MD17G1247700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016547
Physical Location & Seq
Reverse (-)
29671421 .. 29671915
495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1247700.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGCGACACTGCAGAAATTCAAGCTCTTAGCGACTCAATGTGCCGTCGCCGGAAGCCCAACGCGAAGCCCATCGGCCAGCCCAGTCATCCACCTCCGCCGCCGCAAGACGCTAAGAATGTTCCTCACCCGCCAGGATCGCCGCCGATTGCCTCGCCAAACCAATTCCTCGGAATCTCCACCCATTGACGGTGACAATCGCAACGGTGATTCGCCGCAGAAGAGCAAGGAGGTCGCTCGGGTTCGGCGCAAGCTGAAGGACCTCTTCGTGTCGTCGCCGCCGTTCGAAGATAGGATTTCGGATAGGAGGAGTGGAGGAATTGGGGACGAAGGAGAAGGACGAGGGTTGTTATCGGCAACCGGAAGTGGTGATGGTGCCGGTGAGATTCCGACTCAGCGAGGCGCAGGCTTGTCGCTTCGGCCAATAACGGCGTCGTTTCGAAATAGGTTACTGAAACGAGCTTGGCGGCCTGTTCTGGTTACCATCCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.07

Weight (kDa)

11.54

Isoelectric Point (pI)

75.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccII CGCG 1 cut(s) 64
AciI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 2 cut(s) 75, 419
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 25, 253, 461
AluI AGCT 3 cut(s) 25, 253, 461
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 2 cut(s) 237, 488
AoxI GGCC 3 cut(s) 75, 419, 467
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 249, 404
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 5 cut(s) 118, 203, 218, 380, 392
AsuII TTCGAA 2 cut(s) 285, 439
AvaI CYCGRG 2 cut(s) 237, 488
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 374
BccI CCATC 3 cut(s) 79, 365, 491
BceAI ACGGC 3 cut(s) 29, 265, 444
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 393, 427
BciT130I CCWGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
BlsI GCNGC 6 cut(s) 101, 104, 143, 216, 279, 468
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 237, 488
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bpu14I TTCGAA 2 cut(s) 285, 439
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 87, 483
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 3 cut(s) 77, 421, 469
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 237, 488
BsiSI CCGG 3 cut(s) 51, 360, 378
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 3 cut(s) 77, 421, 469
BsoBI CYCGRG 2 cut(s) 237, 488
Bsp119I TTCGAA 2 cut(s) 285, 439
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
BspANI GGCC 3 cut(s) 77, 421, 469
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 2 cut(s) 285, 439
BspT107I GGYRCC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 191, 206
Bst6I CTCTTC 2 cut(s) 215, 269
BstACI GRCGYC 1 cut(s) 431
BstBI TTCGAA 2 cut(s) 285, 439
BstC8I GCNNGC 3 cut(s) 79, 251, 406
BstDEI CTNAG 3 cut(s) 28, 113, 393
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 2 cut(s) 87, 483
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 2 cut(s) 249, 404
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 77, 421, 469
BtsCI GGATG 2 cut(s) 87, 483
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 79, 251, 406
CfoI GCGC 2 cut(s) 249, 404
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 2 cut(s) 118, 420
DdeI CTNAG 3 cut(s) 28, 113, 393
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 75, 419
Eam1104I CTCTTC 2 cut(s) 215, 269
EarI CTCTTC 2 cut(s) 215, 269
EciI GGCGGA 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 275
Eco88I CYCGRG 2 cut(s) 237, 488
Eco91I GGTNACC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 338
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
FokI GGATG 2 cut(s) 74, 470
Fsp4HI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
GlaI GCGC 2 cut(s) 248, 403
GluI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
HaeIII GGCC 3 cut(s) 77, 421, 469
HapII CCGG 3 cut(s) 51, 360, 378
HgaI GACGC 2 cut(s) 118, 420
HhaI GCGC 2 cut(s) 249, 404
Hin1I GRCGYC 1 cut(s) 431
Hin6I GCGC 2 cut(s) 247, 402
HinP1I GCGC 2 cut(s) 247, 402
HinfI GANTC 5 cut(s) 34, 173, 209, 385, 391
HpaII CCGG 3 cut(s) 51, 360, 378
HphI GGTGA 5 cut(s) 118, 203, 218, 380, 392
Hpy188I TCNGA 3 cut(s) 172, 301, 390
Hpy99I CGWCG 3 cut(s) 50, 277, 436
HpyAV CCTTC 3 cut(s) 250, 323, 329
HpyCH4III ACNGT 2 cut(s) 191, 206
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 3 cut(s) 28, 113, 393
Hsp92I GRCGYC 1 cut(s) 431
HspAI GCGC 2 cut(s) 247, 402
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 215
MaeIII GTNAC 3 cut(s) 191, 447, 478
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 232, 256, 299
MluCI AATT 3 cut(s) 17, 163, 318
MlyI GAGTC 2 cut(s) 28, 385
MmeI TCCRAC 1 cut(s) 413
MspI CCGG 3 cut(s) 51, 360, 378
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 191
NspV TTCGAA 2 cut(s) 285, 439
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfeI GAWTC 3 cut(s) 173, 209, 385
PkrI GCNGC 6 cut(s) 101, 104, 143, 216, 279, 468
PleI GAGTC 2 cut(s) 28, 385
PpsI GAGTC 2 cut(s) 28, 385
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 28, 385
ScrFI CCNGG 1 cut(s) 134
SetI ASST 7 cut(s) 27, 96, 234, 255, 264, 449, 463
SfcI CTRYAG 1 cut(s) 11
SfuI TTCGAA 2 cut(s) 285, 439
SinI GGWCC 1 cut(s) 259
Sse9I AATT 3 cut(s) 17, 163, 318
SsiI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 191, 206
TaqI TCGA 2 cut(s) 285, 439
TasI AATT 3 cut(s) 17, 163, 318
TauI GCSGC 6 cut(s) 102, 105, 144, 217, 280, 469
TfiI GAWTC 3 cut(s) 173, 209, 385
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.