Rmu_sc0004192.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004192.1
OG0016547
Physical Location & Seq
Reverse (-)
115161 .. 116079
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004192.1_g000026.1.cds

Sequence Viewer

Length: 672 bp
atggcaaccttgcaaaaattcaagctcctcgccactcaatgctccgtcgtcgccggaagccccacgcgcagcccatccgccagccccgtcatccacctccgccgccgcaaaaccctcagaatgttcctctcccgccccgaccgccgccgaatgcctcgccggagcacctcctccgatgctcccaacaacgacgacggcgacgacgatcgcgaaaatgacgacccgccggagaggaagcagaacagcaaggagcagcaggctcgggtccgccgtaagctcagggacctgttcgtgtcgtcgccgccgccgctggaggatggaaggagaggccgagaggtggaagatggagaggagcgaggattgctgtcggcgactgacgtcggtggcggcggcgtcggcggcttggcgaggactcggcgcggcgggttgttaagtcgaccgctgacggcgtcgtttaggtgtagattgctgaagagggcttggcgacctgtgctggttcctattcccgagatatcactacaaggttcgtctgaaacacttacattcttgaagccgaaagctgattactttgacacttgccgatattatcatagtgcattgttgcctactagaacgaaaaagcctgaggcagtgttgccaaccacattcggcacaccattgaagccgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.97

Weight (kDa)

10.59

Isoelectric Point (pI)

73.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 436
AccII CGCG 3 cut(s) 67, 210, 420
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 3 cut(s) 378, 393, 449
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 22, 550, 661
AluBI AGCT 3 cut(s) 25, 277, 560
AluI AGCT 3 cut(s) 25, 277, 560
Alw21I GWGCWC 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 261, 506
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 69, 253
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 69, 420
AspS9I GGNCC 2 cut(s) 265, 283
AvaI CYCGRG 2 cut(s) 261, 506
AvaII GGWCC 2 cut(s) 265, 283
AxyI CCTNAGG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 81, 265
BccI CCATC 3 cut(s) 82, 311, 338
BceAI ACGGC 3 cut(s) 211, 255, 462
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BfaI CTAG 1 cut(s) 609
Bme18I GGWCC 2 cut(s) 265, 283
BmeT110I CYCGRG 2 cut(s) 261, 506
BmgT120I GGNCC 2 cut(s) 265, 283
BmiI GGNNCC 3 cut(s) 266, 284, 498
BmsI GCATC 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 278
BsaHI GRCGYC 3 cut(s) 378, 393, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse21I CCTNAGG 1 cut(s) 624
BseGI GGATG 3 cut(s) 74, 90, 322
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 130, 292, 615
BseRI GAGGAG 3 cut(s) 17, 160, 365
BseXI GCAGC 2 cut(s) 81, 265
Bsh1236I CGCG 3 cut(s) 67, 210, 420
Bsh1285I CGRYCG 3 cut(s) 142, 208, 440
BshFI GGCC 1 cut(s) 330
BsiEI CGRYCG 3 cut(s) 142, 208, 440
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 261, 506
BsiSI CCGG 3 cut(s) 54, 160, 227
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 261, 506
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 205
Bsp68I TCGCGA 1 cut(s) 210
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 129, 291, 616
BspFNI CGCG 3 cut(s) 67, 210, 420
BspLI GGNNCC 3 cut(s) 266, 284, 498
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 3 cut(s) 378, 393, 449
Bst6I CTCTTC 1 cut(s) 467
BstACI GRCGYC 3 cut(s) 378, 393, 449
BstC8I GCNNGC 2 cut(s) 82, 258
BstDEI CTNAG 3 cut(s) 116, 278, 624
BstF5I GGATG 3 cut(s) 74, 90, 322
BstFNI CGCG 3 cut(s) 67, 210, 420
BstHHI GCGC 2 cut(s) 69, 420
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 3 cut(s) 142, 208, 440
BstMWI GCNNNNNNNGC 7 cut(s) 66, 141, 307, 361, 396, 399, 490
BstPAI GACNNNNGTC 1 cut(s) 377
BstUI CGCG 3 cut(s) 67, 210, 420
BstV1I GCAGC 2 cut(s) 81, 265
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 3 cut(s) 74, 90, 322
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 82, 258
CfoI GCGC 2 cut(s) 69, 420
Cfr13I GGNCC 2 cut(s) 265, 283
CseI GACGC 2 cut(s) 382, 438
DdeI CTNAG 3 cut(s) 116, 278, 624
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
EciI GGCGGA 3 cut(s) 67, 89, 257
Eco32I GATATC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 265, 283
Eco57I CTGAAG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 2 cut(s) 261, 506
EcoO109I RGGNCCY 1 cut(s) 283
EcoRV GATATC 1 cut(s) 513
FaiI YATR 1 cut(s) 591
FaqI GGGAC 1 cut(s) 296
FauI CCCGC 3 cut(s) 140, 231, 416
FblI GTMKAC 1 cut(s) 436
FokI GGATG 3 cut(s) 61, 77, 329
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 68, 419
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 330
HapII CCGG 3 cut(s) 54, 160, 227
HgaI GACGC 2 cut(s) 382, 438
HhaI GCGC 2 cut(s) 69, 420
Hin1I GRCGYC 3 cut(s) 378, 393, 449
Hin6I GCGC 2 cut(s) 67, 418
HinP1I GCGC 2 cut(s) 67, 418
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 1 cut(s) 412
HpaII CCGG 3 cut(s) 54, 160, 227
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 119, 175, 532
Hpy188III TCNNGA 3 cut(s) 209, 506, 547
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 2 cut(s) 13, 596
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 141, 307, 361, 396, 399, 490
HpyF3I CTNAG 3 cut(s) 116, 278, 624
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 3 cut(s) 378, 393, 449
HspAI GCGC 2 cut(s) 67, 418
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 6 cut(s) 30, 47, 162, 184, 250, 352
Lsp1109I GCAGC 2 cut(s) 81, 265
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 378
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 353, 484
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 17, 667
MlyI GAGTC 1 cut(s) 406
MseI TTAA 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 310, 442
MspI CCGG 3 cut(s) 54, 160, 227
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 3 cut(s) 67, 210, 420
MwoI GCNNNNNNNGC 7 cut(s) 66, 141, 307, 361, 396, 399, 490
NdeII GATC 1 cut(s) 205
NlaIV GGNNCC 3 cut(s) 266, 284, 498
NmeAIII GCCGAG 2 cut(s) 356, 394
NruI TCGCGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 5 cut(s) 195, 198, 201, 207, 268
PctI GAATGC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 448
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 266, 284, 498
PspPI GGNCC 2 cut(s) 265, 283
PspPPI RGGWCCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 448
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 210
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 431
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 265, 283
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 265, 283
Sse9I AATT 2 cut(s) 17, 667
SspMI CTAG 1 cut(s) 609
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 436
TasI AATT 2 cut(s) 17, 667
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 636
TseI GCWGC 2 cut(s) 69, 253
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 636
Tth111I GACNNNGTC 1 cut(s) 448
VpaK11BI GGWCC 2 cut(s) 265, 283
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.