Rh4DG308200

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008358
Physical Location & Seq
Reverse (-)
53019322 .. 53021286
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG308200.1

Sequence Viewer

Length: 1149 bp
ATGAGATCCATAGAGGATAAGGAGATTTCTGGAGGCAATGCTATAAGTTTTGAGTTTCACAGTAAACAGAATGGAGGAGGAGCTAACCGCACTAGTGGCAACACTACTTCTTCCCATCATCATAGAACAGCTTTGGGAAAGTTACCAACACCATCAAAATGGGATGATGCACAGAAATGGCTAGTGGGGTTGTCAAGAGGAGTAGACAAAACGCAGTCCAAGACCAAACCCAGAAACTCAAATGCAGATGACTTGAGGCTCATAGCTCCTGTGCCGCAGAAGGAGCAGGACTACTCGAGCGGAGACGAGGATGGAGAAGACGATAGACACGGAAAAGAAGCAAATGGGTGTTCTGGAACTGCAGTGGCAAATCATTACGATGTGGAGACGAAGAAAGTGGACTGTGATGACTCGGTTTGGAGGAGCAACAAGCCTATGGAGAACCCAACTTCAGCTGCTGCCATGAGATCCATATGTTTGAGGGACATGGGAACTGAGATGACCCCAATTGCAAGCCAAGAGCCTTCGAGAACCGGCACGCCTATCCGGGCCACAACTCCGGCTGCAAGGAGCCCGATATCTTCGGGATCCTCGACTCCGGTGAGGGCATGTCAGCATGGGATGCAAGCTAGCCAGCAGGGGTATCAAGGGTCTGGTGATAATGGTAGAAGTACTCATGAGGGCATTCCTTGTGGGAGAGGGAGTGGCGGAAGCAATAAAAGGTATGTGGAGGAATCAAATGTGTGCAAGAATAGTATGCCTGAGAATCAGAGTTCAGATCAAGCTAGGAAGCCAAATCCTCTAGAAACTAGAGCAATGGCTTGGGATGAGGCAGAACGCGCTAAATACATGGCAAGGTACAAGCGTGAAGAGGTAAAGATACAAGCCTGGGAAAACCATGAGAAGAGGAAAGCTGAGATGGAAATGAGAAAAATGGAGGTGAAGGCTGAAAGAATGAAATCTCGGGCACAAGAAAAGTTAACAAATAAACTTGCTGCAACGAGAAGAATAGCCGAAGAAAAGAGGGCTAATGCAGAGGCCAAACTCAATGAAAAAGCTTTGAAGACGTCGGAAAAGGCAGATTACATTAGGAGGACTGGTCATTTGCCCTCTTCTTTCTCTTGCAAGTTGCCTTCTCTTTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

382

Amino Acids

42.26

Weight (kDa)

