Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011256

Physical Location & Seq

Genomic Coordinates Reverse (-)

25236781 .. 25238216

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGACAGAGAAGAAAAATAGCAAGGAGGTAGCGCTAAAACACCTAGCGTTCGTGAGAATTGCAACGATCCATATTCTGGCTTCCGTCTCAAATCTCTACGAATACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGTGGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGATGTTCCTGATTCTCTCCTGGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTACAAGTTTGATGAGCATGCTCCTCCAATGGCTAAGAAAGTGGTGAATCAAGCACATGTATTGATCTACAAGGCGACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAGCTGCGTTTAACTATGCTGCAACTGAGTACAAGTTTTTCGTTGTGACCAACTCGGTTAAAGTCTGGGCTAAACTTAACCAGTATAAACCAATCCATGCAATGGGTGACAAAGCTTTGCCTGTGGCTGCACACTTTTCCAGTCGGTACAACGATTTGGTGACTGATATGACTAATATGGGTTACTCTTTGGTTGGTTATCTTCCGTTGGTTCCTGTTGATGACATTGTTAAGGCTTATGAAAAGGAAGATGCAAGGAGAAAGAAAGGAGGGGATACGGCTGGAAAGAAAGGAGAGACTACTGATGCGGCTGATGGTGATAAATCATCGTCTGATTCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

240

Amino Acids

26.42

Weight (kDa)

8.9

Isoelectric Point (pI)

