AT5G16200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016547
Physical Location & Seq
Reverse (-)
5289401 .. 5290506
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16200.1

Sequence Viewer

Length: 492 bp
ATGTCACTCTCCCGTCTACACAAATTCAAGCTCTTCGCGGCACATCGTAGCTTGGAAGCGTCCACCGCGGGGAGTCCCACGATGAGTCCAACGAAGAGCCCTGTATTCAATCTCCGACGACGCAAAACCCTGCGGATGTTGTTCGATAAGAGCTCCGATAGTCGCAGACGGAATCTCCGTCAGATCCTTGAGGAATCTCCGGAATCAGATGGAAATTCCGGGAATAAGAAGAGGGGAAACCACCGTGCTACTAGGCGTAAATTGAGAGAGCTCTTGGTCACATCGCCGTCGCCGCCGTACAAAGGCAGAGAAGATATAGACGGAATTGGAGAAGAGAGAAGCGAGATTTCGCCGTTAAACGTCACTTCAAACGGTGACGGCAGAGAGTTAACGGCTCGACGATTCGGTTCATCCGGTTCGGTTCAATCATTTCGGTTAAGGATTTTAAGAAAACCATGGCGACCAGTCCTGGTTTCTATTCCTGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.51

Weight (kDa)

11.46

Isoelectric Point (pI)

