FvH4_4g23940

ribosome biogenesis GTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010219
Physical Location & Seq
Reverse (-)
26249453 .. 26253725
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23940.t1

Sequence Viewer

Length: 1440 bp
ATGCCGATTGCCTCCCTTTCAATCCTCCGCCACCGCTTCCTCACCGCCACCGTCACCGTCACTCTCCCCACCTTCAACAACCTCCTCCGCTGCTGCGCAACCTTCCGATGCGTCCCTGTCGCAGCAGCGAAGCAGCACCAGAACCCTAACGTCACCAGAAAATCGCAGCCGCCGGATAAGAAGCTCCTTAAGGCCAAGCAGACCTTCAAGGACTACTCCTCCCTCGCGCCGGTCCTCTCTCCTCAGGACAAGCCTCCTCTCTCGGAATCCCAGACCGTCGGCACCGTCGCCTCCGCTCAGGCCAACTTCATGCGCGTCATCGTCGATGCTCCTGGAAAGAAGAGCGCGGACGAAACGGCGTCGTGTTCTGGATTTCAGGTGGAGCTGCTCTGTGTAGTGAGGGCGCTGCTAAAGAAGATAAAGAGGAGAGTGTTAGTTGGGGACAAGGTGCTGGTGGGGTCCATTGACTGGGTGGACCGCCGTGGAATGATCGAGAATGTGTACCGGAGGAGCTCCGAGATTCTTGACCCGCCGGTGGCCAATGTGGACCATTTGCTAGTGCTTTTCTCTCTGGAGCAGCCTAAGCTTGACCCCTTCGCGCTCACTAGGTTTTTGATTGAGGCCGAGTCCACTGGAATTCCACTCACGCTTGCTCTCAACAAGTCTGAGCTGGTTGACGAAGAGACAAAGGGTACATGGAAGTCTAGGCTACATAAGTGGGGCTACAAGCCACTTTTTTGCAGTGTTGAATCTAAATCTGGACTCGACTCTCTTACTTTTATTTTGAGAGATCAAACAAGTGTAATTGTCGGTCCAAGTGGAGTTGGAAAATCTAGCCTGATCAATGCTTTGAGGAATAGCGACCATCATGCTTTTGATGCTGCAGAAGTGGATAATCGGCTTGATCAAATTGTAGGCAGCAAGTGGTTGGAGGATCAGCGTGTTGGACAGGTTTCAGTAAGAAGTGGTAAAGGGAAGCATACTACCCGCCATGTTTCCTTGCTTCCATTGTCTGGAGGAGGGTATCTTGCTGATACTCCTGGGTTCAGCCAACCTAGTTTAATGAAAGTAACTAAGCAATCTCTGGCACAAGCTTTCCCAGAAATACAGAGGATACTCAATGACAGTGAAGCTGCCAAATGTGCATTCAGTGACTGCTTGCATTTGGGTGAAAAAGGATGTGTTGTTGGGACTGACTGGGAAAGATACCCATACTATTTCCAACTTCTTGATGAGATCAGAATCAGAGAGGAATTTCAGTTAAGGACATTTGGAACCAAAAAAGAGGGTGATGTAAGGATCAAGGATGGACAAGCTGAACCAAGGTTGGAGCGTAAGAAGCACAGGAGAGTATCACGCAAGAGTATGAACCAGTCGGTACTAGATGAATTAGATGAGCTGGATGATGACGACAACTTACTAGATGAGGTAAAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
RsgA_GTPase

Protein Analysis

480

Amino Acids

53.51

Weight (kDa)

