Rw1G006010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016547
Physical Location & Seq
Forward (+)
12140452 .. 12141319
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006010.1

Sequence Viewer

Length: 444 bp
ATGGCAACCTTGCAAAAATTCAAGCTCCTCGCCACTCAATGCTCCGTCGTCGCCGGAAGCCCCACGCGCAGCCCATCCGCCAGCCCCGTCATCCACCTCCGCCGCCGCAAAACCCTCAGAATGTTCCTCTCCCGCCCCGACCGCCGCCGAATGCCTCGCCGGAGCACCTCCTCCGATGCTCCCAACAACGACGACGGCGACGACGATCGCGAAAATGACGACCCGCCGGAGAGGAAGCAGAACAGCAAGGAGCAGCAGGCTCGGGTCCGCCGTAAGCTCAGGGACCTGTTCGTGTCGTCGCCGCCGCCGCTGGAGGATGGAAGGAGAGGCCGAGAGGTGGAAGATGGAGAGGAGCGAGGATTGCTGTCGGCGACTGACGTCGGTGGCGGCGGCGTCGGCGGCTTGGCGAGGACTCGGCGCGGCGGGTTGTTAAGTCGACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

11.05

Isoelectric Point (pI)

91.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 436
AccII CGCG 3 cut(s) 67, 210, 420
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 2 cut(s) 378, 393
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 2 cut(s) 25, 277
AluI AGCT 2 cut(s) 25, 277
Alw21I GWGCWC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 69, 253
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 69, 420
AspS9I GGNCC 2 cut(s) 265, 283
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 265, 283
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 81, 265
BccI CCATC 3 cut(s) 82, 311, 338
BceAI ACGGC 2 cut(s) 211, 255
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
Bme18I GGWCC 2 cut(s) 265, 283
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 265, 283
BmiI GGNNCC 2 cut(s) 266, 284
BmsI GCATC 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 378, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 337
BseGI GGATG 3 cut(s) 74, 90, 322
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 130, 292
BseRI GAGGAG 3 cut(s) 17, 160, 365
BseXI GCAGC 2 cut(s) 81, 265
Bsh1236I CGCG 3 cut(s) 67, 210, 420
Bsh1285I CGRYCG 2 cut(s) 142, 208
BshFI GGCC 1 cut(s) 330
BsiEI CGRYCG 2 cut(s) 142, 208
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 3 cut(s) 54, 160, 227
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 205
Bsp68I TCGCGA 1 cut(s) 210
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 129, 291
BspFNI CGCG 3 cut(s) 67, 210, 420
BspLI GGNNCC 2 cut(s) 266, 284
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 2 cut(s) 378, 393
BstACI GRCGYC 2 cut(s) 378, 393
BstC8I GCNNGC 2 cut(s) 82, 258
BstDEI CTNAG 2 cut(s) 116, 278
BstF5I GGATG 3 cut(s) 74, 90, 322
BstFNI CGCG 3 cut(s) 67, 210, 420
BstHHI GCGC 2 cut(s) 69, 420
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 2 cut(s) 142, 208
BstMWI GCNNNNNNNGC 6 cut(s) 66, 141, 307, 361, 396, 399
BstPAI GACNNNNGTC 1 cut(s) 377
BstUI CGCG 3 cut(s) 67, 210, 420
BstV1I GCAGC 2 cut(s) 81, 265
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 3 cut(s) 74, 90, 322
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 82, 258
CfoI GCGC 2 cut(s) 69, 420
Cfr13I GGNCC 2 cut(s) 265, 283
CseI GACGC 1 cut(s) 382
CviJI RGCY 8 cut(s) 25, 60, 72, 84, 260, 277, 330, 402
CviKI_1 RGCY 8 cut(s) 25, 60, 72, 84, 260, 277, 330, 402
DdeI CTNAG 2 cut(s) 116, 278
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EciI GGCGGA 3 cut(s) 67, 89, 257
Eco47I GGWCC 2 cut(s) 265, 283
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 283
FaqI GGGAC 1 cut(s) 296
FauI CCCGC 3 cut(s) 140, 231, 416
FblI GTMKAC 1 cut(s) 436
FokI GGATG 3 cut(s) 61, 77, 329
GlaI GCGC 2 cut(s) 68, 419
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 330
HapII CCGG 3 cut(s) 54, 160, 227
HgaI GACGC 1 cut(s) 382
HhaI GCGC 2 cut(s) 69, 420
Hin1I GRCGYC 2 cut(s) 378, 393
Hin6I GCGC 2 cut(s) 67, 418
HinP1I GCGC 2 cut(s) 67, 418
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 1 cut(s) 412
HpaII CCGG 3 cut(s) 54, 160, 227
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 2 cut(s) 119, 175
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 9 cut(s) 50, 53, 194, 197, 203, 206, 301, 383, 398
HpyAV CCTTC 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 141, 307, 361, 396, 399
HpyF3I CTNAG 2 cut(s) 116, 278
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 2 cut(s) 378, 393
HspAI GCGC 2 cut(s) 67, 418
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 6 cut(s) 30, 47, 162, 184, 250, 352
LpnPI CCDG 8 cut(s) 67, 94, 173, 240, 242, 265, 296, 299
Lsp1109I GCAGC 2 cut(s) 81, 265
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 378
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 406
MseI TTAA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 3 cut(s) 54, 160, 227
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 3 cut(s) 67, 210, 420
MwoI GCNNNNNNNGC 6 cut(s) 66, 141, 307, 361, 396, 399
NdeII GATC 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 266, 284
NmeAIII GCCGAG 2 cut(s) 356, 394
NruI TCGCGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 5 cut(s) 195, 198, 201, 207, 268
PctI GAATGC 1 cut(s) 156
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 266, 284
PspPI GGNCC 2 cut(s) 265, 283
PspPPI RGGWCCY 1 cut(s) 283
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 210
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 431
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 265, 283
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 167
SetI ASST 8 cut(s) 11, 27, 99, 170, 279, 288, 339, 381
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 265, 283
Sse9I AATT 1 cut(s) 17
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 436
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TseI GCWGC 2 cut(s) 69, 253
TspGWI ACGGA 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 265, 283
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 436
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.