Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008358

Physical Location & Seq

Genomic Coordinates Forward (+)

6578409 .. 6580137

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGATCCATAGAGGATAAGGAGATTTCTGGAGGGACTGGTATAAATTTTGAGTTTCAGAAAGCAAATGGAGGTAGCAGGACACCCCATCACAGAACAGCCTTGGGAAAACCAACACCTTCCAAATGGGATGATGCACAAAAATGGTTGGTGGGATTGTCCAGAGGAGCAGAAAAAAACAAACCCAGAAGCTCAAATGCTGATGACTTGAGACTCATAGCTCCTGTACCACAGAAGGAGCAGGACTATTCAGATGGAGAAGAAGAACATCACCAACAAGAAGAAAATGGCTGTCCTAGGTCAGCTATGGCGAATCAGTACGATGTGGAGACGAAGAAAGTGGATTGTGATGATTCAATGTGGAGAAGCAGCAACAAATCTACGGAGAACTCGACAGCGACTATGAGATCTATATGTTTGAGGGACATGGGGACAGAAATGACCCCTACTGCAAGCCAGGAACCTTCAAGAACTACCACCCCTATTCGAGCAACTACTCCAGCCGCACGCAGCCCTATATCTTCGGGGTCATCTACCCCGGTGAGGCCGTGCCAGCATGGGAGGGAGGGTGCTCATCAGGGGTATCAAGTATCAACTGATGGGGGAAGAAGTAGTCATGATCAGACCAGTTCTTGTGGGAGAGGGAGCGGCGCAGCGAAACATTATGCAGAAGAATCAAATGCTTGCAAGAATTTGTTTGAGAATCCGAGTTCAGATCAAGGTACGAAACCGAGTCCCCTGGAAACAAAAGCAATGGCTTGGGATGAAGCAGAACGTGCCAAATATATGGCAAGGTATAAACGTGAAGAGTTGAGAATACAAGCCTGGGAAAACCATGAGAAGAGGAAAGCCGAGATGGAAATGCAAAAAATGGAGGTGAAAGCGGAGAGAATGAAAACTCGGGGCCAAGAAAAGTTAACGAATAAACTCGCAGCAACCAGAAGAATAGCTGAAGAAAAGAGGGCAAATGCAGAGGCCAAACTCAATGAAAATGCTTTGAGGACTTCAGAAAAGGCAGATTACATAAGGAGGACTGGTCATTTGCCCTCTACTTTCTCTTTCAAGCTGCCTTCTCTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

362

Amino Acids

40.38

Weight (kDa)

