AT1G67590

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008358
Physical Location & Seq
Reverse (-)
25333058 .. 25335025
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67590.1

Sequence Viewer

Length: 1044 bp
ATGAGATCTAGTGTAGAAGATAACAAAGGATGGATAGGACCAGCGACACCGGAGATATCGAACGGTTTTGAGTTTCAGAAAGGTTCGAACCGGACACCAAACCATCACCGGTCTACTATGGGGAAGCCAGCGCCGTCAAAATGGGACGATGCTCAGAAATGGCTTTCTGGTGTAGGGTTTGCTCGTGGAGGTGGTGGAGGTGGTGACAAGAGTAGTCATCACTCAAGAAGTAATAAGCCGAGAAACTCGAACGCGGATGATCTTAGACTTATAGCTTCAGCTTCACAGAGAGAACGTGAAGGAGAAGATCAGTACGTTGAGTATGATGATGAAGAGATGGCGGCGGGAAGACCGGAGGTTGAGACGAAGAATGTTGATTGTGGTGAATCTGTTTGGAGGAAAGAAAGTAGTATTAATCCAACGGCTGTGATTAGATCCGTTTGTGTGAGAGATATGGGGACTGAGATGACTCCTATTGGTAGTCAAGAGCCTTCTAGAACAGCTACACCGGTGCGAGCTACTACACCGGTTGGGAGGAGTCCTGTGACTTCACCGGTGAGGGCTTCACAACGTGGTGAGGCGGTGGGGGTTGTGATGGAGACGGTGACGGAGGTTAGGAGGGTAGAGAGTAATAATAGTGAGAAGGTTAATGGTTTTGTGGAGAGTAAGAAGGCTATGAGTGCTATGGAAGCTCGAGCCATGGCTTGGGATGAAGCAGAACGTGCTAAATTCATGGCTAGGTATAAGAGAGAGGAAGTGAAGATACAAGCTTGGGAGAATCACGAGAAGAGAAAGGCTGAGATGGAGATGAAGAAAATGGAGGTGAAGGCGGAGAGGATGAAAGCAAGGGCAGAGGAGAAGTTGGCCAACAAGCTAGCTGCGACGAAAAGGATAGCGGAAGAGAGGAGGGCGAATGCGGAGGCTAAGTTAAACGAAAAGGCGGTGAAGACATCGGAGAAAGCTGATTATATAAGGAGGAGTGGTCACTTGCCTTCTTCTTTTTCTTTCTCCTTTAAGCTTCCCTCTCGTTGTTGGTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

347

Amino Acids

38.78

Weight (kDa)

