pycom09g17100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016547
Physical Location & Seq
Reverse (-)
17524684 .. 17525157
474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17100.1

Sequence Viewer

Length: 474 bp
ATGGTGACCCTGCAAAAAGTCAAGCTCTTAGCGACTCAATGCGCCGTAGCCGGTAGCCCAACGCGGAGCCCATCGGCCAGCCCAGTCATTCACCTCCGCCGCCGCAAAACCCTAAGAATGTTCCTCTCCCGCCAGGACCACCGCCGATTGCCTCGCCGGACCAATTCCTCAAAATCTCCACCCATCGACGGCGACAATCGCGACGGTGATCCGCCGCAGAAGAGCAAGGATGTCGCTCGGGTTCGGCGCAAGCTGAAGGACCTCTTCGTGTCGTCACCGCCGTTCGAAGATAGTGTTTCGGATAGGAGAGGTCGAGGAATTGTGGACGAAGAAGAGGAGCGAGGGTTGTTATCGGAAACCGGAAGTGGTGGCGGTGCCGGTAGGTTTCCGACTCGGCGAGGCCGAGGGCTGTCGTTTCGAAATAGGTTGCTGAAACGATCTTGGCGGCCTGTTCTGGTTTCCATCCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

11.59

Isoelectric Point (pI)

