AT1G67440

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010219
Physical Location & Seq
Reverse (-)
25263757 .. 25265861
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67440.2

Sequence Viewer

Length: 1302 bp
ATGCTCAGAGCGAAGCACATCGGTAAAAATTACTCCTCCTCCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATTCTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGCTTTGTGTGGTGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTGGATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGACGTTCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATCAACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGGAATTGGAAACTTGGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAGATGGACTTGATGATATTGCGTTTGTTCTGAGAGATCAGACTTCTGTGATTGTTGGACCTAGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTGGTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGAGTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTACTGCCGGTTTCTGAAGGTGGTTACCTCGCTGATACTCCTGGCTTTAACCAGCCTAGTTTGCTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGATACGGAACATGATTGAGAGCGAAAAATGTGGATTCAGAGACTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAAGGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAAGAATTTCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGGTACAAGGTGGGAGACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCATAGGAGAGAGTCAAGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGTGATTTGTACATAGAGAACGACCCAATCGTCCAAGCCATTGAGAATGAGAATAAAAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
RsgA_GTPase

Protein Analysis

433

Amino Acids

49.15

Weight (kDa)

5.96

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 165 - 349 1e-47 RsgA GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1265
AccII CGCG 1 cut(s) 135
AclI AACGTT 1 cut(s) 366
AclWI GGATC 4 cut(s) 289, 344, 357, 405
AcsI RAATTY 1 cut(s) 1061
AcuI CTGAAG 1 cut(s) 852
AfaI GTAC 3 cut(s) 103, 1109, 1247
AfiI CCNNNNNNNGG 1 cut(s) 731
AgsI TTSAA 5 cut(s) 146, 192, 206, 235, 481
AjnI CCWGG 2 cut(s) 856, 982
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 8 cut(s) 95, 116, 155, 227, 446, 905, 1069, 1213
AluI AGCT 8 cut(s) 95, 116, 155, 227, 446, 905, 1069, 1213
Alw26I GTCTC 3 cut(s) 93, 954, 1113
AlwI GGATC 4 cut(s) 289, 344, 357, 405
AlwNI CAGNNNCTG 1 cut(s) 963
ApoI RAATTY 1 cut(s) 1061
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 3 cut(s) 39, 232, 1013
AsuII TTCGAA 1 cut(s) 1224
AvaII GGWCC 1 cut(s) 635
BamHI GGATCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 1239
BccI CCATC 2 cut(s) 534, 575
BceAI ACGGC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 858, 984
BciVI GTATCC 1 cut(s) 1026
BclI TGATCA 3 cut(s) 370, 751, 1203
BcoDI GTCTC 3 cut(s) 93, 954, 1113
BfaI CTAG 4 cut(s) 429, 639, 873, 902
BfuI GTATCC 1 cut(s) 1026
Bme1390I CCNGG 2 cut(s) 858, 984
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 3 cut(s) 351, 981, 1084
BmrFI CCNGG 2 cut(s) 858, 984
BmrI ACTGGG 1 cut(s) 1015
BmuI ACTGGG 1 cut(s) 1015
BpiI GAAGAC 1 cut(s) 1239
Bpu10I CCTNAGC 1 cut(s) 1070
Bpu14I TTCGAA 1 cut(s) 1224
BpuEI CTTGAG 3 cut(s) 75, 102, 431
BsaBI GATNNNNATC 1 cut(s) 1049
BsaJI CCNNGG 1 cut(s) 1145
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 3 cut(s) 50, 202, 1010
Bse8I GATNNNNATC 1 cut(s) 1049
BseBI CCWGG 2 cut(s) 858, 984
BseDI CCNNGG 1 cut(s) 1145
BseGI GGATG 3 cut(s) 545, 992, 1222