9.18

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 269 - 371 3e-34 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 840
AciI CCGC 4 cut(s) 88, 275, 300, 708
AclWI GGATC 3 cut(s) 462, 582, 595
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 2 cut(s) 673, 860
AgsI TTSAA 1 cut(s) 1063
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 887
AluBI AGCT 8 cut(s) 83, 131, 266, 455, 629, 785, 914, 1058
AluI AGCT 8 cut(s) 83, 131, 266, 455, 629, 785, 914, 1058
Alw26I GTCTC 2 cut(s) 297, 380
AlwI GGATC 3 cut(s) 462, 582, 595
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 2 cut(s) 295, 963
AoxI GGCC 2 cut(s) 549, 1038
ApeKI GCWGC 4 cut(s) 455, 458, 563, 995
ArsI GACNNNNNNTTYG 2 cut(s) 1087, 1119
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 549
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 613, 668, 952
AsuNHI GCTAGC 1 cut(s) 629
AvaI CYCGRG 2 cut(s) 295, 963
BaeGI GKGCMC 1 cut(s) 970
BaeI ACNNNNGTAYC 2 cut(s) 850, 883
BamHI GGATCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 324, 1070
BbvI GCAGC 4 cut(s) 442, 445, 550, 982
BccI CCATC 4 cut(s) 123, 160, 305, 913
BciT130I CCWGG 1 cut(s) 889
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 297, 380
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 6 cut(s) 93, 182, 630, 786, 803, 810
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 5 cut(s) 275, 456, 459, 564, 996
BlsI GCNGC 5 cut(s) 276, 457, 460, 565, 997
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 548, 889
BmeT110I CYCGRG 2 cut(s) 295, 963
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 2 cut(s) 572, 589
BmrFI CCNGG 2 cut(s) 548, 889
BmsI GCATC 2 cut(s) 157, 612
BmtI GCTAGC 1 cut(s) 633
BpiI GAAGAC 2 cut(s) 324, 1070
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 1 cut(s) 888
BsaWI WCCGGW 1 cut(s) 598
BsaXI ACNNNNNCTCC 4 cut(s) 688, 718, 1084, 1114
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 1102
Bse3DI GCAATG 2 cut(s) 43, 822
BseBI CCWGG 1 cut(s) 889
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 4 cut(s) 169, 316, 627, 832
BseMI GCAATG 2 cut(s) 43, 822
BseMII CTCAG 3 cut(s) 486, 753, 906
BseNI ACTGG 1 cut(s) 1102
BseRI GAGGAG 4 cut(s) 90, 93, 213, 436
BseSI GKGCMC 1 cut(s) 970
BseXI GCAGC 4 cut(s) 442, 445, 550, 982
Bsh1236I CGCG 1 cut(s) 840
BshFI GGCC 2 cut(s) 551, 1040
BsiHKCI CYCGRG 2 cut(s) 295, 963
BsiSI CCGG 4 cut(s) 534, 547, 560, 599
BslFI GGGAC 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 297, 380
BsmBI CGTCTC 2 cut(s) 297, 380
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 2 cut(s) 551, 1040
BsoBI CYCGRG 2 cut(s) 295, 963
Bsp1286I GDGCHC 2 cut(s) 575, 970
Bsp143I GATC 4 cut(s) 5, 467, 587, 778
BspACI CCGC 4 cut(s) 88, 275, 300, 708
BspANI GGCC 2 cut(s) 551, 1040
BspCNI CTCAG 3 cut(s) 487, 754, 907
BspFNI CGCG 1 cut(s) 840
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 572, 589
BspMAI CTGCAG 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 633
BspPI GGATC 3 cut(s) 462, 582, 595
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 43, 822
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 1 cut(s) 1102
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 4 cut(s) 5, 467, 587, 778
BssNI GRCGYC 1 cut(s) 1067
Bst2UI CCWGG 1 cut(s) 889
Bst4CI ACNGT 2 cut(s) 62, 404
Bst6I CTCTTC 3 cut(s) 864, 899, 1117
BstACI GRCGYC 1 cut(s) 1067
BstAPI GCANNNNNTGC 1 cut(s) 622
BstC8I GCNNGC 5 cut(s) 514, 539, 627, 631, 635
BstDEI CTNAG 3 cut(s) 495, 762, 915
BstF5I GGATG 4 cut(s) 169, 316, 627, 832
BstFNI CGCG 1 cut(s) 840
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 4 cut(s) 8, 470, 590, 781
BstMAI GTCTC 2 cut(s) 297, 380
BstMBI GATC 4 cut(s) 5, 467, 587, 778
BstMWI GCNNNNNNNGC 4 cut(s) 96, 283, 622, 839
BstNI CCWGG 1 cut(s) 889
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 2 cut(s) 546, 887
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 970
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 4 cut(s) 442, 445, 550, 982
BstV2I GAAGAC 2 cut(s) 324, 1070
BstX2I RGATCY 3 cut(s) 5, 467, 587
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 3 cut(s) 5, 467, 587
BsuRI GGCC 2 cut(s) 551, 1040
BtsCI GGATG 4 cut(s) 169, 316, 627, 832
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 5 cut(s) 514, 539, 627, 631, 635
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 676
CfoI GCGC 1 cut(s) 842
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 672, 859
CviAII CATG 7 cut(s) 463, 487, 609, 617, 677, 850, 899
CviQI GTAC 2 cut(s) 672, 859
DdeI CTNAG 3 cut(s) 495, 762, 915
DpnI GATC 4 cut(s) 7, 469, 589, 780
DpnII GATC 4 cut(s) 5, 467, 587, 778
Eam1104I CTCTTC 3 cut(s) 864, 899, 1117
EarI CTCTTC 3 cut(s) 864, 899, 1117
