MD16G1112600.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0008358
Physical Location & Seq
Forward (+)
7880688 .. 7883101
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1112600.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGAGATCCATAGAAGATAAGGAGATTTCTGGGGGTAGTGGTATAAATTTTGAGTTTCAGAAAGCAAATGGAGCTAGCAGGACACCCCATCACAGAACAGCTTTAGGCAAACCAACACCTTCCAAATGGGATGATGCACAAAAATGGCTGGTGGGATTGTCCAGAGTAGCAGAAAAAAACCAGTCCAAAACAAAACCCAGAAATTCAAATGCTGATGACTTGAGACTCATAGCTCCTGTGCCACAGAAGGAGCAGGACTATTCAGATGGAGAAGAAGAACATCACCAACAAGAAGAAGAAAATGGCTTTCCTGGGTCAGCTATGGCGAATCAGTACGATGTGGAGACGAAGAAAGTGGATTGTGATGATTCAGTGTGGAGAAGCAGCAAAAAATCTATGGAGAACTCGACAGCGGCTACGAGATCTATATGTTTGAGGGACATGGGGACAGAAATGACCCCTATTGCAAGCCAGGAGCCTTCAAGAACTACCACCCCTATCCGGGCCACAACCCCGGTGGCGCGCAGCCCTATATCTTCGGGGTCATCCACGCCGGTGAGGCCATGTCAGCATGGGATGCAAGGCACTCATCAGGGGTATCAAACATCCACTGATGGGGGGAGAAGTAGTCATGATCAGGCCAGTTCTTGTGGGAGAGGGAGCGGCACAGCGAAACGGTATGTAGAAGAATCAAATGCTTGCAGGGACATGGCTGAGAATCCGAGTTCAGATCAAGGTACAAAACCGAGTCCCTTGGAAACAAGGGCAATGGCTTGGGATGAAGCAGAACGTGCCAAATATATGGCAAGGTACAAGCGTGAAGAGGTGAGAATACAAGCCTGGGAAAATCATGAGAAGAGGAAAGCCGAGATGGAAATGCGAAAAATGGAGGTGAAAGCGGAGAGAATGAAAACTCGGGGTCAAGAAAAGTTAACGAATAAACTCGCAGCAACAAGAAGAATAGCCGAAGAAAAGAGGGCGAACGCTGAGGCCAAACTCAACGAAAAGGCTTTGAGGACTTCAGAAAAGGCAGATTACATAAGGAGGACTGGTCACTTGCCCTCTACTTTCTCTTTCAAGCTGCCTTCTCTTTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

367

Amino Acids

41.04

Weight (kDa)

