Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008358

Physical Location & Seq

Genomic Coordinates Forward (+)

6366347 .. 6368081

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGATCCATAGAGGATAAGGAGATTTCTGGGGGTAGTGGTATAAATTTTGAGTTTCAGAAAGCAAATGGAGCTAGCAGGACACCCCATCACAGAACAGCTTTAGGCAAACCAACACCTTCCAAATGGGATGATGCACAAAAATGGCTGGTGGGATTGTCCAGAGGAGCAGAAAAAAACCAGTCCAAAACAAAACCCAGAAATTCCAATGCTGATGACTTGAGACTCATAGCTCCTGTGCCACAGAAGGAGCAGGACTATTCGGATGGAGAAGAAGAACATCACCAACAACAAGAAGAAAATGGCTTTCCTGGGTCAGCTATGGCGAATCAGTGCGATGTGGAGACGAAGAAAGTGGATTGTGATGATTCAGTGTGGAGAAGCAGCAACAAATCTATGGAGAACTCGACAGCGGCTATGAGATCTATATGTTTAAGGGACATGGGGACAGAAATGACCCCTATTGCAAGCCAGGAGCCTTCAAGAACTACCACCCCTATCCGGGCCACAACCCCGGTGGCGCGCAGCCCTATATCTTCGGGGTCATCCACGCCGGTGAGGCCATGTCAGCATGGGATGCAAGGCACTCATCAGGGGTATCAAACATCCACTGATGGGGGTAGAAGTAGTCATGATCAGGCCAGTTCTTGTGGGAGAGGGAGCGGCGCAGCGAAACGGTATGTAGAAGAATCGAATGCTTGCAGGAACATGGCTGAGAATCCGAGTTCAGATCAAGGTACAAAACTGAGTCCCTTGGAAACAAGGGCAATTGCTTGGGATGAAGCAGAACGTGCCAAATATATGGCAAGGTACAAGCGTGAAGAGGTGAGAATACAAGCCTGGGAAAATCATGAGAAGAGGAAAGCCGAGATGGAAATGCGAAAAATGGAGGTGAAAGCGGAGAGAATGAAAACTCGGGGTCAAGAAAAGTTAACGAATAAACTCGCAGCAACAAGAAGAATTGCCGAAGAAAAGAGGGCGAACGCTGAGGCCAAGCTCAATGAAAAGGCTTTGAGGACTTCAGAAAAGGCAGATTACATAAGGAGGACTGGTCACTTGCCCTCTACTTTCTCTTTCAAGCTGCCCTCTCTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

367

Amino Acids

40.92

Weight (kDa)

