Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011256

Physical Location & Seq

Genomic Coordinates Forward (+)

19499349 .. 19500014

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1165600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCACCATCCATAAGGGAGTAGAGATCGGTAAGGAGAAGGAACTGAAGCACCTAGGGTTTCTGAGGGTGGCGGCGATTCAGACCCTGGTGTGCATTTCGAATCTGTACGATTACGCCAAGCAGAACTCCGGGCCGCTCAGATCGACGGTCGGGGCGGTGGAGGGAGCGGTCACCGCCGTCGTTGGTCCCGTTTACCGAAAGTTTAAGGGCGTTCCTGACGATGTCCTCACTTTCCTCGACGCCAAGGTGGATGAAGCCACAGAAAAGTTCGACAAGCATGCTTCACCTGTGGCCAAGCAGGTTGCAAGCCAAGCGCACTGCTTGATCCAGAAAGCAGCGGAAAAGGGGCAGAGAATTGTAAGGAAGGCTGAAACTGGCGGTCTATGCGCAGCTATTCACTATGCAGCTACTGAGTACAAGAACTTTGTCTTGAACCAATCTGTGAAGTTGTGGGTCGGACTCAACAAGTACCCTTCCATCCACACAGTGGCACAGAAGGCTGCACCAATCGCTGCGCACTGGTCTGGCAAATACAACCACACCGTAAAGGACTTGACCCGTAAGGGCTATGCCATCTTCGGCTATCTACCCCTGGTTCCGATCGATGAGATGTCCAAGGCAGTCGAAAAGGGAGAGACGGAGGCTGATTTTATCGTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

222

Amino Acids

24.11

Weight (kDa)