9.07

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 253 - 355 3.1e-33 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 663
AccII CGCG 1 cut(s) 523
AciI CCGC 3 cut(s) 413, 663, 899
AcsI RAATTY 2 cut(s) 46, 202
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 3 cut(s) 335, 739, 812
AfiI CCNNNNNNNGG 3 cut(s) 501, 502, 615
AgsI TTSAA 3 cut(s) 207, 483, 1078
AjnI CCWGG 3 cut(s) 310, 471, 839
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 5 cut(s) 74, 101, 233, 320, 1081
AluI AGCT 5 cut(s) 74, 101, 233, 320, 1081
Alw26I GTCTC 2 cut(s) 217, 338
Ama87I CYCGRG 1 cut(s) 915
AoxI GGCC 4 cut(s) 504, 560, 639, 990
ApeKI GCWGC 4 cut(s) 384, 525, 947, 1081
ApoI RAATTY 2 cut(s) 46, 202
AspLEI GCGC 2 cut(s) 523, 525
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 2 cut(s) 503, 515
AsuHPI GGTGA 4 cut(s) 275, 568, 838, 904
AsuNHI GCTAGC 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 915
BaeI ACNNNNGTAYC 2 cut(s) 802, 835
BbvCI CCTCAGC 1 cut(s) 987
BbvI GCAGC 4 cut(s) 396, 537, 959, 1068
BccI CCATC 4 cut(s) 96, 260, 608, 865
BciT130I CCWGG 3 cut(s) 312, 473, 841
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 2 cut(s) 503, 515
BcoDI GTCTC 2 cut(s) 217, 338
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 422
BisI GCNGC 6 cut(s) 385, 414, 526, 664, 948, 1082
BlsI GCNGC 6 cut(s) 386, 415, 527, 665, 949, 1083
Bme1390I CCNGG 5 cut(s) 312, 473, 503, 515, 841
BmeT110I CYCGRG 1 cut(s) 915
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 5 cut(s) 312, 473, 503, 515, 841
BmsI GCATC 2 cut(s) 124, 567
BmtI GCTAGC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 503, 515
BsaJI CCNNGG 4 cut(s) 311, 513, 753, 840
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 1036, 1066
Bsc4I CCNNNNNNNGG 3 cut(s) 501, 502, 615
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 3 cut(s) 181, 642, 1054
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 3 cut(s) 312, 473, 841
BseDI CCNNGG 4 cut(s) 311, 513, 753, 840
BseGI GGATG 5 cut(s) 136, 545, 582, 605, 784
BseLI CCNNNNNNNGG 3 cut(s) 501, 502, 615
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 705, 978
BseNI ACTGG 3 cut(s) 181, 642, 1054
BsePI GCGCGC 1 cut(s) 521
BseXI GCAGC 4 cut(s) 396, 537, 959, 1068
Bsh1236I CGCG 1 cut(s) 523
BshFI GGCC 4 cut(s) 506, 562, 641, 992
BsiHKCI CYCGRG 1 cut(s) 915
BsiSI CCGG 3 cut(s) 502, 515, 554
BslFI GGGAC 4 cut(s) 452, 460, 719, 735
BslI CCNNNNNNNGG 3 cut(s) 501, 502, 615
BsmAI GTCTC 2 cut(s) 217, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 4 cut(s) 452, 460, 719, 735
BsnI GGCC 4 cut(s) 506, 562, 641, 992
BsoBI CYCGRG 1 cut(s) 915
Bsp143I GATC 4 cut(s) 5, 422, 634, 730
BspACI CCGC 3 cut(s) 413, 663, 899
BspANI GGCC 4 cut(s) 506, 562, 641, 992
BspCNI CTCAG 2 cut(s) 706, 979
BspFNI CGCG 1 cut(s) 523
BspHI TCATGA 2 cut(s) 631, 850
BspLI GGNNCC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 663
BsrDI GCAATG 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 3 cut(s) 181, 642, 1054
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 4 cut(s) 311, 513, 753, 840
BssHII GCGCGC 1 cut(s) 521
BssMI GATC 4 cut(s) 5, 422, 634, 730
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 3 cut(s) 312, 473, 841
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 2 cut(s) 816, 851
BstAPI GCANNNNNTGC 2 cut(s) 577, 791
BstC8I GCNNGC 4 cut(s) 76, 469, 523, 700
BstDEI CTNAG 2 cut(s) 714, 987
BstF5I GGATG 5 cut(s) 136, 545, 582, 605, 784
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 2 cut(s) 523, 525
BstKTI GATC 4 cut(s) 8, 425, 637, 733
BstMAI GTCTC 2 cut(s) 217, 338
BstMBI GATC 4 cut(s) 5, 422, 634, 730
BstMWI GCNNNNNNNGC 5 cut(s) 71, 559, 568, 577, 791
BstNI CCWGG 3 cut(s) 312, 473, 841
BstSCI CCNGG 5 cut(s) 310, 471, 501, 513, 839
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 4 cut(s) 396, 537, 959, 1068
BstX2I RGATCY 2 cut(s) 5, 422
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 2 cut(s) 5, 422
BsuRI GGCC 4 cut(s) 506, 562, 641, 992
BtsCI GGATG 5 cut(s) 136, 545, 582, 605, 784
BtsIMutI CAGTG 2 cut(s) 378, 609
Cac8I GCNNGC 4 cut(s) 76, 469, 523, 700
CciI TCATGA 2 cut(s) 631, 850
CfoI GCGC 2 cut(s) 523, 525
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 504
Csp6I GTAC 3 cut(s) 334, 738, 811