96.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 16
AccII CGCG 2 cut(s) 38, 68
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 5 cut(s) 38, 66, 68, 133, 293
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 23, 214
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 69, 302
AgsI TTSAA 4 cut(s) 28, 109, 369, 425
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 4 cut(s) 31, 51, 153, 271
AluI AGCT 4 cut(s) 31, 51, 153, 271
Alw21I GWGCWC 2 cut(s) 155, 273
AlwI GGATC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 199
ApoI RAATTY 2 cut(s) 23, 214
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 386
BanII GRGCYC 3 cut(s) 101, 155, 273
Bbv12I GWGCWC 2 cut(s) 155, 273
BccI CCATC 1 cut(s) 203
BceAI ACGGC 5 cut(s) 271, 280, 337, 394, 408
BciT130I CCWGG 1 cut(s) 470
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 252
BisI GCNGC 2 cut(s) 39, 293
BlsI GCNGC 2 cut(s) 40, 294
Bme1390I CCNGG 2 cut(s) 220, 470
BmrFI CCNGG 2 cut(s) 220, 470
Bpu10I CCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 66, 455
BsaWI WCCGGW 2 cut(s) 199, 413
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 302
Bse1I ACTGG 1 cut(s) 464
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 66, 455
BseGI GGATG 2 cut(s) 141, 410
BseLI CCNNNNNNNGG 2 cut(s) 69, 302
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 464
Bsh1236I CGCG 2 cut(s) 38, 68
BsiHKAI GWGCWC 2 cut(s) 155, 273
BsiSI CCGG 3 cut(s) 200, 219, 414
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 69, 302
BsmFI GGGAC 1 cut(s) 60
Bsp1286I GDGCHC 3 cut(s) 101, 155, 273
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 5 cut(s) 38, 66, 68, 133, 293
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 2 cut(s) 38, 68
BspPI GGATC 1 cut(s) 178
BspQI GCTCTTC 2 cut(s) 38, 89
BsrI ACTGG 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 66, 455
BssMI GATC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 245, 374
Bst6I CTCTTC 4 cut(s) 38, 89, 224, 327
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 2 cut(s) 66, 455
BstF5I GGATG 2 cut(s) 141, 410
BstFNI CGCG 2 cut(s) 38, 68
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 65, 292
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 218, 468
BstUI CGCG 2 cut(s) 38, 68
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BtgI CCRYGG 2 cut(s) 66, 455
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 141, 410
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 2 cut(s) 48, 129
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 456
CviJI RGCY 6 cut(s) 31, 51, 99, 153, 271, 395
CviKI_1 RGCY 6 cut(s) 31, 51, 99, 153, 271, 395
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 483
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 4 cut(s) 38, 89, 224, 327
EarI CTCTTC 4 cut(s) 38, 89, 224, 327
Ecl136II GAGCTC 2 cut(s) 153, 271
Eco130I CCWWGG 1 cut(s) 455
Eco24I GRGCYC 3 cut(s) 101, 155, 273
Eco53kI GAGCTC 2 cut(s) 153, 271
EcoICRI GAGCTC 2 cut(s) 153, 271
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 455
EcoT38I GRGCYC 3 cut(s) 101, 155, 273
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 1 cut(s) 459
FaiI YATR 2 cut(s) 317, 457
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 455
FauI CCCGC 1 cut(s) 61
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 39, 293
FokI GGATG 2 cut(s) 148, 397
FriOI GRGCYC 3 cut(s) 101, 155, 273
Fsp4HI GCNGC 2 cut(s) 39, 293
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 39, 293
HapII CCGG 3 cut(s) 200, 219, 414
HgaI GACGC 2 cut(s) 48, 129
Hin1II CATG 1 cut(s) 459
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 6 cut(s) 73, 85, 172, 194, 203, 402
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 3 cut(s) 200, 219, 414
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 17, 63, 390
Hpy188I TCNGA 4 cut(s) 116, 157, 183, 208
Hpy188III TCNNGA 2 cut(s) 200, 482
Hpy8I GTNNAC 3 cut(s) 17, 63, 390
Hpy99I CGWCG 4 cut(s) 120, 123, 292, 402
HpyCH4III ACNGT 2 cut(s) 245, 374
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 292
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 459
Kpn2I TCCGGA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 390
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 183
LguI GCTCTTC 2 cut(s) 38, 89
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 114, 143, 213, 232, 427, 455, 477, 482
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 4 cut(s) 3, 277, 361, 374
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 5 cut(s) 25, 106, 241, 323, 344
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 3 cut(s) 101, 155, 273
MluCI AATT 4 cut(s) 23, 214, 260, 324
MlyI GAGTC 2 cut(s) 82, 94
MmeI TCCRAC 2 cut(s) 113, 139
MnlI CCTC 2 cut(s) 184, 225
MroI TCCGGA 1 cut(s) 199
MseI TTAA 4 cut(s) 356, 389, 437, 446
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 200, 219, 414
MspR9I CCNGG 2 cut(s) 220, 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 2 cut(s) 38, 68
MwoI GCNNNNNNNGC 2 cut(s) 65, 292
NciI CCSGG 1 cut(s) 220
NcoI CCATGG 1 cut(s) 455
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 459
NmuCI GTSAC 4 cut(s) 3, 277, 361, 374
PciSI GCTCTTC 2 cut(s) 38, 89
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfeI GAWTC 4 cut(s) 172, 194, 203, 402
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 2 cut(s) 40, 294
PleI GAGTC 2 cut(s) 81, 93
PpsI GAGTC 2 cut(s) 81, 93
Psp124BI GAGCTC 2 cut(s) 155, 273
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacI GAGCTC 2 cut(s) 155, 273
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 2 cut(s) 38, 89
SaqAI TTAA 4 cut(s) 356, 389, 437, 446
SatI GCNGC 2 cut(s) 39, 293
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 2 cut(s) 82, 94
ScrFI CCNGG 2 cut(s) 220, 470
SduI GDGCHC 3 cut(s) 101, 155, 273
SetI ASST 5 cut(s) 33, 53, 155, 273, 363
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 4 cut(s) 23, 214, 260, 324
SsiI CCGC 5 cut(s) 38, 66, 68, 133, 293
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 2 cut(s) 155, 273
StyD4I CCNGG 2 cut(s) 218, 468
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 245, 374
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 144, 397
TasI AATT 4 cut(s) 23, 214, 260, 324
TauI GCSGC 2 cut(s) 41, 295
TfiI GAWTC 4 cut(s) 172, 194, 203, 402
Tru1I TTAA 4 cut(s) 356, 389, 437, 446
Tru9I TTAA 4 cut(s) 356, 389, 437, 446
TseFI GTSAC 4 cut(s) 3, 277, 361, 374
Tsp45I GTSAC 4 cut(s) 3, 277, 361, 374
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 3 cut(s) 167, 184, 336
XapI RAATTY 2 cut(s) 23, 214
XmiI GTMKAC 1 cut(s) 16
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.