BseJI GATNNNNATC 1 cut(s) 1049
BseLI CCNNNNNNNGG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 19, 599, 909
BseNI ACTGG 3 cut(s) 50, 202, 1010
BseRI GAGGAG 3 cut(s) 25, 28, 691
Bsh1236I CGCG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 62, 824
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 3 cut(s) 93, 954, 1113
BsmI GAATGC 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 1224
Bsp1407I TGTACA 1 cut(s) 1245
Bsp143I GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
BspCNI CTCAG 3 cut(s) 18, 600, 910
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 3 cut(s) 351, 981, 1084
BspPI GGATC 4 cut(s) 289, 344, 357, 405
BspT104I TTCGAA 1 cut(s) 1224
BsrFI RCCGGY 1 cut(s) 823
BsrGI TGTACA 1 cut(s) 1245
BsrI ACTGG 3 cut(s) 50, 202, 1010
BssAI RCCGGY 1 cut(s) 823
BssECI CCNNGG 1 cut(s) 1145
BssMI GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
Bst2UI CCWGG 2 cut(s) 858, 984
Bst4CI ACNGT 4 cut(s) 106, 911, 1149, 1238
Bst6I CTCTTC 2 cut(s) 298, 498
BstAUI TGTACA 1 cut(s) 1245
BstBI TTCGAA 1 cut(s) 1224
BstC8I GCNNGC 1 cut(s) 968
BstDEI CTNAG 6 cut(s) 5, 82, 608, 918, 1070, 1158
BstDSI CCRYGG 1 cut(s) 1145
BstEII GGTNACC 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 3 cut(s) 545, 992, 1222
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 8 cut(s) 284, 352, 373, 400, 616, 754, 1047, 1206
BstMAI GTCTC 3 cut(s) 93, 954, 1113
BstMBI GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
BstMWI GCNNNNNNNGC 2 cut(s) 877, 1162
BstNI CCWGG 2 cut(s) 858, 984
BstNSI RCATGY 1 cut(s) 1139
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 856, 982
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 2 cut(s) 281, 349
BstYI RGATCY 2 cut(s) 281, 349
BsuI GTATCC 1 cut(s) 1026
BtgI CCRYGG 1 cut(s) 1145
BtsCI GGATG 3 cut(s) 545, 992, 1222
BtsIMutI CAGTG 3 cut(s) 907, 1213, 1243
Cac8I GCNNGC 1 cut(s) 968
CaiI CAGNNNCTG 1 cut(s) 963
CfoI GCGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 823
Cfr13I GGNCC 1 cut(s) 635
CseI GACGC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 102, 1108, 1246
CviAII CATG 4 cut(s) 686, 931, 1123, 1136
CviQI GTAC 3 cut(s) 102, 1108, 1246
DdeI CTNAG 6 cut(s) 5, 82, 608, 918, 1070, 1158
DpnI GATC 8 cut(s) 283, 351, 372, 399, 615, 753, 1046, 1205
DpnII GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
Eam1104I CTCTTC 2 cut(s) 298, 498
EarI CTCTTC 2 cut(s) 298, 498
Eco47I GGWCC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 852
Eco91I GGTNACC 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 856, 982
FaeI CATG 4 cut(s) 689, 934, 1126, 1139
FalI AAGNNNNNCTT 4 cut(s) 570, 602, 1003, 1035
FatI CATG 4 cut(s) 685, 930, 1122, 1135
FbaI TGATCA 3 cut(s) 370, 751, 1203
FokI GGATG 3 cut(s) 552, 999, 1229
FspBI CTAG 4 cut(s) 429, 639, 873, 902
GlaI GCGC 1 cut(s) 134
HapII CCGG 2 cut(s) 62, 824
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 135
Hin1II CATG 4 cut(s) 689, 934, 1126, 1139
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 6 cut(s) 86, 185, 449, 954, 1050, 1175
HpaII CCGG 2 cut(s) 62, 824
HphI GGTGA 3 cut(s) 39, 232, 1013
Hpy166II GTNNAC 2 cut(s) 420, 794
Hpy188I TCNGA 7 cut(s) 8, 340, 609, 618, 832, 959, 1049
Hpy188III TCNNGA 2 cut(s) 146, 917
Hpy8I GTNNAC 2 cut(s) 420, 794
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 84, 240, 827
HpyCH4III ACNGT 4 cut(s) 106, 911, 1149, 1238