9.12

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67590 AT1G67590
fragaria_vesca	FvH4_4g24210 FvH4_4g24210 FvH4_4g24210
malus_domestica	MD13G1113300.v1.1 MD16G1112600.v1.1
prunus_persica	Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1
pyrus_communis	pycom13g09870 pycom16g09520
rosa_chinensis	RchiOBHm_Chr4g0431051
rosa_laevigata	RLG00000006929
rosa_multiflora	Rmu_sc0010203.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372670
rosa_rugosa	Rorug04G0247800 Rorug04G0247900
rosa_samantha	Rh4AG304500 Rh4BG311700 Rh4CG328000 Rh4DG308200
rosa_wichuraiana	Rw4G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	663
AccII	CGCG	1 cut(s)	523
AciI	CCGC	3 cut(s)	413, 663, 899
AcsI	RAATTY	2 cut(s)	46, 202
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	2 cut(s)	739, 812
AfiI	CCNNNNNNNGG	3 cut(s)	501, 502, 615
AgsI	TTSAA	2 cut(s)	483, 1078
AjnI	CCWGG	3 cut(s)	310, 471, 839
AleI	CACNNNNGTG	1 cut(s)	554
AluBI	AGCT	6 cut(s)	74, 101, 233, 320, 997, 1081
AluI	AGCT	6 cut(s)	74, 101, 233, 320, 997, 1081
Alw26I	GTCTC	2 cut(s)	217, 338
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	4 cut(s)	504, 560, 639, 990
ApeKI	GCWGC	5 cut(s)	384, 525, 668, 947, 1081
ApoI	RAATTY	2 cut(s)	46, 202
AspLEI	GCGC	3 cut(s)	523, 525, 668
AspS9I	GGNCC	1 cut(s)	504
AsuC2I	CCSGG	2 cut(s)	503, 515
AsuHPI	GGTGA	4 cut(s)	275, 568, 838, 904
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	5 cut(s)	396, 537, 680, 959, 1068
BccI	CCATC	4 cut(s)	96, 260, 608, 865
BciT130I	CCWGG	3 cut(s)	312, 473, 841
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	503, 515
BcoDI	GTCTC	2 cut(s)	217, 338
BfaI	CTAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	7 cut(s)	385, 414, 526, 664, 669, 948, 1082
BlsI	GCNGC	7 cut(s)	386, 415, 527, 665, 670, 949, 1083
Bme1390I	CCNGG	5 cut(s)	312, 473, 503, 515, 841
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	5 cut(s)	312, 473, 503, 515, 841
BmsI	GCATC	2 cut(s)	124, 567
BmtI	GCTAGC	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	503, 515
BsaJI	CCNNGG	4 cut(s)	311, 513, 753, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	1036, 1066
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 502, 615
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	181, 642, 1054
BseBI	CCWGG	3 cut(s)	312, 473, 841
BseDI	CCNNGG	4 cut(s)	311, 513, 753, 840
BseGI	GGATG	6 cut(s)	136, 271, 545, 582, 605, 784
BseLI	CCNNNNNNNGG	3 cut(s)	501, 502, 615
BseMII	CTCAG	3 cut(s)	705, 737, 978
BseNI	ACTGG	3 cut(s)	181, 642, 1054
BsePI	GCGCGC	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	5 cut(s)	396, 537, 680, 959, 1068
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	4 cut(s)	506, 562, 641, 992
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	3 cut(s)	502, 515, 554
BslFI	GGGAC	3 cut(s)	452, 460, 735
BslI	CCNNNNNNNGG	3 cut(s)	501, 502, 615
BsmAI	GTCTC	2 cut(s)	217, 338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	3 cut(s)	452, 460, 735
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	4 cut(s)	506, 562, 641, 992
BsoBI	CYCGRG	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	5, 422, 634, 730
BspACI	CCGC	3 cut(s)	413, 663, 899
BspANI	GGCC	4 cut(s)	506, 562, 641, 992
BspCNI	CTCAG	3 cut(s)	706, 738, 979
BspFNI	CGCG	1 cut(s)	523
BspHI	TCATGA	2 cut(s)	631, 850
BspLI	GGNNCC	1 cut(s)	477
BspOI	GCTAGC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	181, 642, 1054
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	4 cut(s)	311, 513, 753, 840
BssHII	GCGCGC	1 cut(s)	521
BssMI	GATC	4 cut(s)	5, 422, 634, 730
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	312, 473, 841
Bst4CI	ACNGT	1 cut(s)	678
Bst6I	CTCTTC	2 cut(s)	816, 851
BstAPI	GCANNNNNTGC	2 cut(s)	577, 791
BstC8I	GCNNGC	4 cut(s)	76, 469, 523, 700
BstDEI	CTNAG	3 cut(s)	714, 746, 987
BstF5I	GGATG	6 cut(s)	136, 271, 545, 582, 605, 784
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	3 cut(s)	523, 525, 668
BstKTI	GATC	4 cut(s)	8, 425, 637, 733
BstMAI	GTCTC	2 cut(s)	217, 338
BstMBI	GATC	4 cut(s)	5, 422, 634, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 559, 568, 577, 791
BstNI	CCWGG	3 cut(s)	312, 473, 841
BstSCI	CCNGG	5 cut(s)	310, 471, 501, 513, 839
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	5 cut(s)	396, 537, 680, 959, 1068
BstX2I	RGATCY	2 cut(s)	5, 422
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	2 cut(s)	5, 422
BsuRI	GGCC	4 cut(s)	506, 562, 641, 992
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	6 cut(s)	136, 271, 545, 582, 605, 784
BtsIMutI	CAGTG	3 cut(s)	338, 378, 609
Cac8I	GCNNGC	4 cut(s)	76, 469, 523, 700
CciI	TCATGA	2 cut(s)	631, 850
CfoI	GCGC	3 cut(s)	523, 525, 668
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	738, 811