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 6 cut(s) 442, 564, 572, 632, 709, 851
CviQI GTAC 3 cut(s) 334, 738, 811
DdeI CTNAG 2 cut(s) 714, 987
DpnI GATC 4 cut(s) 7, 424, 636, 732
DpnII GATC 4 cut(s) 5, 422, 634, 730
Eam1104I CTCTTC 2 cut(s) 816, 851
EarI CTCTTC 2 cut(s) 816, 851
Eco130I CCWWGG 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 915
EcoRII CCWGG 3 cut(s) 310, 471, 839
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 6 cut(s) 445, 567, 575, 635, 712, 854
FaqI GGGAC 4 cut(s) 452, 460, 719, 735
FatI CATG 6 cut(s) 441, 563, 571, 631, 708, 850
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 6 cut(s) 385, 414, 526, 664, 948, 1082
FokI GGATG 5 cut(s) 143, 532, 589, 592, 791
Fsp4HI GCNGC 6 cut(s) 385, 414, 526, 664, 948, 1082
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 522, 524
GluI GCNGC 6 cut(s) 385, 414, 526, 664, 948, 1082
HaeIII GGCC 4 cut(s) 506, 562, 641, 992
HapII CCGG 3 cut(s) 502, 515, 554
HhaI GCGC 2 cut(s) 523, 525
Hin1II CATG 6 cut(s) 445, 567, 575, 635, 712, 854
Hin6I GCGC 2 cut(s) 521, 523
HinP1I GCGC 2 cut(s) 521, 523
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 6 cut(s) 225, 328, 368, 689, 718, 748
HpaI GTTAAC 1 cut(s) 933
HpaII CCGG 3 cut(s) 502, 515, 554
HphI GGTGA 4 cut(s) 275, 568, 838, 904
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 5 cut(s) 60, 265, 723, 730, 1024
Hpy188III TCNNGA 5 cut(s) 162, 483, 632, 851, 923
Hpy8I GTNNAC 1 cut(s) 933
HpyAV CCTTC 4 cut(s) 129, 241, 489, 1095
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 4 cut(s) 137, 467, 580, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 559, 568, 577, 791
HpyF3I CTNAG 2 cut(s) 714, 987
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 6 cut(s) 445, 567, 575, 635, 712, 854
HspAI GCGC 2 cut(s) 521, 523
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 933
Kzo9I GATC 4 cut(s) 5, 422, 634, 730
LmnI GCTCC 5 cut(s) 71, 238, 250, 475, 660
Lsp1109I GCAGC 4 cut(s) 396, 537, 959, 1068
LweI GCATC 2 cut(s) 124, 567
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 1 cut(s) 1052
MalI GATC 4 cut(s) 7, 424, 636, 732
MbiI CCGCTC 1 cut(s) 663
MboI GATC 4 cut(s) 5, 422, 634, 730
MflI RGATCY 2 cut(s) 5, 422
MluCI AATT 2 cut(s) 46, 202
MlyI GAGTC 2 cut(s) 219, 757
MseI TTAA 1 cut(s) 932
MslI CAYNNNNRTG 2 cut(s) 142, 554
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 502, 515, 554
MspR9I CCNGG 5 cut(s) 312, 473, 503, 515, 841
MvaI CCWGG 3 cut(s) 312, 473, 841
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 5 cut(s) 71, 559, 568, 577, 791
NciI CCSGG 2 cut(s) 503, 515
NdeII GATC 4 cut(s) 5, 422, 634, 730
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 6 cut(s) 445, 567, 575, 635, 712, 854
NlaIV GGNNCC 1 cut(s) 477
NmeAIII GCCGAG 1 cut(s) 892
NmuCI GTSAC 1 cut(s) 1052
OliI CACNNNNGTG 1 cut(s) 554
PagI TCATGA 2 cut(s) 631, 850
PauI GCGCGC 1 cut(s) 521
PfeI GAWTC 4 cut(s) 328, 368, 689, 718
PkrI GCNGC 6 cut(s) 386, 415, 527, 665, 949, 1083
PleI GAGTC 2 cut(s) 219, 756
PpsI GAGTC 2 cut(s) 219, 756
Psp6I CCWGG 3 cut(s) 310, 471, 839
PspGI CCWGG 3 cut(s) 310, 471, 839
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 504
PsuI RGATCY 2 cut(s) 5, 422
PteI GCGCGC 1 cut(s) 521
RsaI GTAC 3 cut(s) 335, 739, 812
RsaNI GTAC 3 cut(s) 334, 738, 811
RseI CAYNNNNRTG 2 cut(s) 142, 554
SaqAI TTAA 1 cut(s) 932
SatI GCNGC 6 cut(s) 385, 414, 526, 664, 948, 1082
Sau3AI GATC 4 cut(s) 5, 422, 634, 730
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 2 cut(s) 219, 757
ScrFI CCNGG 5 cut(s) 312, 473, 503, 515, 841
SfaNI GCATC 2 cut(s) 124, 567
SgrAI CRCCGGYG 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 142, 554
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 46, 202
SsiI CCGC 3 cut(s) 413, 663, 899
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 5 cut(s) 310, 471, 501, 513, 839
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 793
TaqI TCGA 1 cut(s) 407
TasI AATT 2 cut(s) 46, 202
TauI GCSGC 2 cut(s) 416, 666
TfiI GAWTC 4 cut(s) 328, 368, 689, 718
Tru1I TTAA 1 cut(s) 932
Tru9I TTAA 1 cut(s) 932
TscAI CASTG 2 cut(s) 378, 616
TseFI GTSAC 1 cut(s) 1052
TseI GCWGC 4 cut(s) 384, 525, 947, 1081
Tsp45I GTSAC 1 cut(s) 1052
TspDTI ATGAA 2 cut(s) 795, 923
TspRI CASTG 2 cut(s) 378, 616
XapI RAATTY 2 cut(s) 46, 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.