Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010203.1

Orthogroup ID

OG0008358

Physical Location & Seq

Genomic Coordinates Reverse (-)

14706 .. 16672

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010203.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgagatccatagaggataaggagatttctggaggcaatgctataagttttgagtttcacagtaaacagaatggaggaggagctaaccgcactagtggcaacactacttcttcccatcatcatagaacagctttgggaaagttaccaacaccatcaaaatgggatgatgcacagaaatggctagtggggttgtcaagaggagtagacaaaacgcagtccaagaccaaacccagaaactcaaatgcagatgacttgaggctcatagctcctgtgccgcagaaggagcaggactactcgagcggagacgaggatggagaagacgatagacacggaaaagaagcaaatgggtgttctggaactgcagtggcaaatcattacgatgtggagacgaagaaagtggactgtgatgactcggtttggaggagcaacaagcctatggagaacccaacttcagctgctgccatgagatccatatgtttgagggacatgggaactgagatgaccccaattgcaagccaagagccttcgagaaccggcacgcctatccgggccacaactccggctgcaaggagcccgatatcttcgggatcctcgactccggtgagggcatgtcagcatgggatgcaagctagccagcaggggtatcaagggtctggtgataatggtagaagtactcatgagggcattccttgtgggagagggagtggcggaagcaataaaaggtatgtggaggaatcaaatgtgtgcaagaatagtatgcctgagaatcagagttcagatcaagcgaggaagccaaatcctctagaaactagagcaatggcttgggatgaggcagaacgcgctaaatacatggcaaggtacaagcgtgaagaggtaaagatacaagcctgggaaaaccatgagaagaggaaagctgagatggaaatgagaaaaatggaggtgaaggctgaaagaatgaaatctcgggcacaagaaaagttaacaaataaacttgctgcaacgagaagaatagccgaagaaaagagggctaatgcagaggccaaactcaatgaaaaagctttgaagacgtcggaaaaggcagattacataaggaggactggtcatttgccctcttctttctcttgcaagttgccttctctttgctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

382

Amino Acids

42.26

Weight (kDa)

