Prupe.3G146400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016547
Physical Location & Seq
Reverse (-)
16019145 .. 16020676
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G146400.1

Sequence Viewer

Length: 495 bp
ATGGCGACCTTGCAGAAATTCAAACTCTTAGCCACCCAATGCGCCGTAGCCGGAAGCCCCACCCGGAGCCCATCCGCCAGCCCAGTCATTCACCTCCGCCGCCGCAAAACCCTGAGAATGTTCCTCTCCCGCACCGACCGCCGCCGATTTACTAGCCGGAGCAACTCCGACCCTCCAGTAATCAACGGCGACGACGAAGATGACGATGATCGGCCGCAGAAGAGCAAGGAGGTCGCGAAGGTTCGGCACAAGCTTAAGGACCTCTTCGTCTCCTCGCCGCCTTTAGAAGATAGGGTTTCGGATAGGAGCCGAGGAATTGAACAAGAAGAAGAGCGAGGGTTGTTGTCGGCGACCGGAAGTGTCGGTGGTGTCGGTTCTGGTGGCTTCGCGAGCCGGCGCGGTGCAGGCATGTCGCTTCGGCCATTAGCGGCGTCGTTTCGATGTAGATTACTGAAACGAGCTTGGCGGCCTGTGCTCGTCACCATCCCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.17

Weight (kDa)

10.96

Isoelectric Point (pI)

79.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccII CGCG 3 cut(s) 236, 389, 399
AcoI YGGCCR 2 cut(s) 212, 419
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 431
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 22, 320
AluBI AGCT 2 cut(s) 253, 461
AluI AGCT 2 cut(s) 253, 461
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 3 cut(s) 212, 419, 467
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 44, 399
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 83, 472
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 2 cut(s) 79, 491
BceAI ACGGC 2 cut(s) 29, 202
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 393, 427
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 254
BisI GCNGC 7 cut(s) 100, 103, 142, 215, 278, 429, 467
BlsI GCNGC 7 cut(s) 101, 104, 143, 216, 279, 430, 468
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 68, 308
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 353
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 83, 176
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 71, 483
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 83, 176
BseRI GAGGAG 1 cut(s) 262
BseX3I CGGCCG 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 3 cut(s) 236, 389, 399
Bsh1285I CGRYCG 3 cut(s) 139, 215, 354
BshFI GGCC 3 cut(s) 214, 421, 469
BsiEI CGRYCG 3 cut(s) 139, 215, 354
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 5 cut(s) 51, 64, 157, 354, 394
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsnI GGCC 3 cut(s) 214, 421, 469
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 71, 477
Bsp143I GATC 1 cut(s) 208
Bsp68I TCGCGA 2 cut(s) 236, 389
BspANI GGCC 3 cut(s) 214, 421, 469
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 3 cut(s) 236, 389, 399
BspLI GGNNCC 2 cut(s) 68, 308
BspQI GCTCTTC 2 cut(s) 215, 324
BspTI CTTAAG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 2 cut(s) 83, 176
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 431
Bst6I CTCTTC 3 cut(s) 215, 269, 324
BstACI GRCGYC 1 cut(s) 431
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 79, 391, 395, 406
BstDEI CTNAG 2 cut(s) 28, 113
BstF5I GGATG 2 cut(s) 71, 483
BstFNI CGCG 3 cut(s) 236, 389, 399
BstHHI GCGC 2 cut(s) 44, 399
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 208
BstMCI CGRYCG 3 cut(s) 139, 215, 354
BstMWI GCNNNNNNNGC 4 cut(s) 138, 390, 405, 472
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 62
BstUI CGCG 3 cut(s) 236, 389, 399
BstZI CGGCCG 1 cut(s) 212
BsuRI GGCC 3 cut(s) 214, 421, 469
BtsCI GGATG 2 cut(s) 71, 483
BtuMI TCGCGA 2 cut(s) 236, 389
Cac8I GCNNGC 4 cut(s) 79, 391, 395, 406
CfoI GCGC 2 cut(s) 44, 399
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 420
CviAII CATG 1 cut(s) 409
DdeI CTNAG 2 cut(s) 28, 113
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 212, 419
EagI CGGCCG 1 cut(s) 212
Eam1104I CTCTTC 3 cut(s) 215, 269, 324
EarI CTCTTC 3 cut(s) 215, 269, 324
EciI GGCGGA 2 cut(s) 64, 86
EclXI CGGCCG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 412
FaiI YATR 1 cut(s) 410
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 1 cut(s) 408
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 7 cut(s) 100, 103, 142, 215, 278, 429, 467
FokI GGATG 2 cut(s) 58, 470
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 7 cut(s) 100, 103, 142, 215, 278, 429, 467
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 43, 398
GluI GCNGC 7 cut(s) 100, 103, 142, 215, 278, 429, 467
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 3 cut(s) 214, 421, 469
HapII CCGG 5 cut(s) 51, 64, 157, 354, 394
HgaI GACGC 1 cut(s) 420
HhaI GCGC 2 cut(s) 44, 399
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 2 cut(s) 42, 397
HinP1I GCGC 2 cut(s) 42, 397
HindIII AAGCTT 1 cut(s) 251
HpaII CCGG 5 cut(s) 51, 64, 157, 354, 394
HphI GGTGA 2 cut(s) 83, 472
Hpy188I TCNGA 2 cut(s) 169, 301
Hpy188III TCNNGA 2 cut(s) 235, 388
Hpy99I CGWCG 3 cut(s) 194, 197, 436
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 13, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 390, 405, 472
HpyF3I CTNAG 2 cut(s) 28, 113
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 2 cut(s) 42, 397
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 1 cut(s) 208
LguI GCTCTTC 2 cut(s) 215, 324
LmnI GCTCC 3 cut(s) 66, 159, 306
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 478
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 6 cut(s) 209, 232, 256, 299, 338, 341
MhlI GDGCHC 2 cut(s) 71, 477
MluCI AATT 2 cut(s) 17, 315
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 104, 134, 183, 223, 272, 283, 305, 329
MroNI GCCGGC 1 cut(s) 393
MseI TTAA 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 5 cut(s) 51, 64, 157, 354, 394
MspR9I CCNGG 1 cut(s) 64
MvnI CGCG 3 cut(s) 236, 389, 399
MwoI GCNNNNNNNGC 4 cut(s) 138, 390, 405, 472
NaeI GCCGGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 64
NdeII GATC 1 cut(s) 208
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 68, 308
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 478
NruI TCGCGA 2 cut(s) 236, 389
NspI RCATGY 1 cut(s) 412
PciSI GCTCTTC 2 cut(s) 215, 324
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 201
PdiI GCCGGC 1 cut(s) 395
PkrI GCNGC 7 cut(s) 101, 104, 143, 216, 279, 430, 468
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 68, 308
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
RruI TCGCGA 2 cut(s) 236, 389
SapI GCTCTTC 2 cut(s) 215, 324
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 7 cut(s) 100, 103, 142, 215, 278, 429, 467
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 71, 477
SetI ASST 7 cut(s) 11, 96, 234, 243, 255, 264, 463
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 17, 315
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 62
TaqI TCGA 1 cut(s) 439
TasI AATT 2 cut(s) 17, 315
TauI GCSGC 7 cut(s) 102, 105, 144, 217, 280, 431, 469
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 478
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 412
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.