Rh4CG324500

ribosome biogenesis GTPase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
58604117 .. 58607203
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG324500.1

Sequence Viewer

Length: 1437 bp
ATGCCGACTGCCTCCATCTCAATTCTCCGCCACCGCTCCGTCACCGTCACTCTCCCCACCTTCAACGACCTCTGCCGCCGATTCTCAACCGTCCGATGCGTCCCTATCGCAGCAGCAAAGCACCCTAACGTCACCAGAAAATCGCAGCCGCCGGACAAGAAGCTCCTCCGAGCTAAACAGACCTTCAAGGACTACTCCTCCCTCGCCCCGGTCCTCTCTCCTCAGGACAAGCCTCCTCTCTCGGAATCCCAGACCGTCGGCACCGTCGCCGCCGCTCAGGCCAACTTCATGCGCGTCATCGTCGAACCTCCTGGAAGCCTCGAGAAGAGCGCGGACGAAACGGCCTCGTCGTCGTCGTCTTCTGGATTTCAGGTGGAGCTGCTGTGTGTGGTGAGGGCGTTGTTGAAGAAGATAAAGAGGAGAGTGTTGGTTGGGGACAAGGTGCTGGTGGGGTCCATTGACTGGGTGGACCGCCGGGGAATGATCGAGAATGTGTACCGGAGGAGCTCCGAGATTCTTGACCCGCCGGTGGCCAATGTGGATCATCTGCTCGTGCTTTTCTCTCTGGAGCAGCCCAAGCTTGACCCCTTCGCGCTCACTAGGTTTCTGGTTGAGGCCGAGTCCACTGGAATTCCACTCACTCTGGCTCTCAACAAGTCTGAGCTGGTTGACGAAGAGACAAAGGCTACATGGAAGTCTAGGCTACATAAGTGGGGCTACAAGCCACTATTTTGCAGCGTTGAATCTAAATCTGGACTCGACTCTCTTGCTTTTATTTTGAGAGATCAAACAAGTGTAATTGTGGGTCCAAGTGGAGTTGGAAAGTCTAGTCTGATCAATGCTTTGAGGAATAGCGACCATCATGCTTTTGATGCTGCAGAAGTGGATAATCGGCTTGATCCAATTTCAGGCAGCAAGTGGTTGGAGGATCAGCGTGTTGGAGAGGTTTCAGTAAGAAGTGGTAAAGGGAAGCATACCACTCGCCACGTTTCCTTGCTTCCATTGTCTGGAGGAGGGTATCTTGCTGATACTCCTGGGTTCAGCCAGCCTAGTTTAATGAAAGTAACAAAGCAATCTCTGGCACAAGCTTTCCCCGAGATACAGAAGATACTCAATGACAGTGAAACTGCGAAATGCTCATTCAGTGACTGCTTGCATTTGGGTGAAAAAGGTTGCGTTGTAGGGACTGACTGGGAAAGATACCCGTACTATTTCCAACTTCTTGATGAGATCAGAATCAGAGAGGAATTTCAGTTAAGGACATTTGGAACCAAAAAAGAGGGTGATGTAAGGATCAAGGATGGACAAGCCGAACCAAGGTTGGAGCGTAAGAAGCATAGGAGAGTATCTCGCAAGAGTATGAACCAATCAGTACTAGATGAATTAGATGAGCTTGATGACGACGACGACGACTTACTAGATGAGGTGAACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

53.26

Weight (kDa)

8.33

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 166 - 352 1.7e-47 RsgA GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 462, 1007
AccBSI CCGCTC 2 cut(s) 36, 275
AccII CGCG 3 cut(s) 294, 332, 593
AciI CCGC 9 cut(s) 28, 34, 76, 149, 270, 273, 332, 472, 524
AclWI GGATC 4 cut(s) 549, 893, 936, 1301
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 2 cut(s) 630, 1247
AfaI GTAC 3 cut(s) 497, 1208, 1374
AfiI CCNNNNNNNGG 6 cut(s) 208, 462, 529, 908, 1007, 1317
AgsI TTSAA 4 cut(s) 64, 187, 406, 743
AjnI CCWGG 2 cut(s) 310, 1033
AluBI AGCT 8 cut(s) 163, 173, 379, 507, 580, 664, 1088, 1393
AluI AGCT 8 cut(s) 163, 173, 379, 507, 580, 664, 1088, 1393
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 4 cut(s) 549, 893, 936, 1301
AlwNI CAGNNNCTG 1 cut(s) 1149
Ama87I CYCGRG 2 cut(s) 320, 1094
