Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011256

Physical Location & Seq

Genomic Coordinates Reverse (-)

23931704 .. 23934190

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCCACCGCCAGCAGCGAGAAAGGGATAGAGATCAACAAGGAGAAAGAGTTGAAGCACCTAGGGATTTTTAGGGTTGTGGCGATTCACACTCTGGTGTGCTTGTCAAATCTGTACGATTACGCGAAGCAGAACTCTGGGCCTCTGAGATCGACGGTTGGGACTGTGGAGGGTGCTGTCACCGCCGTTGTTGGTCCTGTTTACCGGAAATTCAAGGGCGTCCCTGACGATGTCCTTGCTTTTCTCGACACCAAGGTAGATCAAGCCGCAGGCAAGTTTGATAAGCATGCTCCTCCATTGGCTAAGCAGGTTGCGAGCCAAACGCATGTTTTGATCCAAAAAACATTGGAAAAAGGCCAGAAGTTTGTAAAAGAGGCTCAAACTGGGGGTCCGCGCTCAGCAATTCATTATGCAGCTACAGAATATAAGCAGTTTGTCCTAAACCAATCTGTGAAGTTGTGGGTTGGACTGAACCAGTATCCTTCCATCCACAAAGTGGCAGAGAAGGCTGCACCAACTGCTGCCCAGTGGTCCGACAAATACAACCGCACCGTAAAGGACTTCACTCGGAAGGGTTATGCCATCTTCGGCTATTTACCCTTGGTTCCGATTGATGAGATATCCAAAGCAGTTGAGAAGGGTGAGGCAAAGAAGAAAGAAAATGCGGCTGTGCCTGTTTTGCATTCCTCTGATTCCTCTGATTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

237

Amino Acids

25.81

Weight (kDa)

