Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008358

Physical Location & Seq

Genomic Coordinates Reverse (-)

24753887 .. 24757654

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGATCCATAGAGGATAAGGGGTGCTATAACAACCATGGACCAACTCAGGAGATTTCTGGCAGCAGTGCTATAAATTTTGAGTTTCACAAAGCAAATGGGGCTAGCCGTACCCCTCATCATCGAACAGCCTTAGGCAAACCAACGCCATCAAAATGGGATGATGCACAAAAATGGCTAGTGGGGCTGTCAAGAGGACCAGACAAAAACCAATCCAAAACCAAGCCCAGAAACTCAAATGCAGATGACTTGAGACTCATAGCTCCTGTGCCACAGAAGGAGCAGGACTATTCAAGTGGAGAGGATGATGGGGTAGAAGATCAACAAGAAGAAGAAGAAGAGGAAAATGGATGTGATGGCTCTGCAAGGCCAAATCAATATGATGTGGAGACAAAGAAAGTGGACTGTGATGACTCAGTTTGGAGAAGCAACAAACCAATGGAAAACTCAACAGCAGCTATGAGATCTTTATGTTTGAGGGACATGGGAACAGAAATGACCCCCATTGCAAGCCAAGAGCCTTCGAGAACTGCCACCCCTATTAGAGCCACAACTCCTGCGGCACGGAGCCCTATATCTTCAGGATCCTCCACCCCAGTAAGGCCATGCCAACATGGGATGCAAGCTAGTCAGGGCTATCAAAAATCCACTGATGGCAGAAGTAGTCATGAGGCCAAGTCTTGTGGGAGAGGGAGTGGTGCAGCCAAAAGGTATGTAGAAGAATCAAATGCTTGCAAGAGTATGCCTGACAACCAGAACTCAGATCAAGCTAGAAAACCAAGTCCCCTAGAAACTCGAGCAATGGCTTGGGATGAGGCAGAACGTGCTAAATATATGGCAAGGTATAAACGCGAAGAGGTCAGAATACAAGCCTGGGAAAATCATGAGAAGAGGAAAGCTGAGATGGAAATGAGAAAAATGGAGGTGAAAGCTGAGAGAATGAAAGCTCGCGGTCAAGAAAAGTTAACGAATAAACTTGCCGCGACTAGAAGAATAGCTGAAGAAAAGAGGGCTAATGCAGAGGCCAAACTCAATGAAAAAGCTTTAAGAACTTCAGAAAAGGCAGATTACATAAGGAGGACTGGCCATTTGCCCTCTACATTCTCATTCAAGTTGCCTTCTCTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

378

Amino Acids

42.28

Weight (kDa)

