AT1G67460

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010219
Physical Location & Seq
Reverse (-)
25269428 .. 25271904
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67460.1

Sequence Viewer

Length: 900 bp
ATGCAGACATTTTCTTCCGCCGCCGCTCTCACCTCCATCCTCCGTCGTACAACGATCTATCACGGCGGATTTGGAACTGGTCTCCGAATCCGCCGCAGCTTTTATTTTCTCTCAGCGATACGACAAGAGAACCCTAATGTCACTAAAAATCCCCACCCGAACAAGACTATTCTCAGATCCTTCTTAGCTCCGGTTCTCCCGTTAGACGAAAAACCTAACCTCGTTGAGCTTCAAGCCATCGGTACAATCGCCACCGCTCTAGCTGACTACATGCGCGTCATTGTTCAAGATGTACCTGAGAGTGATAATGGAGAGGATGATAAGATTGGCGTTGAGTTGCTTTGTGTGGTGAGAAAGTTACTGAAGAAGATAGGTAGGACTGTTCTTGTTGGTGATAAAGTTCTCGTTGATAAAGTTGATTGGGTTGATCGGAGAGCTAAGATTATCAATGTGTTTGATCGAGTCTCGGAGGTTTTGGATCCACCGGTTGCGAATGTTGATCACTTAGTGATTCTGTTTTCTCTTGATCAACCTAAGATTGATCCATTTACACTTACTAGGTTCTTGGTGGAAGCTGAATCTATTGGAATTCGAATCACAGTTGCTTTGAACAAATGTGAACTCGTCACTCAAGAGGAAGTGGAATCTTGGAAGATAAGATTGCGTAGTTGGAACTATGAACCATTGTTCTGTAGTGTGGGAACTAAAGTCGGAATTGATGAGATTGCGTTTAACCTGCGAAATCAGACTTCTGTCATTGTTGGACCTAGTGGTGTTGGAAAGTCCAGCTTAATCAATATATTGAGAAGTAGCTACGGTGGTGACATTAAACACGAAGAAGTGTTTAAGCCTGCCAAAACAAGAAGAATAAAAAAAAGTGGTTTGAAGATCAGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
RsgA_GTPase

Protein Analysis

299

Amino Acids

33.47

Weight (kDa)