HpyCH4IV ACGT 3 cut(s) 334, 366, 669
HpyCH4V TGCA 1 cut(s) 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 877, 1162
HpyF3I CTNAG 6 cut(s) 5, 82, 608, 918, 1070, 1158
HpySE526I ACGT 3 cut(s) 334, 366, 669
Hsp92II CATG 4 cut(s) 689, 934, 1126, 1139
HspAI GCGC 1 cut(s) 133
Ksp22I TGATCA 3 cut(s) 370, 751, 1203
Kzo9I GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
LmnI GCTCC 1 cut(s) 64
MaeI CTAG 4 cut(s) 429, 639, 873, 902
MaeII ACGT 3 cut(s) 334, 366, 669
MaeIII GTNAC 5 cut(s) 45, 163, 839, 886, 1001
MalI GATC 8 cut(s) 283, 351, 372, 399, 615, 753, 1046, 1205
MboI GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
MfeI CAATTG 1 cut(s) 1031
MflI RGATCY 2 cut(s) 281, 349
MluCI AATT 7 cut(s) 28, 157, 206, 509, 712, 1031, 1061
MlyI GAGTC 2 cut(s) 95, 1184
MmeI TCCRAC 4 cut(s) 241, 259, 613, 628
MnlI CCTC 7 cut(s) 46, 49, 299, 499, 669, 782, 854
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 4 cut(s) 467, 662, 864, 1151
MslI CAYNNNNRTG 2 cut(s) 690, 1127
MspI CCGG 2 cut(s) 62, 824
MspR9I CCNGG 2 cut(s) 858, 984
MunI CAATTG 1 cut(s) 1031
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 2 cut(s) 858, 984
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 877, 1162
NdeII GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
NlaIII CATG 4 cut(s) 689, 934, 1126, 1139
NlaIV GGNNCC 3 cut(s) 351, 981, 1084
NmuCI GTSAC 3 cut(s) 45, 163, 1001
NspI RCATGY 1 cut(s) 1139
NspV TTCGAA 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 1263
PctI GAATGC 1 cut(s) 895
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 4 cut(s) 185, 449, 954, 1050
PleI GAGTC 2 cut(s) 94, 1183
PpsI GAGTC 2 cut(s) 94, 1183
Psp1406I AACGTT 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 856, 982
PspEI GGTNACC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 856, 982
PspN4I GGNNCC 3 cut(s) 351, 981, 1084
PspPI GGNCC 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 963
PsuI RGATCY 2 cut(s) 281, 349
RsaI GTAC 3 cut(s) 103, 1109, 1247
RsaNI GTAC 3 cut(s) 102, 1108, 1246
RseI CAYNNNNRTG 2 cut(s) 690, 1127
SaqAI TTAA 4 cut(s) 467, 662, 864, 1151
Sau3AI GATC 8 cut(s) 281, 349, 370, 397, 613, 751, 1044, 1203
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 2 cut(s) 95, 1184
ScrFI CCNGG 2 cut(s) 858, 984
SfuI TTCGAA 1 cut(s) 1224
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 2 cut(s) 690, 1127
SmlI CTYRAG 3 cut(s) 90, 117, 410
SmoI CTYRAG 3 cut(s) 90, 117, 410
Sse9I AATT 7 cut(s) 28, 157, 206, 509, 712, 1031, 1061
SspMI CTAG 4 cut(s) 429, 639, 873, 902
StyD4I CCNGG 2 cut(s) 856, 982
TaaI ACNGT 4 cut(s) 106, 911, 1149, 1238
TaiI ACGT 3 cut(s) 337, 369, 672
TaqI TCGA 4 cut(s) 331, 656, 773, 1224
TasI AATT 7 cut(s) 28, 157, 206, 509, 712, 1031, 1061
TatI WGTACW 1 cut(s) 1245
TfiI GAWTC 4 cut(s) 185, 449, 954, 1050
Tru1I TTAA 4 cut(s) 467, 662, 864, 1151
Tru9I TTAA 4 cut(s) 467, 662, 864, 1151
TscAI CASTG 3 cut(s) 914, 1213, 1243
TseFI GTSAC 3 cut(s) 45, 163, 1001
Tsp45I GTSAC 3 cut(s) 45, 163, 1001
TspDTI ATGAA 3 cut(s) 317, 564, 1245
TspGWI ACGGA 1 cut(s) 940
TspRI CASTG 3 cut(s) 914, 1213, 1243
VpaK11BI GGWCC 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 729
XapI RAATTY 1 cut(s) 1061
XceI RCATGY 1 cut(s) 1139
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 4 cut(s) 429, 639, 873, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.