8.86

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67590 AT1G67590
fragaria_vesca	FvH4_4g24210 FvH4_4g24210 FvH4_4g24210
malus_domestica	MD13G1113300.v1.1 MD16G1112600.v1.1
prunus_persica	Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1 Prupe.1G232800_v2.0.a1
pyrus_communis	pycom13g09870 pycom16g09520
rosa_chinensis	RchiOBHm_Chr4g0431051
rosa_laevigata	RLG00000006929
rosa_multiflora	Rmu_sc0010203.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372670
rosa_rugosa	Rorug04G0247800 Rorug04G0247900
rosa_samantha	Rh4AG304500 Rh4BG311700 Rh4CG328000 Rh4DG308200
rosa_wichuraiana	Rw4G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	852, 951, 983
AciI	CCGC	3 cut(s)	560, 951, 981
AclWI	GGATC	2 cut(s)	579, 592
AcoI	YGGCCR	1 cut(s)	1084
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	3 cut(s)	564, 1020, 1038
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	294, 1111
AjnI	CCWGG	1 cut(s)	872
AluBI	AGCT	9 cut(s)	263, 458, 626, 770, 899, 932, 947, 998, 1043
AluI	AGCT	9 cut(s)	263, 458, 626, 770, 899, 932, 947, 998, 1043
Alw26I	GTCTC	2 cut(s)	247, 383
AlwI	GGATC	2 cut(s)	579, 592
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	5 cut(s)	368, 602, 672, 1023, 1084
ApeKI	GCWGC	3 cut(s)	63, 455, 701
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	1072, 1104
AspS9I	GGNCC	2 cut(s)	41, 197
AsuHPI	GGTGA	1 cut(s)	937
AsuNHI	GCTAGC	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	41, 197
AxyI	CCTNAGG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	1086
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	572
BbvI	GCAGC	3 cut(s)	75, 467, 713
BccI	CCATC	5 cut(s)	157, 302, 350, 647, 898
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	247, 383
BfaI	CTAG	6 cut(s)	105, 179, 627, 771, 788, 987
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	5 cut(s)	64, 456, 561, 702, 981
BlsI	GCNGC	5 cut(s)	65, 457, 562, 703, 982
Bme1390I	CCNGG	1 cut(s)	874
Bme18I	GGWCC	2 cut(s)	41, 197
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	41, 197
BmiI	GGNNCC	2 cut(s)	569, 586
BmrFI	CCNGG	1 cut(s)	874
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	154, 609
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	37, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse1I	ACTGG	2 cut(s)	596, 1087
Bse21I	CCTNAGG	1 cut(s)	133
Bse3DI	GCAATG	2 cut(s)	504, 807
BseBI	CCWGG	1 cut(s)	874
BseDI	CCNNGG	2 cut(s)	37, 873
BseGI	GGATG	5 cut(s)	166, 310, 356, 624, 817
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMI	GCAATG	2 cut(s)	504, 807
BseMII	CTCAG	5 cut(s)	62, 429, 774, 891, 924
BseNI	ACTGG	2 cut(s)	596, 1087
BseXI	GCAGC	3 cut(s)	75, 467, 713
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	3 cut(s)	852, 951, 983
BshFI	GGCC	5 cut(s)	370, 604, 674, 1025, 1086
BsiHKCI	CYCGRG	1 cut(s)	795
BslFI	GGGAC	2 cut(s)	494, 768
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	2 cut(s)	247, 383
BsmFI	GGGAC	2 cut(s)	494, 768
BsnI	GGCC	5 cut(s)	370, 604, 674, 1025, 1086
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	5 cut(s)	5, 319, 464, 584, 763
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	3 cut(s)	560, 951, 981
BspANI	GGCC	5 cut(s)	370, 604, 674, 1025, 1086
BspCNI	CTCAG	5 cut(s)	61, 428, 773, 892, 925
BspFNI	CGCG	3 cut(s)	852, 951, 983
BspHI	TCATGA	2 cut(s)	667, 883
BspLI	GGNNCC	2 cut(s)	569, 586
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	579, 592
BsrDI	GCAATG	2 cut(s)	504, 807
BsrI	ACTGG	2 cut(s)	596, 1087
BssECI	CCNNGG	2 cut(s)	37, 873
BssMI	GATC	5 cut(s)	5, 319, 464, 584, 763
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	333, 849, 884
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstC8I	GCNNGC	5 cut(s)	106, 511, 624, 733, 949
BstDEI	CTNAG	6 cut(s)	48, 133, 415, 760, 900, 933
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	5 cut(s)	166, 310, 356, 624, 817
BstFNI	CGCG	3 cut(s)	852, 951, 983
BstKTI	GATC	5 cut(s)	8, 322, 467, 587, 766
BstMAI	GTCTC	2 cut(s)	247, 383
BstMBI	GATC	5 cut(s)	5, 319, 464, 584, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 184, 824
BstNI	CCWGG	1 cut(s)	874
BstSCI	CCNGG	1 cut(s)	872
BstUI	CGCG	3 cut(s)	852, 951, 983
BstV1I	GCAGC	3 cut(s)	75, 467, 713
BstX2I	RGATCY	3 cut(s)	5, 464, 584
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	3 cut(s)	5, 464, 584
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	370, 604, 674, 1025, 1086
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	5 cut(s)	166, 310, 356, 624, 817
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 648