AoxI GGCC 4 cut(s) 279, 342, 531, 615
ApeKI GCWGC 8 cut(s) 110, 113, 145, 379, 571, 735, 875, 912
ApoI RAATTY 2 cut(s) 630, 1247
AspLEI GCGC 3 cut(s) 294, 332, 595
AspS9I GGNCC 4 cut(s) 211, 453, 469, 806
AsuC2I CCSGG 2 cut(s) 209, 476
AsuHPI GGTGA 5 cut(s) 34, 124, 403, 1175, 1295
AvaI CYCGRG 2 cut(s) 320, 1094
AvaII GGWCC 4 cut(s) 211, 453, 469, 806
AxyI CCTNAGG 1 cut(s) 222
BalI TGGCCA 1 cut(s) 533
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 509
BbvI GCAGC 8 cut(s) 122, 125, 157, 366, 583, 747, 862, 924
BccI CCATC 3 cut(s) 23, 867, 1295
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 6 cut(s) 749, 783, 845, 879, 962, 996
BciT130I CCWGG 2 cut(s) 312, 1035
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 2 cut(s) 209, 476
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 6 cut(s) 600, 699, 828, 1050, 1376, 1418
BfmI CTRYAG 1 cut(s) 876
BglI GCCNNNNNGGC 1 cut(s) 278
BmcAI AGTACT 1 cut(s) 1374
Bme1390I CCNGG 4 cut(s) 209, 312, 476, 1035
Bme18I GGWCC 4 cut(s) 211, 453, 469, 806
BmeT110I CYCGRG 2 cut(s) 320, 1094
BmgT120I GGNCC 4 cut(s) 211, 453, 469, 806
BmiI GGNNCC 4 cut(s) 262, 454, 807, 1270
BmrFI CCNGG 4 cut(s) 209, 312, 476, 1035
BmrI ACTGGG 2 cut(s) 472, 1201
BmsI GCATC 2 cut(s) 86, 862
BmuI ACTGGG 2 cut(s) 472, 1201
BpiI GAAGAC 1 cut(s) 351
BplI GAGNNNNNCTC 2 cut(s) 1333, 1365
BpmI CTGGAG 2 cut(s) 587, 1029
Bpu10I CCTNAGC 1 cut(s) 276
BpuMI CCSGG 2 cut(s) 209, 476
BsaBI GATNNNNATC 1 cut(s) 1235
BsaJI CCNNGG 4 cut(s) 207, 475, 1034, 1316
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 368, 398
Bsc4I CCNNNNNNNGG 6 cut(s) 208, 462, 529, 908, 1007, 1317
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 3 cut(s) 467, 631, 1196
Bse21I CCTNAGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 1235
BseBI CCWGG 2 cut(s) 312, 1035
BseDI CCNNGG 4 cut(s) 207, 475, 1034, 1316
BseGI GGATG 1 cut(s) 1306
BseJI GATNNNNATC 1 cut(s) 1235
BseLI CCNNNNNNNGG 6 cut(s) 208, 462, 529, 908, 1007, 1317
BseMII CTCAG 3 cut(s) 236, 290, 651
BseNI ACTGG 3 cut(s) 467, 631, 1196
BseRI GAGGAG 7 cut(s) 155, 187, 210, 225, 433, 517, 1026
BseXI GCAGC 8 cut(s) 122, 125, 157, 366, 583, 747, 862, 924
Bsh1236I CGCG 3 cut(s) 294, 332, 593
BshFI GGCC 4 cut(s) 281, 344, 533, 617
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 509
BsiHKCI CYCGRG 2 cut(s) 320, 1094
BsiSI CCGG 5 cut(s) 152, 209, 475, 499, 527
BslFI GGGAC 3 cut(s) 86, 449, 1198
BslI CCNNNNNNNGG 6 cut(s) 208, 462, 529, 908, 1007, 1317
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 3 cut(s) 86, 449, 1198
BsnI GGCC 4 cut(s) 281, 344, 533, 617