8.89

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 168 - 354 1e-46 RsgA GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 281
AccB7I CCANNNNNTGG 2 cut(s) 468, 1013
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 4 cut(s) 227, 315, 347, 599
AclWI GGATC 2 cut(s) 942, 1307
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 2 cut(s) 636, 1253
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 3 cut(s) 503, 694, 1380
AfiI CCNNNNNNNGG 4 cut(s) 229, 468, 535, 1013
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 4 cut(s) 21, 76, 208, 749
AjnI CCWGG 2 cut(s) 331, 1039
AjuI GAANNNNNNNTTGG 4 cut(s) 188, 220, 1130, 1162
AluBI AGCT 9 cut(s) 184, 385, 513, 586, 670, 1094, 1133, 1316, 1399
AluI AGCT 9 cut(s) 184, 385, 513, 586, 670, 1094, 1133, 1316, 1399
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 2 cut(s) 942, 1307
AlwNI CAGNNNCTG 1 cut(s) 1155
AoxI GGCC 4 cut(s) 192, 300, 537, 621
ApoI RAATTY 2 cut(s) 636, 1253
AspLEI GCGC 6 cut(s) 98, 229, 315, 347, 406, 601
AspS9I GGNCC 5 cut(s) 232, 459, 475, 547, 812
AsuHPI GGTGA 5 cut(s) 34, 46, 145, 1181, 1301
AvaII GGWCC 5 cut(s) 232, 459, 475, 547, 812
AxyI CCTNAGG 1 cut(s) 243
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 515
BccI CCATC 2 cut(s) 873, 1301
BceAI ACGGC 2 cut(s) 372, 465
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 2 cut(s) 333, 1041
BciVI GTATCC 1 cut(s) 1107
BclI TGATCA 2 cut(s) 840, 904
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 7 cut(s) 557, 606, 705, 834, 1056, 1382, 1421
BfmI CTRYAG 1 cut(s) 882
BfoI RGCGCY 1 cut(s) 407
BfrI CTTAAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 1107
Bme1390I CCNGG 2 cut(s) 333, 1041
Bme18I GGWCC 5 cut(s) 232, 459, 475, 547, 812
BmgT120I GGNCC 5 cut(s) 232, 459, 475, 547, 812
BmiI GGNNCC 3 cut(s) 283, 460, 1276
BmrFI CCNGG 2 cut(s) 333, 1041
BmrI ACTGGG 2 cut(s) 478, 1207
BmsI GCATC 3 cut(s) 98, 316, 868
BmuI ACTGGG 2 cut(s) 478, 1207
BpmI CTGGAG 2 cut(s) 593, 1035
Bpu10I CCTNAGC 2 cut(s) 297, 582
BsaBI GATNNNNATC 1 cut(s) 1241
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 481, 1040, 1322
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 468, 535, 1013
Bse118I RCCGGY 2 cut(s) 229, 532
Bse1I ACTGG 4 cut(s) 473, 637, 1202, 1372
Bse21I CCTNAGG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 1241
BseBI CCWGG 2 cut(s) 333, 1041
BseDI CCNNGG 3 cut(s) 481, 1040, 1322
BseGI GGATG 3 cut(s) 1184, 1312, 1408
BseJI GATNNNNATC 1 cut(s) 1241
BseLI CCNNNNNNNGG 4 cut(s) 229, 468, 535, 1013
BseMII CTCAG 3 cut(s) 257, 311, 657
BseNI ACTGG 4 cut(s) 473, 637, 1202, 1372
BseRI GAGGAG 7 cut(s) 74, 208, 231, 246, 439, 523, 1032
Bsh1236I CGCG 4 cut(s) 227, 315, 347, 599
BshFI GGCC 4 cut(s) 194, 302, 539, 623
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 4 cut(s) 173, 230, 505, 533
BslFI GGGAC 3 cut(s) 98, 455, 1204
BslI CCNNNNNNNGG 4 cut(s) 229, 468, 535, 1013
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 3 cut(s) 98, 455, 1204
BsmI GAATGC 1 cut(s) 1145
BsnI GGCC 4 cut(s) 194, 302, 539, 623
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
BspANI GGCC 4 cut(s) 194, 302, 539, 623
BspCNI CTCAG 3 cut(s) 256, 310, 658
BspFNI CGCG 4 cut(s) 227, 315, 347, 599
BspLI GGNNCC 3 cut(s) 283, 460, 1276
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 2 cut(s) 942, 1307
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 229, 532
BsrI ACTGG 4 cut(s) 473, 637, 1202, 1372
BssAI RCCGGY 2 cut(s) 229, 532
BssECI CCNNGG 3 cut(s) 481, 1040, 1322
BssMI GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 1322