8.83

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67590 AT1G67590
fragaria_vesca	FvH4_4g24210 FvH4_4g24210 FvH4_4g24210
malus_domestica	MD13G1113300.v1.1 MD16G1112600.v1.1
prunus_persica	Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1
pyrus_communis	pycom13g09870 pycom16g09520
rosa_chinensis	RchiOBHm_Chr4g0431051
rosa_laevigata	RLG00000006929
rosa_multiflora	Rmu_sc0010203.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372670
rosa_rugosa	Rorug04G0247800 Rorug04G0247900
rosa_samantha	Rh4AG304500 Rh4BG311700 Rh4CG328000 Rh4DG308200
rosa_wichuraiana	Rw4G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	648
AciI	CCGC	3 cut(s)	504, 648, 884
AcsI	RAATTY	2 cut(s)	46, 691
AcuI	CTGAAG	2 cut(s)	972, 990
AfaI	GTAC	3 cut(s)	228, 320, 724
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	357, 468, 1063
AjnI	CCWGG	3 cut(s)	456, 738, 824
AluBI	AGCT	5 cut(s)	192, 221, 305, 950, 1066
AluI	AGCT	5 cut(s)	192, 221, 305, 950, 1066
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	205, 323
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	3 cut(s)	545, 904, 975
ApeKI	GCWGC	5 cut(s)	369, 510, 653, 932, 1066
ApoI	RAATTY	2 cut(s)	46, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	1024, 1056
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	263, 553, 889
AvaI	CYCGRG	1 cut(s)	900
AvrII	CCTAGG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	5 cut(s)	381, 522, 665, 944, 1053
BccI	CCATC	4 cut(s)	96, 248, 593, 850
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	3 cut(s)	458, 740, 826
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	205, 323
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	407
BisI	GCNGC	7 cut(s)	370, 504, 511, 649, 654, 933, 1067
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	7 cut(s)	371, 505, 512, 650, 655, 934, 1068
Bme1390I	CCNGG	4 cut(s)	458, 539, 740, 826
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	2 cut(s)	462, 905
BmrFI	CCNGG	4 cut(s)	458, 539, 740, 826
BmsI	GCATC	1 cut(s)	124
BpmI	CTGGAG	2 cut(s)	51, 483
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	539
BsaJI	CCNNGG	5 cut(s)	102, 296, 537, 738, 825
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 1021, 1051
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	3 cut(s)	43, 627, 1039
Bse3DI	GCAATG	1 cut(s)	759
BseBI	CCWGG	3 cut(s)	458, 740, 826
BseDI	CCNNGG	5 cut(s)	102, 296, 537, 738, 825
BseGI	GGATG	2 cut(s)	136, 769
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	43, 627, 1039
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	5 cut(s)	381, 522, 665, 944, 1053
BshFI	GGCC	3 cut(s)	547, 906, 977
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	900
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	4 cut(s)	49, 437, 445, 720
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	205, 323
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	4 cut(s)	49, 437, 445, 720
BsnI	GGCC	3 cut(s)	547, 906, 977
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	5, 407, 619, 715
BspACI	CCGC	3 cut(s)	504, 648, 884
BspANI	GGCC	3 cut(s)	547, 906, 977
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	462, 905
BsrBI	CCGCTC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	43, 627, 1039
BssECI	CCNNGG	5 cut(s)	102, 296, 537, 738, 825
BssMI	GATC	4 cut(s)	5, 407, 619, 715
BssT1I	CCWWGG	2 cut(s)	102, 296
Bst2UI	CCWGG	3 cut(s)	458, 740, 826
Bst6I	CTCTTC	2 cut(s)	801, 836
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	4 cut(s)	454, 508, 554, 685
BstF5I	GGATG	2 cut(s)	136, 769
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	4 cut(s)	8, 410, 622, 718
BstMAI	GTCTC	2 cut(s)	205, 323
BstMBI	GATC	4 cut(s)	5, 407, 619, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 776
BstNI	CCWGG	3 cut(s)	458, 740, 826
BstSCI	CCNGG	4 cut(s)	456, 537, 738, 824
BstV1I	GCAGC	5 cut(s)	381, 522, 665, 944, 1053
BstX2I	RGATCY	2 cut(s)	5, 407
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	2 cut(s)	5, 407
BsuRI	GGCC	3 cut(s)	547, 906, 977