9.45

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 152 - 271 3.2e-31 RsgA GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 744
AccBSI CCGCTC 2 cut(s) 26, 257
AccII CGCG 1 cut(s) 276
AciI CCGC 7 cut(s) 18, 21, 24, 66, 91, 94, 255
AclWI GGATC 4 cut(s) 171, 473, 486, 536
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 1 cut(s) 383
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 3 cut(s) 49, 244, 294
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 4 cut(s) 233, 287, 610, 886
AluBI AGCT 8 cut(s) 99, 188, 229, 263, 437, 575, 789, 813
AluI AGCT 8 cut(s) 99, 188, 229, 263, 437, 575, 789, 813
Alw26I GTCTC 2 cut(s) 86, 469
AlwI GGATC 4 cut(s) 171, 473, 486, 536
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 588
AsiGI ACCGGT 1 cut(s) 484
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 4 cut(s) 22, 361, 404, 833
AsuII TTCGAA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 108
BccI CCATC 2 cut(s) 44, 245
BceAI ACGGC 1 cut(s) 79
BclI TGATCA 2 cut(s) 499, 526
BcoDI GTCTC 2 cut(s) 86, 469
BfaI CTAG 3 cut(s) 260, 558, 768
BfmI CTRYAG 1 cut(s) 691
BfuAI ACCTGC 1 cut(s) 744
BisI GCNGC 4 cut(s) 21, 24, 94, 97
BlsI GCNGC 4 cut(s) 22, 25, 95, 98
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 1 cut(s) 480
BoxI GACNNNNGTC 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 86
BsaWI WCCGGW 2 cut(s) 190, 484
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 36, 322
BseMII CTCAG 3 cut(s) 126, 187, 288
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 276
BshTI ACCGGT 1 cut(s) 484
BsiSI CCGG 2 cut(s) 191, 485
BsmAI GTCTC 2 cut(s) 86, 469
Bso31I GGTCTC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 592
Bsp143I GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
BspACI CCGC 7 cut(s) 18, 21, 24, 66, 91, 94, 255
BspCNI CTCAG 3 cut(s) 125, 186, 289
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 4 cut(s) 171, 473, 486, 536
BspT104I TTCGAA 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 2 cut(s) 26, 257
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 484
BssMI GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
Bst4CI ACNGT 3 cut(s) 382, 601, 818
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 7 cut(s) 112, 173, 184, 297, 438, 505, 534
BstF5I GGATG 2 cut(s) 36, 322
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 9 cut(s) 57, 179, 430, 460, 481, 502, 529, 544, 891
BstMAI GTCTC 2 cut(s) 86, 469
BstMBI GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
BstNSI RCATGY 1 cut(s) 274
BstPAI GACNNNNGTC 1 cut(s) 752
BstSFI CTRYAG 1 cut(s) 691
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 108
BstX2I RGATCY 2 cut(s) 176, 478
BstYI RGATCY 2 cut(s) 176, 478
BtsCI GGATG 2 cut(s) 36, 322
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 764
CseI GACGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 48, 243, 293
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 1 cut(s) 271
CviQI GTAC 3 cut(s) 48, 243, 293
DdeI CTNAG 7 cut(s) 112, 173, 184, 297, 438, 505, 534
DpnI GATC 9 cut(s) 56, 178, 429, 459, 480, 501, 528, 543, 890
DpnII GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
DraIII CACNNNGTG 1 cut(s) 508
EciI GGCGGA 3 cut(s) 7, 80, 81
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 764
Eco57I CTGAAG 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 588
FaeI CATG 1 cut(s) 274
FaiI YATR 3 cut(s) 272, 678, 800
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FatI CATG 1 cut(s) 270
FbaI TGATCA 2 cut(s) 499, 526
Fnu4HI GCNGC 4 cut(s) 21, 24, 94, 97
FokI GGATG 2 cut(s) 23, 329
Fsp4HI GCNGC 4 cut(s) 21, 24, 94, 97
FspBI CTAG 3 cut(s) 260, 558, 768
GlaI GCGC 1 cut(s) 275
GluI GCNGC 4 cut(s) 21, 24, 94, 97
HapII CCGG 2 cut(s) 191, 485
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 6 cut(s) 87, 462, 511, 578, 594, 644
HpaII CCGG 2 cut(s) 191, 485
HphI GGTGA 4 cut(s) 22, 361, 404, 833
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 7 cut(s) 86, 176, 432, 469, 713, 747, 893
Hpy188III TCNNGA 3 cut(s) 287, 524, 632
Hpy8I GTNNAC 1 cut(s) 620
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 3 cut(s) 382, 601, 818
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 7 cut(s) 112, 173, 184, 297, 438, 505, 534
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 2 cut(s) 499, 526
Kzo9I GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 63, 204, 309, 498, 749, 799, 864
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 3 cut(s) 260, 558, 768
MaeIII GTNAC 4 cut(s) 139, 357, 625, 821
MalI GATC 9 cut(s) 56, 178, 429, 459, 480, 501, 528, 543, 890
MbiI CCGCTC 2 cut(s) 26, 257
MboI GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
MboII GAAGA 7 cut(s) 6, 376, 379, 664, 848, 876, 898
MflI RGATCY 2 cut(s) 176, 478
MluCI AATT 2 cut(s) 588, 714
MlyI GAGTC 1 cut(s) 471
MmeI TCCRAC 4 cut(s) 650, 691, 742, 757
MnlI CCTC 6 cut(s) 43, 50, 230, 307, 463, 628
MseI TTAA 4 cut(s) 732, 791, 828, 846
MspI CCGG 2 cut(s) 191, 485
MvnI CGCG 1 cut(s) 276
NdeII GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 3 cut(s) 139, 625, 821
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 592
PfeI GAWTC 5 cut(s) 87, 511, 578, 594, 644
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 4 cut(s) 22, 25, 95, 98
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PshAI GACNNNNGTC 1 cut(s) 752
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 764
PsuI RGATCY 2 cut(s) 176, 478
RsaI GTAC 3 cut(s) 49, 244, 294
RsaNI GTAC 3 cut(s) 48, 243, 293
SaqAI TTAA 4 cut(s) 732, 791, 828, 846
SatI GCNGC 4 cut(s) 21, 24, 94, 97
Sau3AI GATC 9 cut(s) 54, 176, 427, 457, 478, 499, 526, 541, 888
Sau96I GGNCC 1 cut(s) 764
SchI GAGTC 1 cut(s) 471
SfcI CTRYAG 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 1 cut(s) 764
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 2 cut(s) 588, 714
SsiI CCGC 7 cut(s) 18, 21, 24, 66, 91, 94, 255
SspMI CTAG 3 cut(s) 260, 558, 768
TaaI ACNGT 3 cut(s) 382, 601, 818
TaqI TCGA 2 cut(s) 460, 592
TasI AATT 2 cut(s) 588, 714
TauI GCSGC 3 cut(s) 23, 26, 96
TfiI GAWTC 5 cut(s) 87, 511, 578, 594, 644
Tru1I TTAA 4 cut(s) 732, 791, 828, 846
Tru9I TTAA 4 cut(s) 732, 791, 828, 846
TseFI GTSAC 3 cut(s) 139, 625, 821
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 3 cut(s) 139, 625, 821
TspDTI ATGAA 1 cut(s) 693
TspGWI ACGGA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 1 cut(s) 588
XceI RCATGY 1 cut(s) 274
XspI CTAG 3 cut(s) 260, 558, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.