9.18

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67590 AT1G67590
fragaria_vesca	FvH4_4g24210 FvH4_4g24210 FvH4_4g24210
malus_domestica	MD13G1113300.v1.1 MD16G1112600.v1.1
prunus_persica	Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1
pyrus_communis	pycom13g09870 pycom16g09520
rosa_chinensis	RchiOBHm_Chr4g0431051
rosa_laevigata	RLG00000006929
rosa_multiflora	Rmu_sc0010203.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372670
rosa_rugosa	Rorug04G0247800 Rorug04G0247900
rosa_samantha	Rh4AG304500 Rh4BG311700 Rh4CG328000 Rh4DG308200
rosa_wichuraiana	Rw4G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1070
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	840
AciI	CCGC	4 cut(s)	88, 275, 300, 708
AclWI	GGATC	3 cut(s)	462, 582, 595
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	1067
AfaI	GTAC	2 cut(s)	673, 860
AgsI	TTSAA	1 cut(s)	1063
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	887
AluBI	AGCT	7 cut(s)	83, 131, 266, 455, 629, 914, 1058
AluI	AGCT	7 cut(s)	83, 131, 266, 455, 629, 914, 1058
Alw26I	GTCTC	2 cut(s)	297, 380
AlwI	GGATC	3 cut(s)	462, 582, 595
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	2 cut(s)	295, 963
AoxI	GGCC	2 cut(s)	549, 1038
ApeKI	GCWGC	4 cut(s)	455, 458, 563, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
AspLEI	GCGC	1 cut(s)	842
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	613, 668, 952
AsuNHI	GCTAGC	1 cut(s)	629
AvaI	CYCGRG	2 cut(s)	295, 963
BaeGI	GKGCMC	1 cut(s)	970
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BamHI	GGATCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	2 cut(s)	324, 1070
BbvI	GCAGC	4 cut(s)	442, 445, 550, 982
BccI	CCATC	4 cut(s)	123, 160, 305, 913
BciT130I	CCWGG	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	297, 380
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	5 cut(s)	93, 182, 630, 803, 810
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	5 cut(s)	275, 456, 459, 564, 996
BlsI	GCNGC	5 cut(s)	276, 457, 460, 565, 997
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	548, 889
BmeT110I	CYCGRG	2 cut(s)	295, 963
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	572, 589
BmrFI	CCNGG	2 cut(s)	548, 889
BmsI	GCATC	2 cut(s)	157, 612
BmtI	GCTAGC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	324, 1070
BpmI	CTGGAG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	274
BpuMI	CCSGG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	1067
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	4 cut(s)	688, 718, 1084, 1114
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	1102
Bse3DI	GCAATG	2 cut(s)	43, 822
BseBI	CCWGG	1 cut(s)	889
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	4 cut(s)	169, 316, 627, 832
BseMI	GCAATG	2 cut(s)	43, 822
BseMII	CTCAG	3 cut(s)	486, 753, 906
BseNI	ACTGG	1 cut(s)	1102
BseRI	GAGGAG	4 cut(s)	90, 93, 213, 436
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	4 cut(s)	442, 445, 550, 982
Bsh1236I	CGCG	1 cut(s)	840
BshFI	GGCC	2 cut(s)	551, 1040
BsiHKCI	CYCGRG	2 cut(s)	295, 963
BsiSI	CCGG	4 cut(s)	534, 547, 560, 599
BslFI	GGGAC	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	297, 380
BsmBI	CGTCTC	2 cut(s)	297, 380
BsmFI	GGGAC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	551, 1040
BsoBI	CYCGRG	2 cut(s)	295, 963
Bsp1286I	GDGCHC	2 cut(s)	575, 970
Bsp143I	GATC	4 cut(s)	5, 467, 587, 778
BspACI	CCGC	4 cut(s)	88, 275, 300, 708
BspANI	GGCC	2 cut(s)	551, 1040
BspCNI	CTCAG	3 cut(s)	487, 754, 907
BspFNI	CGCG	1 cut(s)	840
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	572, 589
BspMAI	CTGCAG	1 cut(s)	364
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	3 cut(s)	462, 582, 595
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	43, 822
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	1102
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	4 cut(s)	5, 467, 587, 778
BssNI	GRCGYC	1 cut(s)	1067
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	2 cut(s)	62, 404
Bst6I	CTCTTC	3 cut(s)	864, 899, 1117
BstACI	GRCGYC	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstC8I	GCNNGC	5 cut(s)	514, 539, 627, 631, 635
BstDEI	CTNAG	3 cut(s)	495, 762, 915
BstF5I	GGATG	4 cut(s)	169, 316, 627, 832
BstFNI	CGCG	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	842
BstKTI	GATC	4 cut(s)	8, 470, 590, 781
BstMAI	GTCTC	2 cut(s)	297, 380
BstMBI	GATC	4 cut(s)	5, 467, 587, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 283, 622, 839
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	546, 887
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	1 cut(s)	840
BstV1I	GCAGC	4 cut(s)	442, 445, 550, 982
BstV2I	GAAGAC	2 cut(s)	324, 1070
BstX2I	RGATCY	3 cut(s)	5, 467, 587
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	3 cut(s)	5, 467, 587
BsuRI	GGCC	2 cut(s)	551, 1040
BtsCI	GGATG	4 cut(s)	169, 316, 627, 832
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	5 cut(s)	514, 539, 627, 631, 635
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	842