BtsCI	GGATG	2 cut(s)	136, 769
Cac8I	GCNNGC	4 cut(s)	454, 508, 554, 685
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	904
Csp6I	GTAC	3 cut(s)	227, 319, 723
CviAII	CATG	4 cut(s)	427, 557, 617, 836
CviQI	GTAC	3 cut(s)	227, 319, 723
DpnI	GATC	4 cut(s)	7, 409, 621, 717
DpnII	GATC	4 cut(s)	5, 407, 619, 715
Eam1104I	CTCTTC	2 cut(s)	801, 836
EarI	CTCTTC	2 cut(s)	801, 836
Eco130I	CCWWGG	2 cut(s)	102, 296
Eco57I	CTGAAG	2 cut(s)	972, 990
Eco88I	CYCGRG	1 cut(s)	900
EcoRII	CCWGG	3 cut(s)	456, 738, 824
EcoT14I	CCWWGG	2 cut(s)	102, 296
ErhI	CCWWGG	2 cut(s)	102, 296
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	4 cut(s)	430, 560, 620, 839
FaqI	GGGAC	4 cut(s)	49, 437, 445, 720
FatI	CATG	4 cut(s)	426, 556, 616, 835
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	7 cut(s)	370, 504, 511, 649, 654, 933, 1067
FokI	GGATG	2 cut(s)	143, 776
Fsp4HI	GCNGC	7 cut(s)	370, 504, 511, 649, 654, 933, 1067
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	7 cut(s)	370, 504, 511, 649, 654, 933, 1067
GsuI	CTGGAG	2 cut(s)	51, 483
HaeIII	GGCC	3 cut(s)	547, 906, 977
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	4 cut(s)	430, 560, 620, 839
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	1 cut(s)	918
HindII	GTYRAC	1 cut(s)	918
HinfI	GANTC	6 cut(s)	213, 313, 353, 674, 703, 733
HpaI	GTTAAC	1 cut(s)	918
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	3 cut(s)	263, 553, 889
Hpy166II	GTNNAC	1 cut(s)	918
Hpy188I	TCNGA	6 cut(s)	60, 253, 624, 708, 715, 1009
Hpy188III	TCNNGA	4 cut(s)	30, 162, 468, 617
Hpy8I	GTNNAC	1 cut(s)	918
HpyAV	CCTTC	4 cut(s)	129, 229, 474, 1080
HpyCH4IV	ACGT	2 cut(s)	775, 802
HpyCH4V	TGCA	6 cut(s)	137, 452, 668, 687, 865, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 776
HpySE526I	ACGT	2 cut(s)	775, 802
Hsp92II	CATG	4 cut(s)	430, 560, 620, 839
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	918
Kzo9I	GATC	4 cut(s)	5, 407, 619, 715
LmnI	GCTCC	4 cut(s)	167, 226, 238, 645
Lsp1109I	GCAGC	5 cut(s)	381, 522, 665, 944, 1053
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	775, 802
MalI	GATC	4 cut(s)	7, 409, 621, 717
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	4 cut(s)	5, 407, 619, 715
MflI	RGATCY	2 cut(s)	5, 407
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	2 cut(s)	46, 691
MlyI	GAGTC	2 cut(s)	207, 742
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	4 cut(s)	458, 539, 740, 826
MvaI	CCWGG	3 cut(s)	458, 740, 826
MwoI	GCNNNNNNNGC	2 cut(s)	553, 776
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	4 cut(s)	5, 407, 619, 715
NlaIII	CATG	4 cut(s)	430, 560, 620, 839
NlaIV	GGNNCC	2 cut(s)	462, 905
NmeAIII	GCCGAG	1 cut(s)	877
PagI	TCATGA	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	313, 353, 674, 703
PkrI	GCNGC	7 cut(s)	371, 505, 512, 650, 655, 934, 1068
PleI	GAGTC	2 cut(s)	207, 741
PpsI	GAGTC	2 cut(s)	207, 741
Psp6I	CCWGG	3 cut(s)	456, 738, 824
PspGI	CCWGG	3 cut(s)	456, 738, 824
PspN4I	GGNNCC	2 cut(s)	462, 905
PspPI	GGNCC	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	5, 407
RsaI	GTAC	3 cut(s)	228, 320, 724
RsaNI	GTAC	3 cut(s)	227, 319, 723
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	917
SatI	GCNGC	7 cut(s)	370, 504, 511, 649, 654, 933, 1067
Sau3AI	GATC	4 cut(s)	5, 407, 619, 715
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	2 cut(s)	207, 742
ScrFI	CCNGG	4 cut(s)	458, 539, 740, 826
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	46, 691
SsiI	CCGC	3 cut(s)	504, 648, 884
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	4 cut(s)	456, 537, 738, 824
StyI	CCWWGG	2 cut(s)	102, 296
TaiI	ACGT	2 cut(s)	778, 805
TaqI	TCGA	2 cut(s)	392, 487
TasI	AATT	2 cut(s)	46, 691
TauI	GCSGC	2 cut(s)	506, 651
TfiI	GAWTC	4 cut(s)	313, 353, 674, 703
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TseI	GCWGC	5 cut(s)	369, 510, 653, 932, 1066
TspDTI	ATGAA	3 cut(s)	780, 908, 1002
TspGWI	ACGGA	1 cut(s)	398
XapI	RAATTY	2 cut(s)	46, 691
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.