BsoBI CYCGRG 2 cut(s) 320, 1094
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
BspACI CCGC 9 cut(s) 28, 34, 76, 149, 270, 273, 332, 472, 524
BspANI GGCC 4 cut(s) 281, 344, 533, 617
BspCNI CTCAG 3 cut(s) 235, 289, 652
BspFNI CGCG 3 cut(s) 294, 332, 593
BspLI GGNNCC 4 cut(s) 262, 454, 807, 1270
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 4 cut(s) 549, 893, 936, 1301
BspQI GCTCTTC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 260
BsrBI CCGCTC 2 cut(s) 36, 275
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 3 cut(s) 467, 631, 1196
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 4 cut(s) 207, 475, 1034, 1316
BssMI GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 1316
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 312, 1035
Bst4CI ACNGT 5 cut(s) 46, 91, 256, 265, 1121
Bst6I CTCTTC 2 cut(s) 320, 669
BstC8I GCNNGC 2 cut(s) 1046, 1154
BstDEI CTNAG 3 cut(s) 222, 276, 660
BstF5I GGATG 1 cut(s) 1306
BstFNI CGCG 3 cut(s) 294, 332, 593
BstHHI GCGC 3 cut(s) 294, 332, 595
BstKTI GATC 8 cut(s) 486, 544, 787, 837, 901, 931, 1233, 1296
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
BstMWI GCNNNNNNNGC 4 cut(s) 278, 577, 872, 1333
BstNI CCWGG 2 cut(s) 312, 1035
BstSCI CCNGG 4 cut(s) 207, 310, 474, 1033
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 3 cut(s) 294, 332, 593
BstV1I GCAGC 8 cut(s) 122, 125, 157, 366, 583, 747, 862, 924
BstV2I GAAGAC 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 4 cut(s) 281, 344, 533, 617
BtsCI GGATG 1 cut(s) 1306
BtsIMutI CAGTG 3 cut(s) 624, 1126, 1150
Cac8I GCNNGC 2 cut(s) 1046, 1154
CaiI CAGNNNCTG 1 cut(s) 1149
CfoI GCGC 3 cut(s) 294, 332, 595
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 211, 453, 469, 806
CseI GACGC 2 cut(s) 88, 283
Csp6I GTAC 3 cut(s) 496, 1207, 1373
CviAII CATG 3 cut(s) 289, 690, 863
CviQI GTAC 3 cut(s) 496, 1207, 1373
DdeI CTNAG 3 cut(s) 222, 276, 660
DpnI GATC 8 cut(s) 485, 543, 786, 836, 900, 930, 1232, 1295
DpnII GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 2 cut(s) 320, 669
EarI CTCTTC 2 cut(s) 320, 669
EciI GGCGGA 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 1316
Eco24I GRGCYC 1 cut(s) 509
Eco47I GGWCC 4 cut(s) 211, 453, 469, 806
Eco53kI GAGCTC 1 cut(s) 507
Eco81I CCTNAGG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 320, 1094
EcoICRI GAGCTC 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 310, 1033
EcoT14I CCWWGG 1 cut(s) 1316
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 1316
FaeI CATG 3 cut(s) 292, 693, 866
FaiI YATR 7 cut(s) 290, 691, 708, 864, 975, 1338, 1361