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	6 cut(s)	442, 564, 572, 632, 709, 851
CviQI	GTAC	2 cut(s)	738, 811
DdeI	CTNAG	3 cut(s)	714, 746, 987
DpnI	GATC	4 cut(s)	7, 424, 636, 732
DpnII	GATC	4 cut(s)	5, 422, 634, 730
Eam1104I	CTCTTC	2 cut(s)	816, 851
EarI	CTCTTC	2 cut(s)	816, 851
Eco130I	CCWWGG	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	915
EcoRII	CCWGG	3 cut(s)	310, 471, 839
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	6 cut(s)	445, 567, 575, 635, 712, 854
FaqI	GGGAC	3 cut(s)	452, 460, 735
FatI	CATG	6 cut(s)	441, 563, 571, 631, 708, 850
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	7 cut(s)	385, 414, 526, 664, 669, 948, 1082
FokI	GGATG	6 cut(s)	143, 278, 532, 589, 592, 791
Fsp4HI	GCNGC	7 cut(s)	385, 414, 526, 664, 669, 948, 1082
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	3 cut(s)	522, 524, 667
GluI	GCNGC	7 cut(s)	385, 414, 526, 664, 669, 948, 1082
HaeIII	GGCC	4 cut(s)	506, 562, 641, 992
HapII	CCGG	3 cut(s)	502, 515, 554
HhaI	GCGC	3 cut(s)	523, 525, 668
Hin1II	CATG	6 cut(s)	445, 567, 575, 635, 712, 854
Hin6I	GCGC	3 cut(s)	521, 523, 666
HinP1I	GCGC	3 cut(s)	521, 523, 666
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	6 cut(s)	225, 328, 368, 689, 718, 748
HpaI	GTTAAC	1 cut(s)	933
HpaII	CCGG	3 cut(s)	502, 515, 554
HphI	GGTGA	4 cut(s)	275, 568, 838, 904
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	5 cut(s)	60, 265, 723, 730, 1024
Hpy188III	TCNNGA	5 cut(s)	162, 483, 632, 851, 923
Hpy8I	GTNNAC	1 cut(s)	933
HpyAV	CCTTC	3 cut(s)	129, 241, 489
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	4 cut(s)	137, 467, 580, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 559, 568, 577, 791
HpyF3I	CTNAG	3 cut(s)	714, 746, 987
HpySE526I	ACGT	1 cut(s)	790
Hsp92II	CATG	6 cut(s)	445, 567, 575, 635, 712, 854
HspAI	GCGC	3 cut(s)	521, 523, 666
Ksp22I	TGATCA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	933
Kzo9I	GATC	4 cut(s)	5, 422, 634, 730
LmnI	GCTCC	6 cut(s)	71, 167, 238, 250, 475, 660
Lsp1109I	GCAGC	5 cut(s)	396, 537, 680, 959, 1068
LweI	GCATC	2 cut(s)	124, 567
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	1 cut(s)	1052
MalI	GATC	4 cut(s)	7, 424, 636, 732
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	4 cut(s)	5, 422, 634, 730
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	2 cut(s)	5, 422
MluCI	AATT	4 cut(s)	46, 202, 768, 960
MlyI	GAGTC	2 cut(s)	219, 757
MseI	TTAA	2 cut(s)	434, 932
MslI	CAYNNNNRTG	2 cut(s)	142, 554
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	3 cut(s)	502, 515, 554
MspR9I	CCNGG	5 cut(s)	312, 473, 503, 515, 841
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	3 cut(s)	312, 473, 841
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	5 cut(s)	71, 559, 568, 577, 791
NciI	CCSGG	2 cut(s)	503, 515
NdeII	GATC	4 cut(s)	5, 422, 634, 730
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	6 cut(s)	445, 567, 575, 635, 712, 854
NlaIV	GGNNCC	1 cut(s)	477
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	1052
OliI	CACNNNNGTG	1 cut(s)	554
PagI	TCATGA	2 cut(s)	631, 850
PauI	GCGCGC	1 cut(s)	521
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	4 cut(s)	328, 368, 689, 718
PkrI	GCNGC	7 cut(s)	386, 415, 527, 665, 670, 949, 1083
PleI	GAGTC	2 cut(s)	219, 756
PpsI	GAGTC	2 cut(s)	219, 756
Psp6I	CCWGG	3 cut(s)	310, 471, 839
PspGI	CCWGG	3 cut(s)	310, 471, 839
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	5, 422
PteI	GCGCGC	1 cut(s)	521
RsaI	GTAC	2 cut(s)	739, 812
RsaNI	GTAC	2 cut(s)	738, 811
RseI	CAYNNNNRTG	2 cut(s)	142, 554
SaqAI	TTAA	2 cut(s)	434, 932
SatI	GCNGC	7 cut(s)	385, 414, 526, 664, 669, 948, 1082
Sau3AI	GATC	4 cut(s)	5, 422, 634, 730
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	2 cut(s)	219, 757
ScrFI	CCNGG	5 cut(s)	312, 473, 503, 515, 841
SfaNI	GCATC	2 cut(s)	124, 567
SgrAI	CRCCGGYG	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	142, 554
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	46, 202, 768, 960
SsiI	CCGC	3 cut(s)	413, 663, 899
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	5 cut(s)	310, 471, 501, 513, 839
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	1 cut(s)	678
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	2 cut(s)	407, 692
TasI	AATT	4 cut(s)	46, 202, 768, 960
TauI	GCSGC	2 cut(s)	416, 666
TfiI	GAWTC	4 cut(s)	328, 368, 689, 718
Tru1I	TTAA	2 cut(s)	434, 932
Tru9I	TTAA	2 cut(s)	434, 932
TscAI	CASTG	3 cut(s)	338, 378, 616
TseFI	GTSAC	1 cut(s)	1052
TseI	GCWGC	5 cut(s)	384, 525, 668, 947, 1081
Tsp45I	GTSAC	1 cut(s)	1052
TspDTI	ATGAA	3 cut(s)	795, 923, 1017
TspRI	CASTG	3 cut(s)	338, 378, 616
XapI	RAATTY	2 cut(s)	46, 202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.