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	672, 859
CviAII	CATG	7 cut(s)	463, 487, 609, 617, 677, 850, 899
CviQI	GTAC	2 cut(s)	672, 859
DdeI	CTNAG	3 cut(s)	495, 762, 915
DpnI	GATC	4 cut(s)	7, 469, 589, 780
DpnII	GATC	4 cut(s)	5, 467, 587, 778
Eam1104I	CTCTTC	3 cut(s)	864, 899, 1117
EarI	CTCTTC	3 cut(s)	864, 899, 1117
EciI	GGCGGA	1 cut(s)	723
Eco24I	GRGCYC	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	2 cut(s)	295, 963
EcoRII	CCWGG	1 cut(s)	887
EcoRV	GATATC	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	575
Esp3I	CGTCTC	2 cut(s)	297, 380
FaeI	CATG	7 cut(s)	466, 490, 612, 620, 680, 853, 902
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	7 cut(s)	462, 486, 608, 616, 676, 849, 898
FauNDI	CATATG	1 cut(s)	473
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	275, 456, 459, 564, 996
FokI	GGATG	4 cut(s)	176, 323, 634, 839
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	5 cut(s)	275, 456, 459, 564, 996
FspBI	CTAG	5 cut(s)	93, 182, 630, 803, 810
GlaI	GCGC	1 cut(s)	841
GluI	GCNGC	5 cut(s)	275, 456, 459, 564, 996
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	551, 1040
HapII	CCGG	4 cut(s)	534, 547, 560, 599
HhaI	GCGC	1 cut(s)	842
Hin1I	GRCGYC	1 cut(s)	1067
Hin1II	CATG	7 cut(s)	466, 490, 612, 620, 680, 853, 902
Hin6I	GCGC	1 cut(s)	840
HinP1I	GCGC	1 cut(s)	840
HincII	GTYRAC	1 cut(s)	981
HindII	GTYRAC	1 cut(s)	981
HindIII	AAGCTT	1 cut(s)	1056
HinfI	GANTC	4 cut(s)	410, 595, 734, 766
HpaI	GTTAAC	1 cut(s)	981
HpaII	CCGG	4 cut(s)	534, 547, 560, 599
HphI	GGTGA	3 cut(s)	613, 668, 952
Hpy166II	GTNNAC	4 cut(s)	65, 205, 400, 981
Hpy188I	TCNGA	3 cut(s)	771, 778, 1072
Hpy188III	TCNNGA	7 cut(s)	30, 195, 354, 528, 585, 677, 803
Hpy8I	GTNNAC	4 cut(s)	65, 205, 400, 981
Hpy99I	CGWCG	1 cut(s)	1072
HpyAV	CCTTC	4 cut(s)	274, 534, 937, 1143
HpyCH4III	ACNGT	2 cut(s)	62, 404
HpyCH4IV	ACGT	1 cut(s)	1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 283, 622, 839
HpyF3I	CTNAG	3 cut(s)	495, 762, 915
HpySE526I	ACGT	1 cut(s)	1067
Hsp92I	GRCGYC	1 cut(s)	1067
Hsp92II	CATG	7 cut(s)	466, 490, 612, 620, 680, 853, 902
HspAI	GCGC	1 cut(s)	840
KspAI	GTTAAC	1 cut(s)	981
Kzo9I	GATC	4 cut(s)	5, 467, 587, 778
LmnI	GCTCC	5 cut(s)	80, 271, 283, 423, 570
Lsp1109I	GCAGC	4 cut(s)	442, 445, 550, 982
LweI	GCATC	2 cut(s)	157, 612
MaeI	CTAG	5 cut(s)	93, 182, 630, 803, 810
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	4 cut(s)	7, 469, 589, 780
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	4 cut(s)	5, 467, 587, 778
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	5, 467, 587
MhlI	GDGCHC	2 cut(s)	575, 970
MluCI	AATT	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	404, 589
MmeI	TCCRAC	1 cut(s)	1050
MseI	TTAA	1 cut(s)	980
MslI	CAYNNNNRTG	3 cut(s)	157, 175, 378
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	4 cut(s)	534, 547, 560, 599
MspR9I	CCNGG	2 cut(s)	548, 889
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	889
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	4 cut(s)	96, 283, 622, 839
NciI	CCSGG	1 cut(s)	548
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	4 cut(s)	5, 467, 587, 778
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	7 cut(s)	466, 490, 612, 620, 680, 853, 902
NlaIV	GGNNCC	2 cut(s)	572, 589
NspI	RCATGY	1 cut(s)	612
PaeR7I	CTCGAG	1 cut(s)	295
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	734, 766
PkrI	GCNGC	5 cut(s)	276, 457, 460, 565, 997
PleI	GAGTC	2 cut(s)	404, 589
PpsI	GAGTC	2 cut(s)	404, 589
Psp6I	CCWGG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	572, 589
PspPI	GGNCC	1 cut(s)	549
PspXI	VCTCGAGB	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	5, 467, 587
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	673, 860
RsaNI	GTAC	2 cut(s)	672, 859
RseI	CAYNNNNRTG	3 cut(s)	157, 175, 378
SaqAI	TTAA	1 cut(s)	980
SatI	GCNGC	5 cut(s)	275, 456, 459, 564, 996
Sau3AI	GATC	4 cut(s)	5, 467, 587, 778
Sau96I	GGNCC	1 cut(s)	549
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	2 cut(s)	404, 589
ScrFI	CCNGG	2 cut(s)	548, 889
SduI	GDGCHC	2 cut(s)	575, 970
SfaNI	GCATC	2 cut(s)	157, 612
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	3 cut(s)	157, 175, 378
SmlI	CTYRAG	2 cut(s)	253, 295
SmoI	CTYRAG	2 cut(s)	253, 295
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	1 cut(s)	507
SsiI	CCGC	4 cut(s)	88, 275, 300, 708
SspMI	CTAG	5 cut(s)	93, 182, 630, 803, 810
StyD4I	CCNGG	2 cut(s)	546, 887
TaaI	ACNGT	2 cut(s)	62, 404
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	3 cut(s)	296, 527, 593
TasI	AATT	1 cut(s)	507
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	734, 766
Tru1I	TTAA	1 cut(s)	980
Tru9I	TTAA	1 cut(s)	980
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	4 cut(s)	455, 458, 563, 995
TspDTI	ATGAA	2 cut(s)	971, 1065
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	802
XceI	RCATGY	1 cut(s)	612
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	5 cut(s)	93, 182, 630, 803, 810
ZraI	GACGTC	1 cut(s)	1068
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.