RchiOBHm_Chr1g0326241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016547
Physical Location & Seq
Forward (+)
14484800 .. 14486740
1941 bp
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UTR
Exon/CDS
Intron
PRQ55588

Sequence Viewer

Length: 507 bp
ATGGCAACCTTGCAAAAATTCAAGCTCCTCGCCACTCAATGCTCCGTCGTCGCCGGAAGCCCCACGCGCAGCCCATCCGCCAGCCCCGTCATCCACCTCCGCCGCCGCAAAACCCTCAGAATGTTCCTCACCCGCCCCGACCGCCGCCGAATGCCTCGCCGGAGCACCTCCTCCGATGCTCCCAACAACGACGACGGCGACGACGATCGCGAAAATGACGACCCGCCGGAGAGGAGGCAGAACAGCAAGGAGCAGGCTCGGGTCCGCCGTAAGCTCAGGGACCTGTTCGTGTCGTCGCCGCCGCCGCTGGAGGATGGAAGGAGAGGCCGAGAGGTGGAAGGTGGAGAGGAGCGAGGATTGCTGTCGGCCACGGACGTCGGCGGTGGCGTCGGTGGCTTGGCGAGGACTCGGCGCGGCGGGTTGTTAAGTCGACCCCTGACGGCGTCGTTTAGGTGTCGATTGCTGAAGAGGGCTTGGCGACCTGTGCTGGTTCCTATTCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.85

Weight (kDa)

11.42

Isoelectric Point (pI)

86.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 430
AccII CGCG 3 cut(s) 67, 210, 414
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 3 cut(s) 375, 387, 443
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 2 cut(s) 25, 274
AluI AGCT 2 cut(s) 25, 274
Alw21I GWGCWC 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 258, 500
AoxI GGCC 2 cut(s) 325, 366
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 69, 414
AspS9I GGNCC 2 cut(s) 262, 280
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 2 cut(s) 258, 500
AvaII GGWCC 2 cut(s) 262, 280
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 82, 308
BceAI ACGGC 3 cut(s) 211, 252, 456
BisI GCNGC 8 cut(s) 70, 103, 106, 145, 299, 302, 305, 415
BlsI GCNGC 8 cut(s) 71, 104, 107, 146, 300, 303, 306, 416
Bme18I GGWCC 2 cut(s) 262, 280
BmeT110I CYCGRG 2 cut(s) 258, 500
BmgT120I GGNCC 2 cut(s) 262, 280
BmiI GGNNCC 3 cut(s) 263, 281, 492
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 275
BsaHI GRCGYC 3 cut(s) 375, 387, 443
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 74, 90, 319
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 130, 289
BseRI GAGGAG 4 cut(s) 17, 160, 247, 362
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 3 cut(s) 67, 210, 414
Bsh1285I CGRYCG 2 cut(s) 142, 208
BshFI GGCC 2 cut(s) 327, 368
BsiEI CGRYCG 2 cut(s) 142, 208
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 258, 500
BsiSI CCGG 3 cut(s) 54, 160, 227
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 327, 368
BsoBI CYCGRG 2 cut(s) 258, 500
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 205
Bsp68I TCGCGA 1 cut(s) 210
BspANI GGCC 2 cut(s) 327, 368
BspCNI CTCAG 2 cut(s) 129, 288
BspFNI CGCG 3 cut(s) 67, 210, 414
BspLI GGNNCC 3 cut(s) 263, 281, 492
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 3 cut(s) 375, 387, 443
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 3 cut(s) 375, 387, 443
BstC8I GCNNGC 2 cut(s) 82, 255
BstDEI CTNAG 2 cut(s) 116, 275
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 74, 90, 319
BstFNI CGCG 3 cut(s) 67, 210, 414
BstHHI GCGC 2 cut(s) 69, 414
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 2 cut(s) 142, 208
BstMWI GCNNNNNNNGC 6 cut(s) 66, 141, 304, 358, 393, 484
BstUI CGCG 3 cut(s) 67, 210, 414
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 327, 368
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 74, 90, 319
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 82, 255
CfoI GCGC 2 cut(s) 69, 414
Cfr13I GGNCC 2 cut(s) 262, 280
CseI GACGC 2 cut(s) 376, 432
DdeI CTNAG 2 cut(s) 116, 275
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
EciI GGCGGA 3 cut(s) 67, 89, 254
Eco47I GGWCC 2 cut(s) 262, 280
Eco57I CTGAAG 1 cut(s) 485
Eco88I CYCGRG 2 cut(s) 258, 500
EcoO109I RGGNCCY 1 cut(s) 280
FaqI GGGAC 1 cut(s) 293
FauI CCCGC 3 cut(s) 140, 231, 410
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 8 cut(s) 70, 103, 106, 145, 299, 302, 305, 415
FokI GGATG 3 cut(s) 61, 77, 326
Fsp4HI GCNGC 8 cut(s) 70, 103, 106, 145, 299, 302, 305, 415
GlaI GCGC 2 cut(s) 68, 413
GluI GCNGC 8 cut(s) 70, 103, 106, 145, 299, 302, 305, 415
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 327, 368
HapII CCGG 3 cut(s) 54, 160, 227
HgaI GACGC 2 cut(s) 376, 432
HhaI GCGC 2 cut(s) 69, 414
Hin1I GRCGYC 3 cut(s) 375, 387, 443
Hin6I GCGC 2 cut(s) 67, 412
HinP1I GCGC 2 cut(s) 67, 412
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 1 cut(s) 406
HpaII CCGG 3 cut(s) 54, 160, 227
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 2 cut(s) 119, 175
Hpy188III TCNNGA 2 cut(s) 209, 500
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 2 cut(s) 312, 332
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 141, 304, 358, 393, 484
HpyF3I CTNAG 2 cut(s) 116, 275
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 3 cut(s) 375, 387, 443
HspAI GCGC 2 cut(s) 67, 412
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 6 cut(s) 30, 47, 162, 184, 250, 349
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 375
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 400
MseI TTAA 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 54, 160, 227
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 3 cut(s) 67, 210, 414
MwoI GCNNNNNNNGC 6 cut(s) 66, 141, 304, 358, 393, 484
NdeII GATC 1 cut(s) 205
NlaIV GGNNCC 3 cut(s) 263, 281, 492
NmeAIII GCCGAG 2 cut(s) 353, 388
NruI TCGCGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 6 cut(s) 195, 198, 201, 207, 265, 384
PctI GAATGC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 442
PkrI GCNGC 8 cut(s) 71, 104, 107, 146, 300, 303, 306, 416
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 263, 281, 492
PspPI GGNCC 2 cut(s) 262, 280
PspPPI RGGWCCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 442
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 210
SalI GTCGAC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 8 cut(s) 70, 103, 106, 145, 299, 302, 305, 415
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 262, 280
SchI GAGTC 1 cut(s) 400
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 262, 280
Sse9I AATT 1 cut(s) 17
TaiI ACGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 430, 457
TasI AATT 1 cut(s) 17
TauI GCSGC 7 cut(s) 105, 108, 147, 301, 304, 307, 417
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TseI GCWGC 1 cut(s) 69
TspGWI ACGGA 2 cut(s) 34, 386
Tth111I GACNNNGTC 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 262, 280
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 430
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.