Bst2UI CCWGG 2 cut(s) 333, 1041
Bst4CI ACNGT 5 cut(s) 52, 58, 277, 286, 1127
Bst6I CTCTTC 2 cut(s) 335, 675
BstACI GRCGYC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 651, 1160
BstDEI CTNAG 5 cut(s) 243, 297, 582, 666, 1074
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 3 cut(s) 1184, 1312, 1408
BstFNI CGCG 4 cut(s) 227, 315, 347, 599
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 6 cut(s) 98, 229, 315, 347, 406, 601
BstKTI GATC 7 cut(s) 492, 793, 843, 907, 937, 1239, 1302
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
BstMWI GCNNNNNNNGC 4 cut(s) 583, 878, 1142, 1339
BstNI CCWGG 2 cut(s) 333, 1041
BstSCI CCNGG 2 cut(s) 331, 1039
BstSFI CTRYAG 1 cut(s) 882
BstUI CGCG 4 cut(s) 227, 315, 347, 599
Bsu36I CCTNAGG 1 cut(s) 243
BsuI GTATCC 1 cut(s) 1107
BsuRI GGCC 4 cut(s) 194, 302, 539, 623
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 3 cut(s) 1184, 1312, 1408
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 4 cut(s) 630, 748, 1132, 1156
Cac8I GCNNGC 2 cut(s) 651, 1160
CaiI CAGNNNCTG 1 cut(s) 1155
CfoI GCGC 6 cut(s) 98, 229, 315, 347, 406, 601
Cfr10I RCCGGY 2 cut(s) 229, 532
Cfr13I GGNCC 5 cut(s) 232, 459, 475, 547, 812
CseI GACGC 3 cut(s) 100, 304, 348
Csp6I GTAC 3 cut(s) 502, 693, 1379
CviAII CATG 4 cut(s) 310, 696, 869, 992
CviQI GTAC 3 cut(s) 502, 693, 1379
DdeI CTNAG 5 cut(s) 243, 297, 582, 666, 1074
DpnI GATC 7 cut(s) 491, 792, 842, 906, 936, 1238, 1301
DpnII GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 335, 675
EarI CTCTTC 2 cut(s) 335, 675
EciI GGCGGA 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 1322
Eco24I GRGCYC 1 cut(s) 515
Eco47I GGWCC 5 cut(s) 232, 459, 475, 547, 812
Eco53kI GAGCTC 1 cut(s) 513
Eco81I CCTNAGG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 331, 1039
EcoT14I CCWWGG 1 cut(s) 1322
EcoT38I GRGCYC 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 1322
FaeI CATG 4 cut(s) 313, 699, 872, 995
FaiI YATR 8 cut(s) 311, 697, 714, 870, 981, 993, 1213, 1367
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 3 cut(s) 98, 455, 1204
FatI CATG 4 cut(s) 309, 695, 868, 991
FauI CCCGC 2 cut(s) 537, 995
FbaI TGATCA 2 cut(s) 840, 904
FokI GGATG 3 cut(s) 1191, 1319, 1415
FriOI GRGCYC 1 cut(s) 515
FspBI CTAG 7 cut(s) 557, 606, 705, 834, 1056, 1382, 1421
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 6 cut(s) 97, 228, 314, 346, 405, 600
GsuI CTGGAG 2 cut(s) 593, 1035
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 4 cut(s) 194, 302, 539, 623
HapII CCGG 4 cut(s) 173, 230, 505, 533
HgaI GACGC 3 cut(s) 100, 304, 348
HhaI GCGC 6 cut(s) 98, 229, 315, 347, 406, 601
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 4 cut(s) 313, 699, 872, 995
Hin6I GCGC 6 cut(s) 96, 227, 313, 345, 404, 599
HinP1I GCGC 6 cut(s) 96, 227, 313, 345, 404, 599
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 2 cut(s) 584, 1092
HinfI GANTC 7 cut(s) 266, 520, 626, 749, 762, 767, 1242
HpaII CCGG 4 cut(s) 173, 230, 505, 533
HphI GGTGA 5 cut(s) 34, 46, 145, 1181, 1301
Hpy166II GTNNAC 5 cut(s) 475, 502, 547, 630, 676
Hpy188I TCNGA 6 cut(s) 107, 265, 517, 667, 1241, 1247
Hpy188III TCNNGA 8 cut(s) 245, 369, 493, 524, 572, 759, 1014, 1229
Hpy8I GTNNAC 5 cut(s) 475, 502, 547, 630, 676
Hpy99I CGWCG 4 cut(s) 281, 290, 326, 364
HpyAV CCTTC 4 cut(s) 82, 112, 214, 604
HpyCH4III ACNGT 5 cut(s) 52, 58, 277, 286, 1127
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 741, 884, 1145, 1162
HpyF10VI GCNNNNNNNGC 4 cut(s) 583, 878, 1142, 1339
HpyF3I CTNAG 5 cut(s) 243, 297, 582, 666, 1074
