Rroxscaffold_4G00323890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016547
Physical Location & Seq
Reverse (-)
55106090 .. 55107011
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323890.1

Sequence Viewer

Length: 675 bp
ATGCCAACCTTGCAAAAATTCAAGCTCCTCGCCACTCAATGCTCCGTCATCGCCGGAAGCCCCACGCGCAGCCCATCCGCCAGCCCCGTCATCCACCTCCGCCGCCGCAAAACCCTCAGAATGTTCCTCACCCGCCCCGACCGCCGCCGAATGCCTCGCCGGAGTACCTCCTCCGAAGCTCCCAACAACGACGACGACGACGACGACGACGACGGTCGCGAAAATGACGACCCGCCGGAGAGGAAGAACAGCAAGGAGCAGCAGGCTCGGGTCCGCCGTAAGCTCAGGGACCTGTTCGTGTCGTCGCCGCCGCCGCTGGAGGATGGCAGGAGAGGCCGAGAGGTGGAAGATGGAGAGGAGCGAGGTTTGCTGTCGGCGACGGACGTCGGCGGCGGCGTCGGTGGCTTGGCGAGGACTCGGCGCGGCGGGTTGTTAAGTCGACCCCTGACGGCGTCGTTTAGGTGTAGATTGCTGAAGAGGGCTTGGCGACCCGTGCTGGTTCCTATTCCCGAGATATCACTACAAGGTTCGTCTGAAACACTTACATTCTTGAAGCCGAAAGCTGATTACTTTGACACTTGCCGATATTATCATAGTGCATTGTTGCCTACTAGAACGAAAAAGCCCGAGGCAGTGTTGCCAACCACATTCGGCACCATTGAAGCCGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

10.0

Isoelectric Point (pI)