9.36

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 228 - 332 1.6e-31 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 705
AccI GTMKAC 1 cut(s) 113
AccII CGCG 1 cut(s) 254
AciI CCGC 8 cut(s) 254, 341, 344, 581, 830, 896, 917, 941
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 1 cut(s) 728
AcuI CTGAAG 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 705
AgeI ACCGGT 4 cut(s) 108, 508, 526, 553
Alw26I GTCTC 2 cut(s) 356, 593
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 1 cut(s) 728
AseI ATTAAT 1 cut(s) 414
AsiGI ACCGGT 4 cut(s) 108, 508, 526, 553
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 9 cut(s) 98, 215, 395, 543, 568, 587, 616, 835, 955
AsuII TTCGAA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 874
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 866
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BauI CACGAG 2 cut(s) 183, 782
BbsI GAAGAC 2 cut(s) 355, 953
BbvI GCAGC 1 cut(s) 865
BccI CCATC 5 cut(s) 24, 111, 331, 589, 796
BceAI ACGGC 2 cut(s) 118, 438
BcoDI GTCTC 2 cut(s) 356, 593
BfaI CTAG 4 cut(s) 9, 495, 738, 875
BfoI RGCGCY 1 cut(s) 134
BglII AGATCT 1 cut(s) 5
BisI GCNGC 2 cut(s) 342, 879
BlsI GCNGC 2 cut(s) 343, 880
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 38
BmsI GCATC 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 878
BpiI GAAGAC 2 cut(s) 355, 953
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 7 cut(s) 49, 90, 108, 352, 508, 526, 553
BsaXI ACNNNNNCTCC 4 cut(s) 911, 941, 967, 997
Bsc4I CCNNNNNNNGG 1 cut(s) 705
Bse118I RCCGGY 4 cut(s) 108, 508, 526, 553
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 4 cut(s) 35, 262, 715, 843
BseLI CCNNNNNNNGG 1 cut(s) 705
BseMII CTCAG 3 cut(s) 167, 453, 789
BseRI GAGGAG 4 cut(s) 550, 869, 919, 991
BseXI GCAGC 1 cut(s) 865
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 1 cut(s) 866
BshTI ACCGGT 4 cut(s) 108, 508, 526, 553
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 7 cut(s) 50, 91, 109, 353, 509, 527, 554
BslFI GGGAC 2 cut(s) 158, 472
BslI CCNNNNNNNGG 1 cut(s) 705
BsmAI GTCTC 2 cut(s) 356, 593
BsmBI CGTCTC 2 cut(s) 356, 593
BsmFI GGGAC 2 cut(s) 158, 472
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 866
BsoBI CYCGRG 1 cut(s) 693
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 4 cut(s) 5, 259, 307, 434
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 8 cut(s) 254, 341, 344, 581, 830, 896, 917, 941
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 3 cut(s) 166, 454, 790
BspFNI CGCG 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 878
BspPI GGATC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 86
BsrFI RCCGGY 4 cut(s) 108, 508, 526, 553
BssAI RCCGGY 4 cut(s) 108, 508, 526, 553
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 4 cut(s) 5, 259, 307, 434
BssSI CACGAG 2 cut(s) 183, 782
BssT1I CCWWGG 1 cut(s) 699
Bst2BI CACGAG 2 cut(s) 183, 782
Bst4CI ACNGT 2 cut(s) 65, 604
Bst6I CTCTTC 3 cut(s) 327, 782, 894
BstAPI GCANNNNNTGC 1 cut(s) 722
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 129, 516, 876
BstDEI CTNAG 5 cut(s) 153, 263, 462, 798, 924
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 4 cut(s) 35, 262, 715, 843
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 4 cut(s) 8, 262, 310, 437
BstMAI GTCTC 2 cut(s) 356, 593
BstMBI GATC 4 cut(s) 5, 259, 307, 434
BstMWI GCNNNNNNNGC 3 cut(s) 680, 689, 722
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 2 cut(s) 355, 953
BstX2I RGATCY 2 cut(s) 5, 434
BstYI RGATCY 2 cut(s) 5, 434
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 4 cut(s) 35, 262, 715, 843
Cac8I GCNNGC 3 cut(s) 129, 516, 876
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 4 cut(s) 108, 508, 526, 553
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 313
CspAI ACCGGT 4 cut(s) 108, 508, 526, 553
CviAII CATG 2 cut(s) 700, 733
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 5 cut(s) 153, 263, 462, 798, 924
DpnI GATC 4 cut(s) 7, 261, 309, 436
DpnII GATC 4 cut(s) 5, 259, 307, 434
DraIII CACNNNGTG 1 cut(s) 572
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 3 cut(s) 327, 782, 894
EarI CTCTTC 3 cut(s) 327, 782, 894
