AT1G66890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016547
Physical Location & Seq
Forward (+)
24957362 .. 24958293
932 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66890.1

Sequence Viewer

Length: 477 bp
ATGTCTCTGCAAAAGTTTAAGCTTCTCGCAACTCATTGCAGCACCGTCGCAGAGAGTCCGACACGTAGTCCAGTCATCCACCTCCGCCGTCGTAAAACGCTGCGTTTGTTACTCACTCGATCATCAGACCGATGGAGATTACCGGAGATCCAAAACAACGTAGATGAATCGAAGAAAACGGATAAGAGAGGTAAGATCCGATCTAGCCGGAAGCTTGGAGATCTTTTTGTTTCGTCGCCACCGTTTGAGGAAAGTGGCGGTGGCGGCGGCGGAGATAAGGGGACGAAGATGGAGGTGGAGATGGAGAGGGATGTACCGGTTAACGGCGTTAGTAATAACGCAGGTTTTGGAGAAGAGATAACGGCTCGGCGTGTGGGCTTTAACGGGTCTGTTAGGCCCATGTCATCTGTTACACTTCGATGTAGATTACTTAGACGATCTTGGCGTCCTGTACTTGTAACTATTCCTGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.72

Weight (kDa)

10.84

Isoelectric Point (pI)

87.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AciI CCGC 5 cut(s) 85, 258, 264, 267, 270
AclWI GGATC 2 cut(s) 142, 190
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 2 cut(s) 315, 453
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 62
AgeI ACCGGT 1 cut(s) 316
AhdI GACNNNNNGTC 1 cut(s) 66
AluBI AGCT 2 cut(s) 22, 214
AluI AGCT 2 cut(s) 22, 214
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 142, 190
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 39, 100
AsiGI ACCGGT 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 51, 87
BccI CCATC 3 cut(s) 126, 283, 295
BceAI ACGGC 3 cut(s) 72, 340, 378
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 332
BglII AGATCT 1 cut(s) 220
BisI GCNGC 4 cut(s) 40, 101, 265, 268
BlsI GCNGC 4 cut(s) 41, 102, 266, 269
BmeRI GACNNNNNGTC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 445
BsaWI WCCGGW 2 cut(s) 142, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 2 cut(s) 75, 316
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 51, 87
BshFI GGCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 316
BsiSI CCGG 3 cut(s) 143, 208, 317
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 1 cut(s) 397
Bsp143I GATC 6 cut(s) 119, 147, 195, 200, 220, 437
BspACI CCGC 5 cut(s) 85, 258, 264, 267, 270
BspANI GGCC 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 2 cut(s) 142, 190
BsrDI GCAATG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 316
BssMI GATC 6 cut(s) 119, 147, 195, 200, 220, 437
BssNI GRCGYC 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 46, 243
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 431
BstF5I GGATG 2 cut(s) 75, 316
BstKTI GATC 6 cut(s) 122, 150, 198, 203, 223, 440
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 119, 147, 195, 200, 220, 437
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 51, 87
BstX2I RGATCY 3 cut(s) 147, 195, 220
BstYI RGATCY 3 cut(s) 147, 195, 220
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 75, 316
BveI ACCTGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 396
CseI GACGC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 314, 452
CspAI ACCGGT 1 cut(s) 316
CviAII CATG 1 cut(s) 400
CviJI RGCY 6 cut(s) 22, 207, 214, 365, 378, 397
CviKI_1 RGCY 6 cut(s) 22, 207, 214, 365, 378, 397
CviQI GTAC 2 cut(s) 314, 452
DdeI CTNAG 1 cut(s) 431
DpnI GATC 6 cut(s) 121, 149, 197, 202, 222, 439
DpnII GATC 6 cut(s) 119, 147, 195, 200, 220, 437
DriI GACNNNNNGTC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 2 cut(s) 74, 285
FaeI CATG 1 cut(s) 403
FaiI YATR 1 cut(s) 401
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 40, 101, 265, 268
FokI GGATG 2 cut(s) 62, 323
Fsp4HI GCNGC 4 cut(s) 40, 101, 265, 268
FspBI CTAG 1 cut(s) 204
GluI GCNGC 4 cut(s) 40, 101, 265, 268
HaeIII GGCC 1 cut(s) 397
HapII CCGG 3 cut(s) 143, 208, 317
HgaI GACGC 1 cut(s) 434
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 1 cut(s) 403
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 20, 212
HinfI GANTC 2 cut(s) 55, 167
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 3 cut(s) 143, 208, 317
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 60, 127, 200
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 3 cut(s) 50, 93, 238
HpyCH4III ACNGT 2 cut(s) 46, 243
HpyCH4IV ACGT 2 cut(s) 64, 159
HpyCH4V TGCA 2 cut(s) 10, 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 2 cut(s) 64, 159
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 1 cut(s) 403
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 6 cut(s) 119, 147, 195, 200, 220, 437
LpnPI CCDG 6 cut(s) 84, 156, 221, 327, 330, 462
Lsp1109I GCAGC 2 cut(s) 51, 87
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 64, 159
MaeIII GTNAC 3 cut(s) 108, 409, 457
MalI GATC 6 cut(s) 121, 149, 197, 202, 222, 439
MboI GATC 6 cut(s) 119, 147, 195, 200, 220, 437
MboII GAAGA 3 cut(s) 184, 298, 365
MflI RGATCY 3 cut(s) 147, 195, 220
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 5 cut(s) 92, 182, 241, 286, 300
MseI TTAA 3 cut(s) 18, 321, 381
MslI CAYNNNNRTG 1 cut(s) 418
MspI CCGG 3 cut(s) 143, 208, 317
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 6 cut(s) 119, 147, 195, 200, 220, 437
NlaIII CATG 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 442
PfeI GAWTC 1 cut(s) 167
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 4 cut(s) 41, 102, 266, 269
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 65
PspPI GGNCC 1 cut(s) 396
PsuI RGATCY 3 cut(s) 147, 195, 220
RsaI GTAC 2 cut(s) 315, 453
RsaNI GTAC 2 cut(s) 314, 452
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 3 cut(s) 18, 321, 381
SatI GCNGC 4 cut(s) 40, 101, 265, 268
Sau3AI GATC 6 cut(s) 119, 147, 195, 200, 220, 437
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 1 cut(s) 64
SetI ASST 8 cut(s) 24, 67, 84, 162, 193, 216, 297, 346
SmiMI CAYNNNNRTG 1 cut(s) 418
SsiI CCGC 5 cut(s) 85, 258, 264, 267, 270
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 46, 243
TaiI ACGT 2 cut(s) 67, 162
TaqI TCGA 3 cut(s) 118, 170, 418
TaqII GACCGA 1 cut(s) 144
TatI WGTACW 1 cut(s) 451
TauI GCSGC 2 cut(s) 267, 270
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 18, 321, 381
Tru9I TTAA 3 cut(s) 18, 321, 381
TseI GCWGC 2 cut(s) 39, 100
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 194
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.