Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008358

Physical Location & Seq

Genomic Coordinates Reverse (-)

26462655 .. 26465974

Gene Structure 3320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGATCCATGGAAGATAAGGAGATTTCTGGAGGCAGTAATGCTATAAGTTTTGAGTTTCACAAACAGAATGGAGGAGCTAACCGCACTACCAGTACTACTACTACTGCTTCCCATCATCATAGAACAGCTTTGGGGAAGTTACCAACACCTTCAAAATGGGATGATGCACAGAAATGGCTAGTGGGGTTGTCGAGAGGAGTAGACAAAACGCATTCCAAGACCAAACCCAGAAACTCTAATGCTGATGACTTGAGGCTCATAGCTCCTGTGCCGCAGAAGGAGCAAGACTACTCTAGCGGAGAAGATGAAGGAGAAGCAAATGGGCGTTGTTCTGGTTCTGCTGTTGCAAATCATTACGATGTGGAGACGAAGAAAGTGGACTGTGATGACTCGGTTTGGAGAAGCAACAAGCCTATGATGGAGAACCCAACTTCAGCTGCTGCCATGAGATCTATATGTTTGAGGGACATGGGAACTGAAATGACCCCAATTGCAAGCCAAGAGCCTTCTAGAACCGGCACGCCTCTCCGGGCAACAACTCCGGCTGCAAGGAGCCCGATATCGTCGGGATCCTCGACTCCGGTGAGGGCATGTCAGCATGGGATGCAAGGTAACCAGCAGGGGTATCAAGGGTCTAGTGAGAATGGTAGAAGTAGTAGTACTACTCATGAGAGCATTCCTTGTGGGAGAGGGAGTGGCGGAAGCAATAAGAGGTATGTGGAGGAATCAAATGTGTGCAAGAATAGTATCCCTGAGAATCAGAACTCAGATCAAGCTAGGAAGCCAAATCCTCTAGAAACTAGAGCAATGGCTTGGGATGAAGCAGAAAGAGCAAAATACATGGCAAGGTACAAGCGTGAAGAAGTAAAGATACAAGCCTGGGAAAACCATGAGAAGAGAAAAGCTGAGATGGAAATGAGAAAAATGGAGGTGAAGGCTGAGAGAATGAAAGCTCGAGCACAAGAAAAGTTAACAAATAAACTTGCTGCAACGAGAAGGATAGCTGAAGAAAAGAGGGCTAATGCAGAAGCCAAACTCAATGAAAAAGCTTTGAAGACGTCGGAAAAGGCAGATTACATAAGGAGGACGGGTCATTTGCCATCTTCATTCTCTTGCAAATTGCCTTCACTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

381

Amino Acids

42.15

Weight (kDa)