FaqI GGGAC 3 cut(s) 86, 449, 1198
FatI CATG 3 cut(s) 288, 689, 862
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 1 cut(s) 834
FokI GGATG 1 cut(s) 1313
FriOI GRGCYC 1 cut(s) 509
FspBI CTAG 6 cut(s) 600, 699, 828, 1050, 1376, 1418
GlaI GCGC 3 cut(s) 293, 331, 594
GsuI CTGGAG 2 cut(s) 587, 1029
HaeIII GGCC 4 cut(s) 281, 344, 533, 617
HapII CCGG 5 cut(s) 152, 209, 475, 499, 527
HgaI GACGC 2 cut(s) 88, 283
HhaI GCGC 3 cut(s) 294, 332, 595
Hin1II CATG 3 cut(s) 292, 693, 866
Hin6I GCGC 3 cut(s) 292, 330, 593
HinP1I GCGC 3 cut(s) 292, 330, 593
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 2 cut(s) 578, 1086
HinfI GANTC 8 cut(s) 81, 245, 514, 620, 743, 756, 761, 1236
HpaII CCGG 5 cut(s) 152, 209, 475, 499, 527
HphI GGTGA 5 cut(s) 34, 124, 403, 1175, 1295
Hpy166II GTNNAC 5 cut(s) 469, 496, 624, 670, 1429
Hpy188I TCNGA 8 cut(s) 95, 170, 244, 511, 661, 834, 1235, 1241
Hpy188III TCNNGA 9 cut(s) 224, 322, 363, 487, 518, 566, 753, 1008, 1223
Hpy8I GTNNAC 5 cut(s) 469, 496, 624, 670, 1429
Hpy99I CGWCG 9 cut(s) 260, 269, 305, 352, 355, 358, 1406, 1409, 1412
HpyAV CCTTC 3 cut(s) 70, 193, 598
HpyCH4III ACNGT 5 cut(s) 46, 91, 256, 265, 1121
HpyCH4IV ACGT 2 cut(s) 129, 987
HpyCH4V TGCA 3 cut(s) 735, 878, 1156
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 577, 872, 1333
HpyF3I CTNAG 3 cut(s) 222, 276, 660
HpySE526I ACGT 2 cut(s) 129, 987
Hsp92II CATG 3 cut(s) 292, 693, 866
HspAI GCGC 3 cut(s) 292, 330, 593
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 7 cut(s) 41, 168, 376, 504, 512, 568, 1324
Lsp1109I GCAGC 8 cut(s) 122, 125, 157, 366, 583, 747, 862, 924
LweI GCATC 2 cut(s) 86, 862
MaeI CTAG 6 cut(s) 600, 699, 828, 1050, 1376, 1418
MaeII ACGT 2 cut(s) 129, 987
MaeIII GTNAC 5 cut(s) 40, 46, 130, 1063, 1145
MalI GATC 8 cut(s) 485, 543, 786, 836, 900, 930, 1232, 1295
MbiI CCGCTC 2 cut(s) 36, 275
MboI GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
MboII GAAGA 6 cut(s) 337, 351, 418, 421, 686, 1117
MhlI GDGCHC 1 cut(s) 509
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 6 cut(s) 21, 630, 798, 903, 1247, 1382
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 3 cut(s) 629, 750, 755
MmeI TCCRAC 5 cut(s) 799, 903, 919, 1240, 1302
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 1055, 1256
MslI CAYNNNNRTG 1 cut(s) 1161
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 5 cut(s) 152, 209, 475, 499, 527
MspR9I CCNGG 4 cut(s) 209, 312, 476, 1035
MvaI CCWGG 2 cut(s) 312, 1035
MvnI CGCG 3 cut(s) 294, 332, 593
MwoI GCNNNNNNNGC 4 cut(s) 278, 577, 872, 1333
