Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

1668463 .. 1670645

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1017300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGGGTTCGAGTGATGGGAAGATTCATCCAGCGACTTGTAATGGGAACATTAAGGAAACCCCCTTTAAGATCTTTGTGGGTTATGATCCGCGTGAAGATCTCGCATATGAGGTCTGTCGCCACTCAATTTCGAAGCGGTCTTCAATCCCTGTTGAGATCATACCAATCAAACAATCAGAGCTGCGAAAGGAGGGCCTCTATTGGCGTGAACGAGGGCAATTTGAAAGCACCGAGTTCTCTTTTTCCCGGTTCTTGACGCCACATTTGGCGAGTTACGAAGGCTGGGCAATGTTTGTGGATTGTGATTTTCTTTACCTTGCTGACATTAAGGAGCTTCGAGACTTGATTGACGATAAGTATGCTGTAATGTGTGTTCAACATGATTATACCCCGAAGGAGACAACAAAAATGGATGGAGCAGTGCAAACCGTGTATCCGAGGAAGAACTGGTCTTCCATGGTGTTGTATAACTGTGGGCATCCCAAGAACAAGGTCTTGACACCCGAGGTTGTGAATAAGGAAACGGGTGCTTTTCTTCATAGGTTTCAGTGGCTCGAGGACAATGAAATCGGGTCGATCCCATTTGTATGGAATTTTCTTGAGGGACATAACAAGGTTGTCGAAAATGATCCCCAAACACAACCCAAGGCTGTACACTACACTCGTGGAGGACCGTGGTTTGAGGCTTGGAAGCATTGCGAGTTTGCCGACCTGTGGTTGAACGAGAAGGAGGATTACGTGAAGGAATCAACGAAGAAAACAGAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

30.01

Weight (kDa)

5.76

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	92, 139
AclWI	GGATC	3 cut(s)	83, 574, 626
AcsI	RAATTY	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	4 cut(s)	147, 227, 380, 724
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	184, 337
AluI	AGCT	2 cut(s)	184, 337
Alw26I	GTCTC	3 cut(s)	336, 395, 761
AlwI	GGATC	3 cut(s)	83, 574, 626
Ama87I	CYCGRG	2 cut(s)	506, 557
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	2 cut(s)	196, 674
AsuC2I	CCSGG	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	134
AvaI	CYCGRG	2 cut(s)	506, 557
AvaII	GGWCC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	2 cut(s)	135, 447
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	11, 410
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciVI	GTATCC	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	336, 395, 761
BfuI	GTATCC	1 cut(s)	447
BglII	AGATCT	2 cut(s)	72, 100
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	2 cut(s)	506, 557
BmgT120I	GGNCC	2 cut(s)	196, 674
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	135, 447
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	742
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	5 cut(s)	440, 459, 507, 648, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	297, 697
BseDI	CCNNGG	5 cut(s)	440, 459, 507, 648, 677
BseGI	GGATG	3 cut(s)	28, 421, 481
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMI	GCAATG	2 cut(s)	297, 697
BseNI	ACTGG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	506, 557
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	3 cut(s)	336, 395, 761
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	506, 557
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	92, 139
BspANI	GGCC	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	94
BspPI	GGATC	3 cut(s)	83, 574, 626
BspT104I	TTCGAA	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	297, 697
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	5 cut(s)	440, 459, 507, 648, 677
BssMI	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
BssNI	GRCGYC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	2 cut(s)	459, 648
Bst2BI	CACGAG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	433, 476, 678
BstACI	GRCGYC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	655
BstBAI	YACGTR	1 cut(s)	742
BstBI	TTCGAA	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	459, 677
BstF5I	GGATG	3 cut(s)	28, 421, 481
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	6 cut(s)	75, 91, 103, 162, 582, 634
BstMAI	GTCTC	3 cut(s)	336, 395, 761
BstMBI	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
BstSCI	CCNGG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	2 cut(s)	135, 447
BstX2I	RGATCY	2 cut(s)	72, 100
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	2 cut(s)	72, 100
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	2 cut(s)	459, 677
BtsCI	GGATG	3 cut(s)	28, 421, 481
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 557
Cfr13I	GGNCC	2 cut(s)	196, 674
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	656
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	2 cut(s)	383, 460
CviJI	RGCY	7 cut(s)	184, 198, 285, 337, 556, 653, 689
CviKI_1	RGCY	7 cut(s)	184, 198, 285, 337, 556, 653, 689
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	6 cut(s)	74, 90, 102, 161, 581, 633
DpnII	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
Eco130I	CCWWGG	2 cut(s)	459, 648
Eco47I	GGWCC	1 cut(s)	674
Eco88I	CYCGRG	2 cut(s)	506, 557
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	459, 648
ErhI	CCWWGG	2 cut(s)	459, 648
FaeI	CATG	2 cut(s)	386, 463
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	2 cut(s)	382, 459
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	15, 428, 468
Fsp4HI	GCNGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	386, 463
HinfI	GANTC	2 cut(s)	25, 749
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	212, 658
Hpy188I	TCNGA	2 cut(s)	181, 441
Hpy188III	TCNNGA	4 cut(s)	256, 341, 499, 602
Hpy8I	GTNNAC	2 cut(s)	212, 658
HpyAV	CCTTC	4 cut(s)	275, 391, 724, 739
HpyCH4III	ACNGT	3 cut(s)	433, 476, 678
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	1 cut(s)	427
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	1 cut(s)	741
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	386, 463
Kzo9I	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
LmnI	GCTCC	2 cut(s)	334, 419
LpnPI	CCDG	6 cut(s)	45, 165, 263, 271, 436, 728
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	6 cut(s)	74, 90, 102, 161, 581, 633
MboI	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
MboII	GAAGA	7 cut(s)	34, 110, 135, 447, 457, 530, 769
MflI	RGATCY	2 cut(s)	72, 100
MluCI	AATT	3 cut(s)	129, 221, 595
MseI	TTAA	3 cut(s)	54, 69, 330
MslI	CAYNNNNRTG	1 cut(s)	589
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
NlaIII	CATG	2 cut(s)	386, 463
NspV	TTCGAA	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	25, 749
PkrI	GCNGC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	196, 674
PspXI	VCTCGAGB	1 cut(s)	557
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PsuI	RGATCY	2 cut(s)	72, 100
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	3 cut(s)	54, 69, 330
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	6 cut(s)	72, 88, 100, 159, 579, 631
Sau96I	GGNCC	2 cut(s)	196, 674
ScrFI	CCNGG	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	1 cut(s)	674
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	557, 602
SmoI	CTYRAG	2 cut(s)	557, 602
Sse9I	AATT	3 cut(s)	129, 221, 595
SsiI	CCGC	2 cut(s)	92, 139
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	459, 648
TaaI	ACNGT	3 cut(s)	433, 476, 678
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	6 cut(s)	11, 134, 340, 558, 578, 624
TasI	AATT	3 cut(s)	129, 221, 595
TatI	WGTACW	1 cut(s)	655
TfiI	GAWTC	2 cut(s)	25, 749
Tru1I	TTAA	3 cut(s)	54, 69, 330
Tru9I	TTAA	3 cut(s)	54, 69, 330
TscAI	CASTG	2 cut(s)	429, 557
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	17, 530, 582
TspRI	CASTG	2 cut(s)	429, 557
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	1 cut(s)	595
XhoI	CTCGAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.