FvH4_7g03610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016547
Physical Location & Seq
Forward (+)
3977141 .. 3978597
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03610.t1

Sequence Viewer

Length: 474 bp
ATGGCTACCTTGCAAAAATTCAAGCTCTTGGCCACGCAATGCGCCGTCGTCGCCGGAAGCCCCACGCGCAGCCCGACCGCCAGCCCCGTCATCCACCTCCGCCGCCGTAAAACCCTCCGCATGTTCCTCACCCGCCCCGACCGCCGCCGCGTCCCTCGCTCATCGGATTCTCCTAACGACGAAGATCGCGGAAATGACGACCCGCCGGAGAAGAGGAAGGAGGAGGCTCGGGTCCGCCGTAAGCTCAAGGACCTGTTCGTGTCGTCTCCGCCGCCGCTGGAGGATAACAGGAGAGGCGGGGAGGTGGGAGACGGTGAGGAGCGGGGATTGCTGTCGGCGACGGGCGGCGGTGTCGGTGGCATGGCGAGGACTCGGCGCGGCGGCGGGTTGTTGAGTCGGCCTTTAACGGCGTCGTTTAGGTGTAGATTGCTGAAGAGAGCTTGGCGACCTGTGCTGGTTCCTATTCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.44

Weight (kDa)

11.41

Isoelectric Point (pI)

85.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 4 cut(s) 67, 150, 189, 378
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 410
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 3 cut(s) 25, 244, 440
AluI AGCT 3 cut(s) 25, 244, 440
Alw26I GTCTC 2 cut(s) 270, 303
Ama87I CYCGRG 2 cut(s) 228, 467
AoxI GGCC 2 cut(s) 30, 398
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 3 cut(s) 44, 69, 378
AspS9I GGNCC 2 cut(s) 232, 250
AsuHPI GGTGA 2 cut(s) 121, 326
AvaI CYCGRG 2 cut(s) 228, 467
AvaII GGWCC 2 cut(s) 232, 250
BalI TGGCCA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 4 cut(s) 29, 90, 222, 423
BcoDI GTCTC 2 cut(s) 270, 303
BisI GCNGC 9 cut(s) 70, 103, 145, 148, 272, 275, 346, 379, 382
BlsI GCNGC 9 cut(s) 71, 104, 146, 149, 273, 276, 347, 380, 383
Bme18I GGWCC 2 cut(s) 232, 250
BmeT110I CYCGRG 2 cut(s) 228, 467
BmgT120I GGNCC 2 cut(s) 232, 250
BmiI GGNNCC 2 cut(s) 233, 459
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 44
BseGI GGATG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 236, 332
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 4 cut(s) 67, 150, 189, 378
Bsh1285I CGRYCG 2 cut(s) 78, 142
BshFI GGCC 2 cut(s) 32, 400
BsiEI CGRYCG 2 cut(s) 78, 142
BsiHKCI CYCGRG 2 cut(s) 228, 467
BsiSI CCGG 2 cut(s) 54, 206
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 270, 303
BsmBI CGTCTC 2 cut(s) 270, 303
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 32, 400
BsoBI CYCGRG 2 cut(s) 228, 467
Bsp143I GATC 1 cut(s) 184
BspANI GGCC 2 cut(s) 32, 400
BspFNI CGCG 4 cut(s) 67, 150, 189, 378
BspLI GGNNCC 2 cut(s) 233, 459
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 44
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 206, 428
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 4 cut(s) 67, 150, 189, 378
BstHHI GCGC 3 cut(s) 44, 69, 378
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 2 cut(s) 270, 303
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 2 cut(s) 78, 142
BstMWI GCNNNNNNNGC 6 cut(s) 50, 66, 141, 156, 328, 451
BstNSI RCATGY 1 cut(s) 124
BstUI CGCG 4 cut(s) 67, 150, 189, 378
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 32, 400
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 3 cut(s) 44, 69, 378
Cfr13I GGNCC 2 cut(s) 232, 250
CseI GACGC 2 cut(s) 139, 399
CviAII CATG 2 cut(s) 121, 361
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 206, 428
EarI CTCTTC 2 cut(s) 206, 428
EciI GGCGGA 3 cut(s) 89, 224, 258
Eco47I GGWCC 2 cut(s) 232, 250
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 228, 467
EcoO109I RGGNCCY 1 cut(s) 250
Esp3I CGTCTC 2 cut(s) 270, 303
FaeI CATG 2 cut(s) 124, 364
FaiI YATR 2 cut(s) 122, 362
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 120, 360
FauI CCCGC 5 cut(s) 140, 210, 290, 315, 377
Fnu4HI GCNGC 9 cut(s) 70, 103, 145, 148, 272, 275, 346, 379, 382
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 9 cut(s) 70, 103, 145, 148, 272, 275, 346, 379, 382
GlaI GCGC 3 cut(s) 43, 68, 377
GluI GCNGC 9 cut(s) 70, 103, 145, 148, 272, 275, 346, 379, 382
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 32, 400
HapII CCGG 2 cut(s) 54, 206
HgaI GACGC 2 cut(s) 139, 399
HhaI GCGC 3 cut(s) 44, 69, 378
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 2 cut(s) 124, 364
Hin6I GCGC 3 cut(s) 42, 67, 376
HinP1I GCGC 3 cut(s) 42, 67, 376
HinfI GANTC 3 cut(s) 167, 370, 394
HpaII CCGG 2 cut(s) 54, 206
HphI GGTGA 2 cut(s) 121, 326
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 467
Hpy99I CGWCG 5 cut(s) 50, 53, 182, 343, 415
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 66, 141, 156, 328, 451
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 2 cut(s) 124, 364
HspAI GCGC 3 cut(s) 42, 67, 376
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 67, 94, 219, 263, 266, 274, 440, 462
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 1 cut(s) 186
MbiI CCGCTC 1 cut(s) 322
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 194, 223, 445
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 2 cut(s) 364, 403
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 2 cut(s) 54, 206
MvnI CGCG 4 cut(s) 67, 150, 189, 378
MwoI GCNNNNNNNGC 6 cut(s) 50, 66, 141, 156, 328, 451
NdeII GATC 1 cut(s) 184
NlaIII CATG 2 cut(s) 124, 364
NlaIV GGNNCC 2 cut(s) 233, 459
NmeAIII GCCGAG 1 cut(s) 352
NspI RCATGY 1 cut(s) 124
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 235
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 9 cut(s) 71, 104, 146, 149, 273, 276, 347, 380, 383
PleI GAGTC 2 cut(s) 364, 402
PpsI GAGTC 2 cut(s) 364, 402
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 233, 459
PspPI GGNCC 2 cut(s) 232, 250
PspPPI RGGWCCY 1 cut(s) 250
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 9 cut(s) 70, 103, 145, 148, 272, 275, 346, 379, 382
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 232, 250
SchI GAGTC 2 cut(s) 364, 403
SetI ASST 9 cut(s) 11, 27, 99, 246, 255, 306, 422, 442, 451
SinI GGWCC 2 cut(s) 232, 250
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 17
TaaI ACNGT 1 cut(s) 314
TasI AATT 1 cut(s) 17
TauI GCSGC 8 cut(s) 105, 147, 150, 274, 277, 348, 381, 384
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseI GCWGC 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 232, 250
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.