cut(s)	490, 570, 668
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	611, 685
SduI	GDGCHC	1 cut(s)	227
SexAI	ACCWGGT	1 cut(s)	609
SinI	GGWCC	3 cut(s)	490, 570, 668
SmlI	CTYRAG	2 cut(s)	551, 596
SmoI	CTYRAG	2 cut(s)	551, 596
Sse9I	AATT	1 cut(s)	564
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	1 cut(s)	416
SspI	AATATT	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	2 cut(s)	609, 683
StyI	CCWWGG	2 cut(s)	453, 671
TaaI	ACNGT	2 cut(s)	299, 427
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	647
TasI	AATT	1 cut(s)	564
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	4 cut(s)	47, 63, 324, 716
Tru9I	TTAA	4 cut(s)	47, 63, 324, 716
TscAI	CASTG	2 cut(s)	33, 551
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	11, 524
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	33, 551
VpaK11BI	GGWCC	3 cut(s)	490, 570, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.