21.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	8 - 207	2.1e-79	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67360 AT1G67360
fragaria_vesca	FvH4_4g23790
malus_domestica	MD01G1161800.v1.1 MD08G1165600.v1.1 MD13G1118800.v1.1 MD16G1119000.v1.1
prunus_persica	Prupe.1G226000_v2.0.a1
pyrus_communis	pycom13g10370 pycom16g10190
rosa_chinensis	RchiOBHm_Chr4g0430281
rosa_laevigata	RLG00000006988
rosa_multiflora	Rmu_sc0001089.1_g000026
rosa_roxburghii	Rroxscaffold_5G00372080
rosa_rugosa	Rorug04G0242400
rosa_samantha	Rh4AG298800 Rh4BG305400 Rh4CG320900 Rh4DG302700
rosa_wichuraiana	Rw4G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	79, 481
AciI	CCGC	2 cut(s)	138, 686
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	4 cut(s)	257, 367, 410, 527
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	79, 481
AflIII	ACRYGT	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	341, 348, 383, 494
AluI	AGCT	4 cut(s)	341, 348, 383, 494
Alw26I	GTCTC	2 cut(s)	94, 668
AlwI	GGATC	1 cut(s)	64
Aor51HI	AGCGCT	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	383, 398, 506
ApoI	RAATTY	1 cut(s)	194
ArsI	GACNNNNNNTTYG	4 cut(s)	109, 141, 147, 179
AsiGI	ACCGGT	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	125, 374
AsuHPI	GGTGA	7 cut(s)	157, 169, 257, 310, 497, 550, 707
AvaII	GGWCC	2 cut(s)	125, 374
BbvI	GCAGC	3 cut(s)	370, 385, 493
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	3 cut(s)	125, 146, 672
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	94, 668
BfaI	CTAG	2 cut(s)	47, 230
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	4 cut(s)	384, 399, 507, 687
BlsI	GCNGC	4 cut(s)	385, 400, 508, 688
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	125, 374
BmgT120I	GGNCC	2 cut(s)	125, 374
BmiI	GGNNCC	3 cut(s)	160, 376, 591
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	619, 673
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	122, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 481
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	460, 519
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	79, 481
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	460, 519
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	370, 385, 493
BsgI	GTGCAG	1 cut(s)	492
BshTI	ACCGGT	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	123, 369
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	79, 481
BsmAI	GTCTC	2 cut(s)	94, 668
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	69, 232, 318
BspACI	CCGC	2 cut(s)	138, 686
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	160, 376, 591
BspPI	GGATC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	460, 519
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	3 cut(s)	69, 232, 318
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	288, 405
BstDSI	CCRYGG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	72, 235, 321
BstMAI	GTCTC	2 cut(s)	94, 668
BstMBI	GATC	3 cut(s)	69, 232, 318
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	275, 314
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	370, 385, 493
BsuI	GTATCC	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	125, 374
Csp6I	GTAC	4 cut(s)	256, 366, 409, 526
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	3 cut(s)	272, 311, 476
CviQI	GTAC	4 cut(s)	256, 366, 409, 526
DdeI	CTNAG	2 cut(s)	288, 405
DpnI	GATC	3 cut(s)	71, 234, 320
DpnII	GATC	3 cut(s)	69, 232, 318
DraIII	CACNNNGTG	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	125, 374
Eco47III	AGCGCT	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	275, 314, 479
FaiI	YATR	9 cut(s)	75, 273, 312, 396, 465, 477, 548, 557, 618
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	3 cut(s)	271, 310, 475
Fnu4HI	GCNGC	4 cut(s)	384, 399, 507, 687
Fsp4HI	GCNGC	4 cut(s)	384, 399, 507, 687
FspBI	CTAG	2 cut(s)	47, 230
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	4 cut(s)	384, 399, 507, 687
HaeII	RGCGCY	1 cut(s)	38
HapII	CCGG	2 cut(s)	123, 369
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	275, 314, 479
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	2 cut(s)	346, 492
HinfI	GANTC	3 cut(s)	212, 301, 713
HpaII	CCGG	2 cut(s)	123, 369
HphI	GGTGA	7 cut(s)	157, 169, 257, 310, 497, 550, 707
Hpy188I	TCNGA	3 cut(s)	192, 712, 718
Hpy188III	TCNNGA	3 cut(s)	55, 209, 230
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	65, 401, 479, 509, 632
HpyF3I	CTNAG	2 cut(s)	288, 405
Hsp92II	CATG	3 cut(s)	275, 314, 479
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	69, 232, 318
LmnI	GCTCC	2 cut(s)	158, 280
Lsp1109I	GCAGC	3 cut(s)	370, 385, 493
LweI	GCATC	2 cut(s)	619, 673
MaeI	CTAG	2 cut(s)	47, 230
MaeIII	GTNAC	6 cut(s)	163, 175, 424, 485, 538, 560
MalI	GATC	3 cut(s)	71, 234, 320
MboI	GATC	3 cut(s)	69, 232, 318
MboII	GAAGA	3 cut(s)	25, 572, 638
MluCI	AATT	2 cut(s)	60, 194
MnlI	CCTC	5 cut(s)	22, 138, 288, 352, 641
MseI	TTAA	4 cut(s)	390, 438, 456, 609
MspI	CCGG	2 cut(s)	123, 369
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	69, 232, 318
NlaIII	CATG	3 cut(s)	275, 314, 479
NlaIV	GGNNCC	3 cut(s)	160, 376, 591
NmuCI	GTSAC	5 cut(s)	163, 175, 424, 485, 538
NspI	RCATGY	2 cut(s)	275, 314
PaeI	GCATGC	1 cut(s)	275
PciI	ACATGT	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	212, 301, 713
PflMI	CCANNNNNTGG	2 cut(s)	79, 481
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	385, 400, 508, 688
PscI	ACATGT	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	160, 376, 591
PspPI	GGNCC	2 cut(s)	125, 374
RsaI	GTAC	4 cut(s)	257, 367, 410, 527
RsaNI	GTAC	4 cut(s)	256, 366, 409, 526
SaqAI	TTAA	4 cut(s)	390, 438, 456, 609
SatI	GCNGC	4 cut(s)	384, 399, 507, 687
Sau3AI	GATC	3 cut(s)	69, 232, 318
Sau96I	GGNCC	2 cut(s)	125, 374
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	33, 48, 153, 243, 343, 350, 385, 496
SfaNI	GCATC	2 cut(s)	619, 673
SinI	GGWCC	2 cut(s)	125, 374
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	60, 194
SsiI	CCGC	2 cut(s)	138, 686
SspMI	CTAG	2 cut(s)	47, 230
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	60, 194
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	3 cut(s)	212, 301, 713
Tru1I	TTAA	4 cut(s)	390, 438, 456, 609
Tru9I	TTAA	4 cut(s)	390, 438, 456, 609
TseFI	GTSAC	5 cut(s)	163, 175, 424, 485, 538
TseI	GCWGC	3 cut(s)	383, 398, 506
Tsp45I	GTSAC	5 cut(s)	163, 175, 424, 485, 538
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	2 cut(s)	76, 573
Van91I	CCANNNNNTGG	2 cut(s)	79, 481
VpaK11BI	GGWCC	2 cut(s)	125, 374
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	229
XceI	RCATGY	2 cut(s)	275, 314
XspI	CTAG	2 cut(s)	47, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.