Cac8I	GCNNGC	5 cut(s)	106, 511, 624, 733, 949
CciI	TCATGA	2 cut(s)	667, 883
Cfr13I	GGNCC	2 cut(s)	41, 197
Csp6I	GTAC	1 cut(s)	111
CspCI	CAANNNNNGTGG	4 cut(s)	381, 416, 664, 699
CviAII	CATG	6 cut(s)	38, 484, 606, 614, 668, 884
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	6 cut(s)	48, 133, 415, 760, 900, 933
DpnI	GATC	5 cut(s)	7, 321, 466, 586, 765
DpnII	GATC	5 cut(s)	5, 319, 464, 584, 763
EaeI	YGGCCR	1 cut(s)	1084
Eam1104I	CTCTTC	3 cut(s)	333, 849, 884
EarI	CTCTTC	3 cut(s)	333, 849, 884
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	41, 197
Eco57I	CTGAAG	3 cut(s)	564, 1020, 1038
Eco81I	CCTNAGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	872
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	41, 487, 609, 617, 671, 887
FaqI	GGGAC	2 cut(s)	494, 768
FatI	CATG	6 cut(s)	37, 483, 605, 613, 667, 883
Fnu4HI	GCNGC	5 cut(s)	64, 456, 561, 702, 981
FokI	GGATG	5 cut(s)	173, 317, 363, 631, 824
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	5 cut(s)	64, 456, 561, 702, 981
FspBI	CTAG	6 cut(s)	105, 179, 627, 771, 788, 987
GluI	GCNGC	5 cut(s)	64, 456, 561, 702, 981
HaeIII	GGCC	5 cut(s)	370, 604, 674, 1025, 1086
Hin1II	CATG	6 cut(s)	41, 487, 609, 617, 671, 887
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HindIII	AAGCTT	1 cut(s)	1041
HinfI	GANTC	3 cut(s)	255, 413, 722
HpaI	GTTAAC	1 cut(s)	966
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	2 cut(s)	403, 966
Hpy188I	TCNGA	3 cut(s)	763, 863, 1057
Hpy188III	TCNNGA	7 cut(s)	50, 192, 525, 582, 668, 884, 956
Hpy8I	GTNNAC	2 cut(s)	403, 966
HpyAV	CCTTC	3 cut(s)	271, 531, 1128
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	8 cut(s)	167, 242, 365, 509, 622, 701, 735, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 184, 824
HpyF3I	CTNAG	6 cut(s)	48, 133, 415, 760, 900, 933
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	6 cut(s)	41, 487, 609, 617, 671, 887
KspAI	GTTAAC	1 cut(s)	966
Kzo9I	GATC	5 cut(s)	5, 319, 464, 584, 763
LmnI	GCTCC	3 cut(s)	268, 280, 567
Lsp1109I	GCAGC	3 cut(s)	75, 467, 713
LweI	GCATC	2 cut(s)	154, 609
MaeI	CTAG	6 cut(s)	105, 179, 627, 771, 788, 987
MaeII	ACGT	1 cut(s)	823
MalI	GATC	5 cut(s)	7, 321, 466, 586, 765
MboI	GATC	5 cut(s)	5, 319, 464, 584, 763
MflI	RGATCY	3 cut(s)	5, 464, 584
MhlI	GDGCHC	1 cut(s)	572
MlsI	TGGCCA	1 cut(s)	1086
MluCI	AATT	1 cut(s)	76
MluNI	TGGCCA	1 cut(s)	1086
MlyI	GAGTC	2 cut(s)	249, 407
Mox20I	TGGCCA	1 cut(s)	1086
MscI	TGGCCA	1 cut(s)	1086
MseI	TTAA	2 cut(s)	965, 1046
MslI	CAYNNNNRTG	2 cut(s)	154, 172
Msp20I	TGGCCA	1 cut(s)	1086
MspR9I	CCNGG	1 cut(s)	874
MvaI	CCWGG	1 cut(s)	874
MvnI	CGCG	3 cut(s)	852, 951, 983
MwoI	GCNNNNNNNGC	3 cut(s)	101, 184, 824
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	5 cut(s)	5, 319, 464, 584, 763
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	6 cut(s)	41, 487, 609, 617, 671, 887
NlaIV	GGNNCC	2 cut(s)	569, 586
PaeR7I	CTCGAG	1 cut(s)	795
PagI	TCATGA	2 cut(s)	667, 883
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	5 cut(s)	65, 457, 562, 703, 982
PleI	GAGTC	2 cut(s)	249, 407
PpsI	GAGTC	2 cut(s)	249, 407
Psp6I	CCWGG	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	2 cut(s)	569, 586
PspPI	GGNCC	2 cut(s)	41, 197
PspXI	VCTCGAGB	1 cut(s)	795
PsuI	RGATCY	3 cut(s)	5, 464, 584
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	154, 172
SaqAI	TTAA	2 cut(s)	965, 1046
SatI	GCNGC	5 cut(s)	64, 456, 561, 702, 981
Sau3AI	GATC	5 cut(s)	5, 319, 464, 584, 763
Sau96I	GGNCC	2 cut(s)	41, 197
SchI	GAGTC	2 cut(s)	249, 407
ScrFI	CCNGG	1 cut(s)	874
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	2 cut(s)	154, 609
Sfr274I	CTCGAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	41, 197
SlaI	CTCGAG	1 cut(s)	795
SmiMI	CAYNNNNRTG	2 cut(s)	154, 172
SmlI	CTYRAG	2 cut(s)	250, 795
SmoI	CTYRAG	2 cut(s)	250, 795
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	3 cut(s)	560, 951, 981
SspMI	CTAG	6 cut(s)	105, 179, 627, 771, 788, 987
StyD4I	CCNGG	1 cut(s)	872
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	3 cut(s)	124, 524, 796
TasI	AATT	1 cut(s)	76
TauI	GCSGC	2 cut(s)	563, 983
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	2 cut(s)	965, 1046
Tru9I	TTAA	2 cut(s)	965, 1046
TscAI	CASTG	2 cut(s)	73, 655
TseI	GCWGC	3 cut(s)	63, 455, 701
TspDTI	ATGAA	2 cut(s)	956, 1050
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	2 cut(s)	73, 655
VpaK11BI	GGWCC	2 cut(s)	41, 197
XapI	RAATTY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	795
XspI	CTAG	6 cut(s)	105, 179, 627, 771, 788, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.