EciI GGCGGA 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 699
Eco32I GATATC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 693
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 2 cut(s) 356, 593
FaeI CATG 2 cut(s) 703, 736
FaqI GGGAC 2 cut(s) 158, 472
FatI CATG 2 cut(s) 699, 732
FauI CCCGC 1 cut(s) 337
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 342, 879
FokI GGATG 4 cut(s) 42, 269, 722, 850
Fsp4HI GCNGC 2 cut(s) 342, 879
FspBI CTAG 4 cut(s) 9, 495, 738, 875
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 342, 879
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 866
HapII CCGG 7 cut(s) 50, 91, 109, 353, 509, 527, 554
HhaI GCGC 1 cut(s) 133
Hin1II CATG 2 cut(s) 703, 736
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 2 cut(s) 768, 1016
HinfI GANTC 4 cut(s) 386, 469, 538, 778
HpaII CCGG 7 cut(s) 50, 91, 109, 353, 509, 527, 554
HphI GGTGA 9 cut(s) 98, 215, 395, 543, 568, 587, 616, 835, 955
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 3 cut(s) 78, 156, 955
Hpy188III TCNNGA 4 cut(s) 225, 485, 495, 782
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 886
HpyAV CCTTC 6 cut(s) 293, 501, 637, 664, 820, 1002
HpyCH4III ACNGT 2 cut(s) 65, 604
HpyCH4IV ACGT 4 cut(s) 295, 315, 571, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 689, 722
HpyF3I CTNAG 5 cut(s) 153, 263, 462, 798, 924
HpySE526I ACGT 4 cut(s) 295, 315, 571, 721
Hsp92II CATG 2 cut(s) 703, 736
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 4 cut(s) 5, 259, 307, 434
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 1 cut(s) 139
MaeI CTAG 4 cut(s) 9, 495, 738, 875
MaeII ACGT 4 cut(s) 295, 315, 571, 721
MaeIII GTNAC 4 cut(s) 203, 544, 604, 983
MalI GATC 4 cut(s) 7, 261, 309, 436
MboI GATC 4 cut(s) 5, 259, 307, 434
MflI RGATCY 2 cut(s) 5, 434
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 1 cut(s) 728
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 2 cut(s) 463, 547
MmeI TCCRAC 1 cut(s) 443
Mox20I TGGCCA 1 cut(s) 866
MscI TGGCCA 1 cut(s) 866
MseI TTAA 4 cut(s) 414, 648, 929, 1014
Msp20I TGGCCA 1 cut(s) 866
MspI CCGG 7 cut(s) 50, 91, 109, 353, 509, 527, 554
Mva1269I GAATGC 1 cut(s) 919
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 680, 689, 722
NcoI CCATGG 1 cut(s) 699
NdeII GATC 4 cut(s) 5, 259, 307, 434
NheI GCTAGC 1 cut(s) 874
NlaIII CATG 2 cut(s) 703, 736
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 4 cut(s) 203, 544, 604, 983
NspV TTCGAA 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 693
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 386, 778
PflMI CCANNNNNTGG 1 cut(s) 705
PinAI ACCGGT 4 cut(s) 108, 508, 526, 553
PkrI GCNGC 2 cut(s) 343, 880
PleI GAGTC 2 cut(s) 463, 546
PpsI GAGTC 2 cut(s) 463, 546
PshBI ATTAAT 1 cut(s) 414
PspPI GGNCC 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 693
PsuI RGATCY 2 cut(s) 5, 434
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 4 cut(s) 414, 648, 929, 1014
SatI GCNGC 2 cut(s) 342, 879
Sau3AI GATC 4 cut(s) 5, 259, 307, 434
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 463, 547
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 86
SgrAI CRCCGGYG 2 cut(s) 508, 553
SinI GGWCC 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 223, 693
SmoI CTYRAG 2 cut(s) 223, 693
Sse9I AATT 1 cut(s) 728
SsiI CCGC 8 cut(s) 254, 341, 344, 581, 830, 896, 917, 941
SspMI CTAG 4 cut(s) 9, 495, 738, 875
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 2 cut(s) 65, 604
TaiI ACGT 4 cut(s) 298, 318, 574, 724
TaqI TCGA 4 cut(s) 59, 86, 248, 694
TasI AATT 1 cut(s) 728
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 386, 778
Tru1I TTAA 4 cut(s) 414, 648, 929, 1014
Tru9I TTAA 4 cut(s) 414, 648, 929, 1014
TseFI GTSAC 4 cut(s) 203, 544, 604, 983
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 4 cut(s) 203, 544, 604, 983
TspDTI ATGAA 5 cut(s) 345, 721, 726, 824, 854
TspGWI ACGGA 2 cut(s) 427, 623
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 1 cut(s) 728
XbaI TCTAGA 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 693
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 4 cut(s) 9, 495, 738, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.