76.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 653
AccI GTMKAC 1 cut(s) 439
AccII CGCG 3 cut(s) 67, 219, 423
AcsI RAATTY 2 cut(s) 17, 668
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 3 cut(s) 384, 396, 452
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 22, 553, 662
AluBI AGCT 4 cut(s) 25, 179, 283, 563
AluI AGCT 4 cut(s) 25, 179, 283, 563
Ama87I CYCGRG 3 cut(s) 267, 509, 626
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 69, 259
ApoI RAATTY 2 cut(s) 17, 668
AspLEI GCGC 2 cut(s) 69, 423
AspS9I GGNCC 2 cut(s) 271, 289
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 3 cut(s) 267, 509, 626
AvaII GGWCC 2 cut(s) 271, 289
BanI GGYRCC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 81, 271
BccI CCATC 3 cut(s) 82, 317, 344
BceAI ACGGC 2 cut(s) 261, 465
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BfaI CTAG 1 cut(s) 612
Bme18I GGWCC 2 cut(s) 271, 289
BmeT110I CYCGRG 3 cut(s) 267, 509, 626
BmgT120I GGNCC 2 cut(s) 271, 289
BmiI GGNNCC 4 cut(s) 272, 290, 501, 655
BoxI GACNNNNGTC 2 cut(s) 213, 383
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 284
BsaHI GRCGYC 3 cut(s) 384, 396, 452
BsaJI CCNNGG 1 cut(s) 627
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 3 cut(s) 74, 90, 328
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 130, 298
BseRI GAGGAG 3 cut(s) 17, 160, 371
BseXI GCAGC 2 cut(s) 81, 271
Bsh1236I CGCG 3 cut(s) 67, 219, 423
Bsh1285I CGRYCG 2 cut(s) 142, 217
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 653
BsiEI CGRYCG 2 cut(s) 142, 217
BsiHKCI CYCGRG 3 cut(s) 267, 509, 626
BsiSI CCGG 3 cut(s) 54, 160, 236
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 3 cut(s) 267, 509, 626
Bsp68I TCGCGA 1 cut(s) 219
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 129, 297
BspFNI CGCG 3 cut(s) 67, 219, 423
BspLI GGNNCC 4 cut(s) 272, 290, 501, 655
BspT107I GGYRCC 1 cut(s) 653
BssECI CCNNGG 1 cut(s) 627
BssNI GRCGYC 3 cut(s) 384, 396, 452
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 470
BstACI GRCGYC 3 cut(s) 384, 396, 452
BstC8I GCNNGC 2 cut(s) 82, 264
BstDEI CTNAG 2 cut(s) 116, 284
BstF5I GGATG 3 cut(s) 74, 90, 328
BstFNI CGCG 3 cut(s) 67, 219, 423
BstHHI GCGC 2 cut(s) 69, 423
BstMCI CGRYCG 2 cut(s) 142, 217
BstMWI GCNNNNNNNGC 8 cut(s) 10, 66, 141, 313, 333, 367, 402, 493
BstPAI GACNNNNGTC 2 cut(s) 213, 383
BstUI CGCG 3 cut(s) 67, 219, 423
BstV1I GCAGC 2 cut(s) 81, 271
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 74, 90, 328
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 639
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 82, 264
CfoI GCGC 2 cut(s) 69, 423
Cfr13I GGNCC 2 cut(s) 271, 289
CseI GACGC 2 cut(s) 385, 441
Csp6I GTAC 1 cut(s) 165
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 116, 284
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 3 cut(s) 67, 89, 263
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 271, 289
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 3 cut(s) 267, 509, 626
EcoO109I RGGNCCY 1 cut(s) 289
EcoRV GATATC 1 cut(s) 516
FaiI YATR 1 cut(s) 594
FaqI GGGAC 1 cut(s) 302
FauI CCCGC 3 cut(s) 140, 240, 419
FblI GTMKAC 1 cut(s) 439
FokI GGATG 3 cut(s) 61, 77, 335
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 68, 422
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 336
HapII CCGG 3 cut(s) 54, 160, 236
HgaI GACGC 2 cut(s) 385, 441
HhaI GCGC 2 cut(s) 69, 423
Hin1I GRCGYC 3 cut(s) 384, 396, 452
Hin6I GCGC 2 cut(s) 67, 421
HinP1I GCGC 2 cut(s) 67, 421
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HinfI GANTC 1 cut(s) 415
HpaII CCGG 3 cut(s) 54, 160, 236
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 3 cut(s) 119, 175, 535
Hpy188III TCNNGA 3 cut(s) 218, 509, 550
Hpy8I GTNNAC 1 cut(s) 440
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 13, 599
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 66, 141, 313, 333, 367, 402, 493
HpyF3I CTNAG 2 cut(s) 116, 284
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 3 cut(s) 384, 396, 452
HspAI GCGC 2 cut(s) 67, 421
LmnI GCTCC 5 cut(s) 30, 47, 184, 256, 358
Lsp1109I GCAGC 2 cut(s) 81, 271
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 384
MboII GAAGA 3 cut(s) 256, 359, 487
MluCI AATT 2 cut(s) 17, 668
MlyI GAGTC 1 cut(s) 409
MseI TTAA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 3 cut(s) 54, 160, 236
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 3 cut(s) 67, 219, 423
MwoI GCNNNNNNNGC 8 cut(s) 10, 66, 141, 313, 333, 367, 402, 493
NlaIV GGNNCC 4 cut(s) 272, 290, 501, 655
NmeAIII GCCGAG 2 cut(s) 362, 397
NruI TCGCGA 1 cut(s) 219
PcsI WCGNNNNNNNCGW 8 cut(s) 195, 198, 201, 204, 207, 216, 274, 393
PctI GAATGC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 451
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 289
PshAI GACNNNNGTC 2 cut(s) 213, 383
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 4 cut(s) 272, 290, 501, 655
PspPI GGNCC 2 cut(s) 271, 289
PspPPI RGGWCCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 451
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 434
Sau96I GGNCC 2 cut(s) 271, 289
SchI GAGTC 1 cut(s) 409
SinI GGWCC 2 cut(s) 271, 289
Sse9I AATT 2 cut(s) 17, 668
SspMI CTAG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 439
TasI AATT 2 cut(s) 17, 668
TauI GCSGC 9 cut(s) 105, 108, 147, 310, 313, 316, 393, 396, 426
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 639
TseI GCWGC 2 cut(s) 69, 259
TspGWI ACGGA 2 cut(s) 34, 395
TspRI CASTG 1 cut(s) 639
Tth111I GACNNNGTC 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 271, 289
XapI RAATTY 2 cut(s) 17, 668
XmiI GTMKAC 1 cut(s) 439
XspI CTAG 1 cut(s) 612
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.