NciI CCSGG 2 cut(s) 209, 476
NdeII GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
NlaIII CATG 3 cut(s) 292, 693, 866
NlaIV GGNNCC 4 cut(s) 262, 454, 807, 1270
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 4 cut(s) 40, 46, 130, 1145
PaeR7I CTCGAG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 3 cut(s) 347, 353, 1407
PfeI GAWTC 5 cut(s) 81, 245, 514, 743, 1236
PflMI CCANNNNNTGG 2 cut(s) 462, 1007
PfoI TCCNGGA 1 cut(s) 310
PleI GAGTC 3 cut(s) 628, 750, 755
PpsI GAGTC 3 cut(s) 628, 750, 755
Psp124BI GAGCTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 310, 1033
PspGI CCWGG 2 cut(s) 310, 1033
PspN4I GGNNCC 4 cut(s) 262, 454, 807, 1270
PspPI GGNCC 4 cut(s) 211, 453, 469, 806
PstI CTGCAG 1 cut(s) 880
PstNI CAGNNNCTG 1 cut(s) 1149
RsaI GTAC 3 cut(s) 497, 1208, 1374
RsaNI GTAC 3 cut(s) 496, 1207, 1373
RseI CAYNNNNRTG 1 cut(s) 1161
SacI GAGCTC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 1055, 1256
Sau3AI GATC 8 cut(s) 483, 541, 784, 834, 898, 928, 1230, 1293
Sau96I GGNCC 4 cut(s) 211, 453, 469, 806
ScaI AGTACT 1 cut(s) 1374
SchI GAGTC 3 cut(s) 629, 750, 755
ScrFI CCNGG 4 cut(s) 209, 312, 476, 1035
SduI GDGCHC 1 cut(s) 509
SfaNI GCATC 2 cut(s) 86, 862
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 526
SinI GGWCC 4 cut(s) 211, 453, 469, 806
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 1161
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 6 cut(s) 21, 630, 798, 903, 1247, 1382
SsiI CCGC 9 cut(s) 28, 34, 76, 149, 270, 273, 332, 472, 524
SspMI CTAG 6 cut(s) 600, 699, 828, 1050, 1376, 1418
SstI GAGCTC 1 cut(s) 509
StyD4I CCNGG 4 cut(s) 207, 310, 474, 1033
StyI CCWWGG 1 cut(s) 1316
TaaI ACNGT 5 cut(s) 46, 91, 256, 265, 1121
TaiI ACGT 2 cut(s) 132, 990
TaqI TCGA 4 cut(s) 303, 321, 486, 759
TasI AATT 6 cut(s) 21, 630, 798, 903, 1247, 1382
TatI WGTACW 1 cut(s) 1372
TauI GCSGC 4 cut(s) 78, 151, 272, 275
TfiI GAWTC 5 cut(s) 81, 245, 514, 743, 1236
Tru1I TTAA 2 cut(s) 1055, 1256
Tru9I TTAA 2 cut(s) 1055, 1256
TscAI CASTG 3 cut(s) 631, 1126, 1150
TseFI GTSAC 4 cut(s) 40, 46, 130, 1145
TseI GCWGC 8 cut(s) 110, 113, 145, 379, 571, 735, 875, 912
Tsp45I GTSAC 4 cut(s) 40, 46, 130, 1145
TspDTI ATGAA 4 cut(s) 277, 1073, 1376, 1395
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 3 cut(s) 631, 1126, 1150
Van91I CCANNNNNTGG 2 cut(s) 462, 1007
VpaK11BI GGWCC 4 cut(s) 211, 453, 469, 806
XapI RAATTY 2 cut(s) 630, 1247
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 6 cut(s) 600, 699, 828, 1050, 1376, 1418
ZrmI AGTACT 1 cut(s) 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.