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 4 cut(s) 313, 699, 872, 995
HspAI GCGC 6 cut(s) 96, 227, 313, 345, 404, 599
Ksp22I TGATCA 2 cut(s) 840, 904
Kzo9I GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 7 cut(s) 189, 334, 382, 510, 518, 574, 1330
LweI GCATC 3 cut(s) 98, 316, 868
MaeI CTAG 7 cut(s) 557, 606, 705, 834, 1056, 1382, 1421
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 5 cut(s) 52, 58, 151, 1069, 1151
MalI GATC 7 cut(s) 491, 792, 842, 906, 936, 1238, 1301
MbiI CCGCTC 1 cut(s) 296
MboI GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
MboII GAAGA 3 cut(s) 352, 427, 692
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 5 cut(s) 636, 804, 909, 1253, 1388
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 3 cut(s) 635, 756, 761
MmeI TCCRAC 5 cut(s) 805, 909, 925, 1246, 1308
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
MseI TTAA 3 cut(s) 189, 1061, 1262
MslI CAYNNNNRTG 1 cut(s) 1167
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 4 cut(s) 173, 230, 505, 533
MspR9I CCNGG 2 cut(s) 333, 1041
Mva1269I GAATGC 1 cut(s) 1145
MvaI CCWGG 2 cut(s) 333, 1041
MvnI CGCG 4 cut(s) 227, 315, 347, 599
MwoI GCNNNNNNNGC 4 cut(s) 583, 878, 1142, 1339
NdeII GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
NlaIII CATG 4 cut(s) 313, 699, 872, 995
NlaIV GGNNCC 3 cut(s) 283, 460, 1276
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 4 cut(s) 52, 58, 151, 1151
NsbI TGCGCA 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 335
PctI GAATGC 1 cut(s) 1145
PfeI GAWTC 4 cut(s) 266, 520, 749, 1242
PflMI CCANNNNNTGG 2 cut(s) 468, 1013
PfoI TCCNGGA 1 cut(s) 331
PleI GAGTC 3 cut(s) 634, 756, 761
PpsI GAGTC 3 cut(s) 634, 756, 761
Psp124BI GAGCTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 331, 1039
PspGI CCWGG 2 cut(s) 331, 1039
PspN4I GGNNCC 3 cut(s) 283, 460, 1276
PspPI GGNCC 5 cut(s) 232, 459, 475, 547, 812
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 1155
RsaI GTAC 3 cut(s) 503, 694, 1380
RsaNI GTAC 3 cut(s) 502, 693, 1379
RseI CAYNNNNRTG 1 cut(s) 1167
SacI GAGCTC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 189, 1061, 1262
Sau3AI GATC 7 cut(s) 489, 790, 840, 904, 934, 1236, 1299
Sau96I GGNCC 5 cut(s) 232, 459, 475, 547, 812
SchI GAGTC 3 cut(s) 635, 756, 761
ScrFI CCNGG 2 cut(s) 333, 1041
SduI GDGCHC 1 cut(s) 515
SfaNI GCATC 3 cut(s) 98, 316, 868
SfcI CTRYAG 1 cut(s) 882
SgrAI CRCCGGYG 1 cut(s) 532
SinI GGWCC 5 cut(s) 232, 459, 475, 547, 812
SmiMI CAYNNNNRTG 1 cut(s) 1167
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 636, 804, 909, 1253, 1388
SspMI CTAG 7 cut(s) 557, 606, 705, 834, 1056, 1382, 1421
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 2 cut(s) 331, 1039
StyI CCWWGG 1 cut(s) 1322
TaaI ACNGT 5 cut(s) 52, 58, 277, 286, 1127
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 324, 492, 765
TaqII GACCGA 1 cut(s) 800
TasI AATT 5 cut(s) 636, 804, 909, 1253, 1388
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 4 cut(s) 266, 520, 749, 1242
Tru1I TTAA 3 cut(s) 189, 1061, 1262
Tru9I TTAA 3 cut(s) 189, 1061, 1262
TscAI CASTG 4 cut(s) 637, 748, 1132, 1156
TseFI GTSAC 4 cut(s) 52, 58, 151, 1151
Tsp45I GTSAC 4 cut(s) 52, 58, 151, 1151
TspDTI ATGAA 4 cut(s) 298, 1079, 1382, 1401
TspRI CASTG 4 cut(s) 637, 748, 1132, 1156
Van91I CCANNNNNTGG 2 cut(s) 468, 1013
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 5 cut(s) 232, 459, 475, 547, 812
XapI RAATTY 2 cut(s) 636, 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XspI CTAG 7 cut(s) 557, 606, 705, 834, 1056, 1382, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.