9.32

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	267 - 376	1.4e-31	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67590 AT1G67590
fragaria_vesca	FvH4_4g24210 FvH4_4g24210 FvH4_4g24210
malus_domestica	MD13G1113300.v1.1 MD16G1112600.v1.1
prunus_persica	Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1
pyrus_communis	pycom13g09870 pycom16g09520
rosa_chinensis	RchiOBHm_Chr4g0431051
rosa_laevigata	RLG00000006929
rosa_multiflora	Rmu_sc0010203.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372670
rosa_rugosa	Rorug04G0247800 Rorug04G0247900
rosa_samantha	Rh4AG304500 Rh4BG311700 Rh4CG328000 Rh4DG308200
rosa_wichuraiana	Rw4G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	4 cut(s)	85, 275, 300, 702
AclWI	GGATC	2 cut(s)	567, 580
AcuI	CTGAAG	2 cut(s)	420, 1029
AcyI	GRCGYC	1 cut(s)	1061
AfaI	GTAC	3 cut(s)	97, 664, 854
AgsI	TTSAA	2 cut(s)	156, 1057
AjnI	CCWGG	1 cut(s)	881
AluBI	AGCT	9 cut(s)	80, 131, 266, 440, 779, 908, 956, 1007, 1052
AluI	AGCT	9 cut(s)	80, 131, 266, 440, 779, 908, 956, 1007, 1052
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	567, 580
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	957
ApeKI	GCWGC	4 cut(s)	440, 443, 548, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	1081, 1113
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	598, 946
AvaI	CYCGRG	1 cut(s)	957
BaeI	ACNNNNGTAYC	2 cut(s)	844, 877
BamHI	GGATCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	560
BarI	GAAGNNNNNNTAC	4 cut(s)	646, 678, 858, 890
BbsI	GAAGAC	1 cut(s)	1064
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	4 cut(s)	427, 430, 535, 976
BccI	CCATC	4 cut(s)	123, 415, 907, 1111
BciT130I	CCWGG	1 cut(s)	883
BciVI	GTATCC	1 cut(s)	761
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	7 cut(s)	182, 297, 513, 639, 780, 797, 804
BfuI	GTATCC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	5 cut(s)	275, 441, 444, 549, 990
BlsI	GCNGC	5 cut(s)	276, 442, 445, 550, 991
BmcAI	AGTACT	2 cut(s)	97, 664
Bme1390I	CCNGG	2 cut(s)	533, 883
BmeT110I	CYCGRG	1 cut(s)	957
BmiI	GGNNCC	2 cut(s)	557, 574
BmrFI	CCNGG	2 cut(s)	533, 883
BmsI	GCATC	2 cut(s)	157, 597
BpiI	GAAGAC	1 cut(s)	1064
BpmI	CTGGAG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	274
BpuMI	CCSGG	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	1061
BsaJI	CCNNGG	2 cut(s)	9, 882
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	4 cut(s)	682, 712, 1078, 1108
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	1 cut(s)	883
BseDI	CCNNGG	2 cut(s)	9, 882
BseGI	GGATG	3 cut(s)	169, 612, 826
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	4 cut(s)	747, 783, 900, 933
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	90, 213
BseXI	GCAGC	4 cut(s)	427, 430, 535, 976
BsiHKAI	GWGCWC	1 cut(s)	964
BsiHKCI	CYCGRG	1 cut(s)	957
BsiSI	CCGG	4 cut(s)	519, 532, 545, 584
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	362
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	2 cut(s)	214, 678
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	560, 964
Bsp143I	GATC	4 cut(s)	5, 452, 572, 772
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	85, 275, 300, 702
BspCNI	CTCAG	4 cut(s)	748, 782, 901, 934
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	557, 574
BspPI	GGATC	2 cut(s)	567, 580
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	9, 882
BssMI	GATC	4 cut(s)	5, 452, 572, 772
BssNI	GRCGYC	1 cut(s)	1061
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	883
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	893
BstACI	GRCGYC	1 cut(s)	1061
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	499, 524
BstDEI	CTNAG	4 cut(s)	756, 769, 909, 942
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	169, 612, 826
BstKTI	GATC	4 cut(s)	8, 455, 575, 775
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	5, 452, 572, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 607, 833
BstNI	CCWGG	1 cut(s)	883
BstNSI	RCATGY	1 cut(s)	597
BstPI	GGTNACC	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	531, 881
BstV1I	GCAGC	4 cut(s)	427, 430, 535, 976
BstV2I	GAAGAC	1 cut(s)	1064
BstX2I	RGATCY	3 cut(s)	5, 452, 572
BstYI	RGATCY	3 cut(s)	5, 452, 572
BsuI	GTATCC	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	169, 612, 826
Cac8I	GCNNGC	2 cut(s)	499, 524
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	518
Csp6I	GTAC	3 cut(s)	96, 663, 853
CviAII	CATG	8 cut(s)	10, 448, 472, 594, 602, 671, 844, 893
CviQI	GTAC	3 cut(s)	96, 663, 853
DdeI	CTNAG	4 cut(s)	756, 769, 909, 942
DpnI	GATC	4 cut(s)	7, 454, 574, 774
DpnII	GATC	4 cut(s)	5, 452, 572, 772