9.33

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67360 AT1G67360
fragaria_vesca	FvH4_4g23790
malus_domestica	MD01G1161800.v1.1 MD08G1165600.v1.1 MD13G1118800.v1.1 MD16G1119000.v1.1
prunus_persica	Prupe.1G226000_v2.0.a1
pyrus_communis	pycom13g10370 pycom16g10190
rosa_chinensis	RchiOBHm_Chr4g0430281
rosa_laevigata	RLG00000006988
rosa_multiflora	Rmu_sc0001089.1_g000026
rosa_roxburghii	Rroxscaffold_5G00372080
rosa_rugosa	Rorug04G0242400
rosa_samantha	Rh4AG298800 Rh4BG305400 Rh4CG320900 Rh4DG302700
rosa_wichuraiana	Rw4G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccII	CGCG	2 cut(s)	125, 394
AciI	CCGC	6 cut(s)	9, 183, 267, 392, 547, 665
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	55, 214
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	3 cut(s)	3, 140, 355
ApeKI	GCWGC	4 cut(s)	15, 413, 509, 521
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspA2I	CCTAGG	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	4 cut(s)	140, 194, 389, 531
AsuHPI	GGTGA	2 cut(s)	172, 653
AvaII	GGWCC	3 cut(s)	194, 389, 531
AvrII	CCTAGG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	27, 425, 496, 508
BccI	CCATC	2 cut(s)	494, 590
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciVI	GTATCC	1 cut(s)	489
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	6 cut(s)	16, 267, 414, 510, 522, 666
BlnI	CCTAGG	1 cut(s)	61
BlpI	GCTNAGC	2 cut(s)	303, 397
BlsI	GCNGC	6 cut(s)	17, 268, 415, 511, 523, 667
Bme18I	GGWCC	3 cut(s)	194, 389, 531
BmgT120I	GGNCC	4 cut(s)	140, 194, 389, 531
BmiI	GGNNCC	2 cut(s)	390, 606
BmrI	ACTGGG	2 cut(s)	393, 520
BmuI	ACTGGG	2 cut(s)	393, 520
Bpu1102I	GCTNAGC	2 cut(s)	303, 397
BsaBI	GATNNNNATC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	61, 252, 600
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	3 cut(s)	388, 475, 526
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	61, 252, 600
BseGI	GGATG	1 cut(s)	486
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	137, 411
BseNI	ACTGG	3 cut(s)	388, 475, 526
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	27, 425, 496, 508
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	2 cut(s)	125, 394
BshFI	GGCC	3 cut(s)	5, 142, 357
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	175, 206
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	175, 206
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	5, 142, 357
Bsp143I	GATC	4 cut(s)	33, 149, 259, 333
Bsp1720I	GCTNAGC	2 cut(s)	303, 397
BspACI	CCGC	6 cut(s)	9, 183, 267, 392, 547, 665
BspANI	GGCC	3 cut(s)	5, 142, 357
BspCNI	CTCAG	2 cut(s)	138, 410
BspFNI	CGCG	2 cut(s)	125, 394
BspLI	GGNNCC	2 cut(s)	390, 606
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	388, 475, 526
BssECI	CCNNGG	3 cut(s)	61, 252, 600
BssMI	GATC	4 cut(s)	33, 149, 259, 333
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	3 cut(s)	61, 252, 600
Bst4CI	ACNGT	3 cut(s)	157, 166, 553
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	13, 271, 288, 316
BstDEI	CTNAG	3 cut(s)	146, 303, 397
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	125, 394
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	4 cut(s)	36, 152, 262, 336
BstMBI	GATC	4 cut(s)	33, 149, 259, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 506, 518, 679
BstNSI	RCATGY	2 cut(s)	290, 329
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	125, 394
BstV1I	GCAGC	4 cut(s)	27, 425, 496, 508
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	5, 142, 357
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	13, 271, 288, 316
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	4 cut(s)	140, 194, 389, 531
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	287, 326
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	146, 303, 397
DpnI	GATC	4 cut(s)	35, 151, 261, 335
DpnII	GATC	4 cut(s)	33, 149, 259, 333
DraIII	CACNNNGTG	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	61, 252, 600
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	3 cut(s)	194, 389, 531
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	3 cut(s)	61, 252, 600
ErhI	CCWWGG	3 cut(s)	61, 252, 600
FaeI	CATG	2 cut(s)	290, 329
FaiI	YATR	5 cut(s)	288, 327, 411, 426, 579
FaqI	GGGAC	2 cut(s)	175, 206
FatI	CATG	2 cut(s)	286, 325
Fnu4HI	GCNGC	6 cut(s)	16, 267, 414, 510, 522, 666
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	6 cut(s)	16, 267, 414, 510, 522, 666
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	6 cut(s)	16, 267, 414, 510, 522, 666
HaeIII	GGCC	3 cut(s)	5, 142, 357
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	290, 329
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	85, 692, 701
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	172, 653
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	7 cut(s)	147, 535, 570, 609, 691, 700, 706
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	4 cut(s)	492, 499, 565, 631
HpyCH4III	ACNGT	3 cut(s)	157, 166, 553
HpyCH4V	TGCA	3 cut(s)	413, 512, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 506, 518, 679
HpyF3I	CTNAG	3 cut(s)	146, 303, 397
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	290, 329
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	33, 149, 259, 333
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	4 cut(s)	27, 425, 496, 508
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	4 cut(s)	35, 151, 261, 335
MboI	GATC	4 cut(s)	33, 149, 259, 333
MboII	GAAGA	2 cut(s)	577, 664
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	209, 402
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	445, 558
MnlI	CCTC	7 cut(s)	153, 163, 303, 367, 637, 697, 706
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	682
MvnI	CGCG	2 cut(s)	125, 394
MwoI	GCNNNNNNNGC	4 cut(s)	182, 506, 518, 679
NdeII	GATC	4 cut(s)	33, 149, 259, 333
NlaIII	CATG	2 cut(s)	290, 329
NlaIV	GGNNCC	2 cut(s)	390, 606
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	290, 329
OliI	CACNNNNGTG	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	85, 692, 701
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	17, 268, 415, 511, 523, 667
PspN4I	GGNNCC	2 cut(s)	390, 606
PspPI	GGNCC	4 cut(s)	140, 194, 389, 531
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	6 cut(s)	16, 267, 414, 510, 522, 666
Sau3AI	GATC	4 cut(s)	33, 149, 259, 333
Sau96I	GGNCC	4 cut(s)	140, 194, 389, 531
SetI	ASST	4 cut(s)	63, 258, 312, 418
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	3 cut(s)	194, 389, 531
SmiMI	CAYNNNNRTG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	2 cut(s)	209, 402
SsiI	CCGC	6 cut(s)	9, 183, 267, 392, 547, 665
SspMI	CTAG	1 cut(s)	62
StyI	CCWWGG	3 cut(s)	61, 252, 600
TaaI	ACNGT	3 cut(s)	157, 166, 553
TaqI	TCGA	2 cut(s)	152, 246
TasI	AATT	2 cut(s)	209, 402
TauI	GCSGC	2 cut(s)	269, 668
TfiI	GAWTC	3 cut(s)	85, 692, 701
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	15, 413, 509, 521
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	533
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	194, 389, 531
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	2 cut(s)	290, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.