83.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccII CGCG 2 cut(s) 64, 201
AclWI GGATC 1 cut(s) 203
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 188
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 25, 253
AluI AGCT 2 cut(s) 25, 253
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 237, 467
AoxI GGCC 3 cut(s) 75, 400, 446
AspLEI GCGC 2 cut(s) 44, 249
AspS9I GGNCC 3 cut(s) 136, 159, 259
AsuHPI GGTGA 4 cut(s) 16, 83, 218, 267
AsuII TTCGAA 2 cut(s) 285, 418
AvaI CYCGRG 2 cut(s) 237, 467
AvaII GGWCC 3 cut(s) 136, 159, 259
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 71
BccI CCATC 3 cut(s) 79, 191, 470
BceAI ACGGC 3 cut(s) 29, 205, 265
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 134
BisI GCNGC 4 cut(s) 100, 103, 215, 446
BlsI GCNGC 4 cut(s) 101, 104, 216, 447
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 3 cut(s) 136, 159, 259
BmeT110I CYCGRG 2 cut(s) 237, 467
BmgT120I GGNCC 3 cut(s) 136, 159, 259
BmiI GGNNCC 2 cut(s) 68, 376
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bpu14I TTCGAA 2 cut(s) 285, 418
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 2 cut(s) 50, 377
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 2 cut(s) 235, 462
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 350
Bsh1236I CGCG 2 cut(s) 64, 201
BshFI GGCC 3 cut(s) 77, 402, 448
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 237, 467
BsiSI CCGG 4 cut(s) 51, 157, 360, 378
BslI CCNNNNNNNGG 1 cut(s) 188
BsnI GGCC 3 cut(s) 77, 402, 448
BsoBI CYCGRG 2 cut(s) 237, 467
Bsp119I TTCGAA 2 cut(s) 285, 418
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 208, 437
Bsp68I TCGCGA 1 cut(s) 201
BspANI GGCC 3 cut(s) 77, 402, 448
BspFNI CGCG 2 cut(s) 64, 201
BspLI GGNNCC 2 cut(s) 68, 376
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 2 cut(s) 285, 418
BspT107I GGYRCC 1 cut(s) 374
BsrFI RCCGGY 2 cut(s) 50, 377
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 50, 377
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 208, 437
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 3 cut(s) 215, 269, 327
BstBI TTCGAA 2 cut(s) 285, 418
BstC8I GCNNGC 2 cut(s) 79, 251
BstDEI CTNAG 2 cut(s) 28, 113
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 235, 462
BstFNI CGCG 2 cut(s) 64, 201
BstHHI GCGC 2 cut(s) 44, 249
BstKTI GATC 2 cut(s) 211, 440
BstMBI GATC 2 cut(s) 208, 437
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 2 cut(s) 64, 201
BsuRI GGCC 3 cut(s) 77, 402, 448
BtsCI GGATG 2 cut(s) 235, 462
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 79, 251
CfoI GCGC 2 cut(s) 44, 249
Cfr10I RCCGGY 2 cut(s) 50, 377
Cfr13I GGNCC 3 cut(s) 136, 159, 259
DdeI CTNAG 2 cut(s) 28, 113
DpnI GATC 2 cut(s) 210, 439
DpnII GATC 2 cut(s) 208, 437
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 215, 269, 327
EarI CTCTTC 3 cut(s) 215, 269, 327
EciI GGCGGA 2 cut(s) 86, 201
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 3 cut(s) 136, 159, 259
Eco57I CTGAAG 1 cut(s) 275
Eco88I CYCGRG 2 cut(s) 237, 467
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 71
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 100, 103, 215, 446
FokI GGATG 2 cut(s) 242, 449
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 100, 103, 215, 446
GlaI GCGC 2 cut(s) 43, 248
GluI GCNGC 4 cut(s) 100, 103, 215, 446
HaeIII GGCC 3 cut(s) 77, 402, 448
HapII CCGG 4 cut(s) 51, 157, 360, 378
HhaI GCGC 2 cut(s) 44, 249
Hin6I GCGC 2 cut(s) 42, 247
HinP1I GCGC 2 cut(s) 42, 247
HinfI GANTC 2 cut(s) 34, 391
HpaII CCGG 4 cut(s) 51, 157, 360, 378
HphI GGTGA 4 cut(s) 16, 83, 218, 267
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 301, 355, 390
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 191, 206
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 28, 113
HspAI GCGC 2 cut(s) 42, 247
Kzo9I GATC 2 cut(s) 208, 437
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 2 cut(s) 66, 337
MaeIII GTNAC 2 cut(s) 4, 273
MalI GATC 2 cut(s) 210, 439
MboI GATC 2 cut(s) 208, 437
MboII GAAGA 5 cut(s) 232, 256, 299, 341, 344
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 163, 318
MlyI GAGTC 2 cut(s) 28, 385
MmeI TCCRAC 1 cut(s) 413
MspI CCGG 4 cut(s) 51, 157, 360, 378
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 64, 201
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 208, 437
NlaIV GGNNCC 2 cut(s) 68, 376
NmeAIII GCCGAG 2 cut(s) 373, 428
NmuCI GTSAC 2 cut(s) 4, 273
NruI TCGCGA 1 cut(s) 201
NspV TTCGAA 2 cut(s) 285, 418
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 400
PkrI GCNGC 4 cut(s) 101, 104, 216, 447
PleI GAGTC 2 cut(s) 28, 385
PpsI GAGTC 2 cut(s) 28, 385
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 68, 376
PspPI GGNCC 3 cut(s) 136, 159, 259
PspPPI RGGWCCY 1 cut(s) 259
RruI TCGCGA 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 4 cut(s) 100, 103, 215, 446
Sau3AI GATC 2 cut(s) 208, 437
Sau96I GGNCC 3 cut(s) 136, 159, 259
SchI GAGTC 2 cut(s) 28, 385
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 27, 96, 255, 264, 313, 386, 428
SfuI TTCGAA 2 cut(s) 285, 418
SinI GGWCC 3 cut(s) 136, 159, 259
Sse9I AATT 2 cut(s) 163, 318
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 186, 285, 313, 418
TasI AATT 2 cut(s) 163, 318
TauI GCSGC 4 cut(s) 102, 105, 217, 448
TseFI GTSAC 2 cut(s) 4, 273
Tsp45I GTSAC 2 cut(s) 4, 273
VpaK11BI GGWCC 3 cut(s) 136, 159, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.