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	560
Eco32I	GATATC	1 cut(s)	564
Eco57I	CTGAAG	2 cut(s)	420, 1029
Eco88I	CYCGRG	1 cut(s)	957
Eco91I	GGTNACC	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	881
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	8 cut(s)	13, 451, 475, 597, 605, 674, 847, 896
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	8 cut(s)	9, 447, 471, 593, 601, 670, 843, 892
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	275, 441, 444, 549, 990
FokI	GGATG	3 cut(s)	176, 619, 833
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	275, 441, 444, 549, 990
FspBI	CTAG	7 cut(s)	182, 297, 513, 639, 780, 797, 804
GluI	GCNGC	5 cut(s)	275, 441, 444, 549, 990
GsuI	CTGGAG	1 cut(s)	51
HapII	CCGG	4 cut(s)	519, 532, 545, 584
Hin1I	GRCGYC	1 cut(s)	1061
Hin1II	CATG	8 cut(s)	13, 451, 475, 597, 605, 674, 847, 896
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	1050
HinfI	GANTC	4 cut(s)	392, 580, 728, 760
HpaI	GTTAAC	1 cut(s)	975
HpaII	CCGG	4 cut(s)	519, 532, 545, 584
HphI	GGTGA	2 cut(s)	598, 946
Hpy166II	GTNNAC	3 cut(s)	205, 382, 975
Hpy188I	TCNGA	3 cut(s)	765, 772, 1066
Hpy188III	TCNNGA	6 cut(s)	30, 195, 513, 570, 671, 797
Hpy8I	GTNNAC	3 cut(s)	205, 382, 975
Hpy99I	CGWCG	2 cut(s)	571, 1066
HpyAV	CCTTC	7 cut(s)	162, 274, 305, 519, 931, 993, 1137
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	1061
HpyCH4V	TGCA	9 cut(s)	170, 350, 497, 551, 610, 741, 992, 1028, 1119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 607, 833
HpyF3I	CTNAG	4 cut(s)	756, 769, 909, 942
HpySE526I	ACGT	1 cut(s)	1061
Hsp92I	GRCGYC	1 cut(s)	1061
Hsp92II	CATG	8 cut(s)	13, 451, 475, 597, 605, 674, 847, 896
KspAI	GTTAAC	1 cut(s)	975
Kzo9I	GATC	4 cut(s)	5, 452, 572, 772
LmnI	GCTCC	4 cut(s)	77, 271, 283, 555
Lsp1109I	GCAGC	4 cut(s)	427, 430, 535, 976
LweI	GCATC	2 cut(s)	157, 597
MaeI	CTAG	7 cut(s)	182, 297, 513, 639, 780, 797, 804
MaeII	ACGT	1 cut(s)	1061
MaeIII	GTNAC	2 cut(s)	141, 614
MalI	GATC	4 cut(s)	7, 454, 574, 774
MboI	GATC	4 cut(s)	5, 452, 572, 772
MboII	GAAGA	8 cut(s)	26, 317, 385, 875, 910, 1022, 1069, 1098
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	3 cut(s)	5, 452, 572
MhlI	GDGCHC	2 cut(s)	560, 964
MluCI	AATT	2 cut(s)	492, 1121
MlyI	GAGTC	2 cut(s)	386, 574
MmeI	TCCRAC	1 cut(s)	1044
MseI	TTAA	1 cut(s)	974
MslI	CAYNNNNRTG	2 cut(s)	175, 360
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	4 cut(s)	519, 532, 545, 584
MspR9I	CCNGG	2 cut(s)	533, 883
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	214, 678
MvaI	CCWGG	1 cut(s)	883
MwoI	GCNNNNNNNGC	3 cut(s)	283, 607, 833
NciI	CCSGG	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	5, 452, 572, 772
NlaIII	CATG	8 cut(s)	13, 451, 475, 597, 605, 674, 847, 896
NlaIV	GGNNCC	2 cut(s)	557, 574
NspI	RCATGY	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	957
PagI	TCATGA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PctI	GAATGC	2 cut(s)	214, 678
PfeI	GAWTC	2 cut(s)	728, 760
PkrI	GCNGC	5 cut(s)	276, 442, 445, 550, 991
PleI	GAGTC	2 cut(s)	386, 574
PpsI	GAGTC	2 cut(s)	386, 574
Psp6I	CCWGG	1 cut(s)	881
PspEI	GGTNACC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	881
PspN4I	GGNNCC	2 cut(s)	557, 574
PspXI	VCTCGAGB	1 cut(s)	957
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	5, 452, 572
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	97, 664, 854
RsaNI	GTAC	3 cut(s)	96, 663, 853
RseI	CAYNNNNRTG	2 cut(s)	175, 360
SaqAI	TTAA	1 cut(s)	974
SatI	GCNGC	5 cut(s)	275, 441, 444, 549, 990
Sau3AI	GATC	4 cut(s)	5, 452, 572, 772
ScaI	AGTACT	2 cut(s)	97, 664
SchI	GAGTC	2 cut(s)	386, 574
ScrFI	CCNGG	2 cut(s)	533, 883
SduI	GDGCHC	2 cut(s)	560, 964
SfaNI	GCATC	2 cut(s)	157, 597
Sfr274I	CTCGAG	1 cut(s)	957
SlaI	CTCGAG	1 cut(s)	957
SmiMI	CAYNNNNRTG	2 cut(s)	175, 360
SmlI	CTYRAG	2 cut(s)	253, 957
SmoI	CTYRAG	2 cut(s)	253, 957
Sse9I	AATT	2 cut(s)	492, 1121
SsiI	CCGC	4 cut(s)	85, 275, 300, 702
SspMI	CTAG	7 cut(s)	182, 297, 513, 639, 780, 797, 804
StyD4I	CCNGG	2 cut(s)	531, 881
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	1064
TaqI	TCGA	3 cut(s)	194, 578, 958
TasI	AATT	2 cut(s)	492, 1121
TatI	WGTACW	2 cut(s)	95, 662
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	728, 760
Tru1I	TTAA	1 cut(s)	974
Tru9I	TTAA	1 cut(s)	974
TseI	GCWGC	4 cut(s)	440, 443, 548, 989
TspDTI	ATGAA	5 cut(s)	324, 837, 965, 1059, 1098
XbaI	TCTAGA	2 cut(s)	512, 796
XceI	RCATGY	1 cut(s)	597
XhoI	CTCGAG	1 cut(s)	957
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	7 cut(s)	182, 297, 513, 639, 780, 797, 804
ZraI	GACGTC	1 cut(s)	1062
ZrmI	AGTACT	2 cut(s)	97, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.