EciI GGCGGA 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 2 cut(s) 295, 963
EcoRII CCWGG 1 cut(s) 887
EcoRV GATATC 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 575
Esp3I CGTCTC 2 cut(s) 297, 380
FaeI CATG 7 cut(s) 466, 490, 612, 620, 680, 853, 902
FaqI GGGAC 1 cut(s) 497
FatI CATG 7 cut(s) 462, 486, 608, 616, 676, 849, 898
FauNDI CATATG 1 cut(s) 473
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 275, 456, 459, 564, 996
FokI GGATG 4 cut(s) 176, 323, 634, 839
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 5 cut(s) 275, 456, 459, 564, 996
FspBI CTAG 6 cut(s) 93, 182, 630, 786, 803, 810
GlaI GCGC 1 cut(s) 841
GluI GCNGC 5 cut(s) 275, 456, 459, 564, 996
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 551, 1040
HapII CCGG 4 cut(s) 534, 547, 560, 599
HhaI GCGC 1 cut(s) 842
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 7 cut(s) 466, 490, 612, 620, 680, 853, 902
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HincII GTYRAC 1 cut(s) 981
HindII GTYRAC 1 cut(s) 981
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 4 cut(s) 410, 595, 734, 766
HpaI GTTAAC 1 cut(s) 981
HpaII CCGG 4 cut(s) 534, 547, 560, 599
HphI GGTGA 3 cut(s) 613, 668, 952
Hpy166II GTNNAC 4 cut(s) 65, 205, 400, 981
Hpy188I TCNGA 3 cut(s) 771, 778, 1072
Hpy188III TCNNGA 7 cut(s) 30, 195, 354, 528, 585, 677, 803
Hpy8I GTNNAC 4 cut(s) 65, 205, 400, 981
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 4 cut(s) 274, 534, 937, 1143
HpyCH4III ACNGT 2 cut(s) 62, 404
HpyCH4IV ACGT 1 cut(s) 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 283, 622, 839
HpyF3I CTNAG 3 cut(s) 495, 762, 915
HpySE526I ACGT 1 cut(s) 1067
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 7 cut(s) 466, 490, 612, 620, 680, 853, 902
HspAI GCGC 1 cut(s) 840
KspAI GTTAAC 1 cut(s) 981
Kzo9I GATC 4 cut(s) 5, 467, 587, 778
LmnI GCTCC 5 cut(s) 80, 271, 283, 423, 570
Lsp1109I GCAGC 4 cut(s) 442, 445, 550, 982
LweI GCATC 2 cut(s) 157, 612
MaeI CTAG 6 cut(s) 93, 182, 630, 786, 803, 810
MaeII ACGT 1 cut(s) 1067
MaeIII GTNAC 1 cut(s) 141
MalI GATC 4 cut(s) 7, 469, 589, 780
MbiI CCGCTC 1 cut(s) 300
MboI GATC 4 cut(s) 5, 467, 587, 778
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 3 cut(s) 5, 467, 587
MhlI GDGCHC 2 cut(s) 575, 970
MluCI AATT 1 cut(s) 507
MlyI GAGTC 2 cut(s) 404, 589
MmeI TCCRAC 1 cut(s) 1050
MseI TTAA 1 cut(s) 980
MslI CAYNNNNRTG 3 cut(s) 157, 175, 378
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 4 cut(s) 534, 547, 560, 599
MspR9I CCNGG 2 cut(s) 548, 889
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 889
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 4 cut(s) 96, 283, 622, 839
NciI CCSGG 1 cut(s) 548
NdeI CATATG 1 cut(s) 473
NdeII GATC 4 cut(s) 5, 467, 587, 778
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 7 cut(s) 466, 490, 612, 620, 680, 853, 902
NlaIV GGNNCC 2 cut(s) 572, 589
NspI RCATGY 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 295
PagI TCATGA 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 734, 766
PkrI GCNGC 5 cut(s) 276, 457, 460, 565, 997
PleI GAGTC 2 cut(s) 404, 589
PpsI GAGTC 2 cut(s) 404, 589
Psp6I CCWGG 1 cut(s) 887
PspGI CCWGG 1 cut(s) 887
PspN4I GGNNCC 2 cut(s) 572, 589
PspPI GGNCC 1 cut(s) 549
PspXI VCTCGAGB 1 cut(s) 295
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 3 cut(s) 5, 467, 587
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 673, 860
RsaNI GTAC 2 cut(s) 672, 859
RseI CAYNNNNRTG 3 cut(s) 157, 175, 378
SaqAI TTAA 1 cut(s) 980
SatI GCNGC 5 cut(s) 275, 456, 459, 564, 996
Sau3AI GATC 4 cut(s) 5, 467, 587, 778
Sau96I GGNCC 1 cut(s) 549
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 2 cut(s) 404, 589
ScrFI CCNGG 2 cut(s) 548, 889
SduI GDGCHC 2 cut(s) 575, 970
SfaNI GCATC 2 cut(s) 157, 612
SfcI CTRYAG 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 3 cut(s) 157, 175, 378
SmlI CTYRAG 2 cut(s) 253, 295
SmoI CTYRAG 2 cut(s) 253, 295
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 1 cut(s) 507
SsiI CCGC 4 cut(s) 88, 275, 300, 708
SspMI CTAG 6 cut(s) 93, 182, 630, 786, 803, 810
StyD4I CCNGG 2 cut(s) 546, 887
TaaI ACNGT 2 cut(s) 62, 404
TaiI ACGT 1 cut(s) 1070
TaqI TCGA 3 cut(s) 296, 527, 593
TasI AATT 1 cut(s) 507
TatI WGTACW 1 cut(s) 671
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 2 cut(s) 734, 766
Tru1I TTAA 1 cut(s) 980
Tru9I TTAA 1 cut(s) 980
TscAI CASTG 1 cut(s) 369
TseI GCWGC 4 cut(s) 455, 458, 563, 995
TspDTI ATGAA 2 cut(s) 971, 1065
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 1 cut(s) 612
XhoI CTCGAG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 6 cut(s) 93, 182, 630, 786, 803, 810
ZraI GACGTC 1 cut(s) 1068
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.