9.18

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	12 - 210	3e-81	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67360 AT1G67360
fragaria_vesca	FvH4_4g23790
malus_domestica	MD01G1161800.v1.1 MD08G1165600.v1.1 MD13G1118800.v1.1 MD16G1119000.v1.1
prunus_persica	Prupe.1G226000_v2.0.a1
pyrus_communis	pycom13g10370 pycom16g10190
rosa_chinensis	RchiOBHm_Chr4g0430281
rosa_laevigata	RLG00000006988
rosa_multiflora	Rmu_sc0001089.1_g000026
rosa_roxburghii	Rroxscaffold_5G00372080
rosa_rugosa	Rorug04G0242400
rosa_samantha	Rh4AG298800 Rh4BG305400 Rh4CG320900 Rh4DG302700
rosa_wichuraiana	Rw4G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	391, 519
Acc36I	ACCTGC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccBSI	CCGCTC	2 cut(s)	139, 170
AciI	CCGC	7 cut(s)	74, 137, 158, 170, 177, 341, 381
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	2 cut(s)	3, 294
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	3 cut(s)	110, 419, 473
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	87, 594
AluBI	AGCT	2 cut(s)	395, 410
AluI	AGCT	2 cut(s)	395, 410
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	2 cut(s)	88, 413
AoxI	GGCC	3 cut(s)	3, 134, 294
ApeKI	GCWGC	5 cut(s)	338, 392, 407, 503, 515
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	3 cut(s)	319, 392, 520
AspS9I	GGNCC	2 cut(s)	134, 188
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	166, 279
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	55
BalI	TGGCCA	2 cut(s)	5, 296
BbvI	GCAGC	5 cut(s)	350, 404, 419, 490, 502
BccI	CCATC	3 cut(s)	17, 488, 584
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	2 cut(s)	89, 596
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	7 cut(s)	75, 137, 339, 393, 408, 504, 516
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	7 cut(s)	76, 138, 340, 394, 409, 505, 517
Bme1390I	CCNGG	3 cut(s)	89, 133, 596
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	134, 188
BmiI	GGNNCC	2 cut(s)	190, 600
BmrFI	CCNGG	3 cut(s)	89, 133, 596
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	5 cut(s)	55, 87, 246, 594, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	382, 527
BseBI	CCWGG	2 cut(s)	89, 596
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	5 cut(s)	55, 87, 246, 594, 618
BseGI	GGATG	3 cut(s)	9, 259, 480
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	3 cut(s)	56, 154, 405
BseNI	ACTGG	2 cut(s)	382, 527
BseXI	GCAGC	5 cut(s)	350, 404, 419, 490, 502
BsgI	GTGCAG	1 cut(s)	489
Bsh1285I	CGRYCG	2 cut(s)	153, 606
BshFI	GGCC	3 cut(s)	5, 136, 296
BshVI	ATCGAT	1 cut(s)	606
BsiEI	CGRYCG	2 cut(s)	153, 606
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	5, 136, 296
Bsp119I	TTCGAA	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	27, 143, 327, 603
BspACI	CCGC	7 cut(s)	74, 137, 158, 170, 177, 341, 381
BspANI	GGCC	3 cut(s)	5, 136, 296
BspCNI	CTCAG	3 cut(s)	57, 153, 406
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	190, 600
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	101
BsrBI	CCGCTC	2 cut(s)	139, 170
BsrI	ACTGG	2 cut(s)	382, 527
BssECI	CCNNGG	5 cut(s)	55, 87, 246, 594, 618
BssMI	GATC	4 cut(s)	27, 143, 327, 603
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	3 cut(s)	55, 246, 618
Bst2UI	CCWGG	2 cut(s)	89, 596
Bst4CI	ACNGT	3 cut(s)	151, 490, 547
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	282, 310
BstDEI	CTNAG	3 cut(s)	65, 140, 414
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	9, 259, 480
BstHHI	GCGC	3 cut(s)	319, 392, 520
BstKTI	GATC	4 cut(s)	30, 146, 330, 606
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	4 cut(s)	27, 143, 327, 603
BstMCI	CGRYCG	2 cut(s)	153, 606
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 314, 387, 500, 512
BstNI	CCWGG	2 cut(s)	89, 596
BstNSI	RCATGY	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	87, 131, 594
BstV1I	GCAGC	5 cut(s)	350, 404, 419, 490, 502
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	5, 136, 296
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	3 cut(s)	9, 259, 480
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	319, 495, 520
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	282, 310
CaiI	CAGNNNCTG	2 cut(s)	88, 413
CfoI	GCGC	3 cut(s)	319, 392, 520
Cfr13I	GGNCC	2 cut(s)	134, 188
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	109, 418, 472
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	3 cut(s)	109, 418, 472
DdeI	CTNAG	3 cut(s)	65, 140, 414
DpnI	GATC	4 cut(s)	29, 145, 329, 605
DpnII	GATC	4 cut(s)	27, 143, 327, 603
DraIII	CACNNNGTG	1 cut(s)	490
EaeI	YGGCCR	2 cut(s)	3, 294
Eco130I	CCWWGG	3 cut(s)	55, 246, 618
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	87, 594
EcoT14I	CCWWGG	3 cut(s)	55, 246, 618
ErhI	CCWWGG	3 cut(s)	55, 246, 618
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	15, 282, 388, 405, 573
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	7 cut(s)	75, 137, 339, 393, 408, 504, 516
FokI	GGATG	2 cut(s)	266, 467
Fsp4HI	GCNGC	7 cut(s)	75, 137, 339, 393, 408, 504, 516
FspBI	CTAG	1 cut(s)	56
FspI	TGCGCA	2 cut(s)	391, 519
GlaI	GCGC	3 cut(s)	318, 391, 519
GluI	GCNGC	7 cut(s)	75, 137, 339, 393, 408, 504, 516
HaeIII	GGCC	3 cut(s)	5, 136, 296
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	319, 392, 520
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	3 cut(s)	317, 390, 518
HinP1I	GCGC	3 cut(s)	317, 390, 518
HinfI	GANTC	3 cut(s)	79, 103, 462
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	166, 279
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	66, 84, 143, 461, 603
Hpy188III	TCNNGA	3 cut(s)	218, 331, 433
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	3 cut(s)	151, 185, 245
HpyAV	CCTTC	4 cut(s)	34, 361, 486, 493
HpyCH4III	ACNGT	3 cut(s)	151, 490, 547
HpyCH4V	TGCA	4 cut(s)	96, 308, 407, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 314, 387, 500, 512
HpyF3I	CTNAG	3 cut(s)	65, 140, 414
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	3 cut(s)	317, 390, 518
Kzo9I	GATC	4 cut(s)	27, 143, 327, 603
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	5 cut(s)	350, 404, 419, 490, 502
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	29, 145, 329, 605
MbiI	CCGCTC	2 cut(s)	139, 170
MboI	GATC	4 cut(s)	27, 143, 327, 603
MboII	GAAGA	1 cut(s)	571
MlsI	TGGCCA	2 cut(s)	5, 296
MluCI	AATT	2 cut(s)	357, 661
MluNI	TGGCCA	2 cut(s)	5, 296
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	60, 157, 239, 248, 637
Mox20I	TGGCCA	2 cut(s)	5, 296
MscI	TGGCCA	2 cut(s)	5, 296
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	2 cut(s)	5, 296
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	89, 133, 596
MvaI	CCWGG	2 cut(s)	89, 596
MwoI	GCNNNNNNNGC	5 cut(s)	176, 314, 387, 500, 512
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	4 cut(s)	27, 143, 327, 603
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	190, 600
NmuCI	GTSAC	1 cut(s)	172
NsbI	TGCGCA	2 cut(s)	391, 519
NspI	RCATGY	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	79, 103
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	7 cut(s)	76, 138, 340, 394, 409, 505, 517
Ple19I	CGATCG	1 cut(s)	606
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	87, 594
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	87, 594
PspN4I	GGNNCC	2 cut(s)	190, 600
PspPI	GGNCC	2 cut(s)	134, 188
PstNI	CAGNNNCTG	2 cut(s)	88, 413
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	606
RsaI	GTAC	3 cut(s)	110, 419, 473
RsaNI	GTAC	3 cut(s)	109, 418, 472
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	7 cut(s)	75, 137, 339, 393, 408, 504, 516
Sau3AI	GATC	4 cut(s)	27, 143, 327, 603
Sau96I	GGNCC	2 cut(s)	134, 188
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	89, 133, 596
SetI	ASST	6 cut(s)	57, 252, 292, 306, 397, 412
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	188
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	357, 661
SsiI	CCGC	7 cut(s)	74, 137, 158, 170, 177, 341, 381
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	87, 131, 594
StyI	CCWWGG	3 cut(s)	55, 246, 618
TaaI	ACNGT	3 cut(s)	151, 490, 547
TaqI	TCGA	6 cut(s)	101, 146, 240, 273, 606, 627
TasI	AATT	2 cut(s)	357, 661
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	77, 139
TfiI	GAWTC	2 cut(s)	79, 103
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	326, 495, 527
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	5 cut(s)	338, 392, 407, 503, 515
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	3 cut(s)	326, 495, 527
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmaJI	CCTAGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.