Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003028

Physical Location & Seq

Genomic Coordinates Forward (+)

41870907 .. 41874293

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCCACCATTGCTATTGCTAGCTTCATTGGTCTCACCGCTCCCATCACTAGAACTCAAGGACTTTCTGGGCATTTCCCAAATCCCTCTTCCCCTTTCTCCTCCCTCAAATATTCCCAATCCAGAACCACCTTCTCTCCCTCCATGGCCACCACCCCAATCCAAGTCTCTGCTTCTTCTTCTTCTTCATCATCATCGCCCACCATTGATGAAAAGAAAGGTTCAGGCTTTTCCGGGATTGTGGGAGCCGATGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGGAGGAGCATCCGGGTTGTGAAATATATGGGCAAACAGTCACCGTTGATCACCATGAGGAGTTGATCAAGGTGGGTATCAATCCATGCTTGAAGGGGACCAAAACGGACCATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCCGATTATCCCGGTGATGTTCGAGTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTGTTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCATGTGATGAGGACACTCCAGTAGTGCCAATAGGAAGGAGCCCCAGGACCGACGTCCTTCTTAATGCAGAAAAAGTAGTGCTGGAGTTTGGTGGTGTTGTTCTTAGATTGGCAGGGCTTTACAAAGCAGATAGAGGTGCCCATGTTTATTGGTTATCGAAGGGGACTGTAGACGCAAATCCAGATCACGTTCTGAATCTCATACATTACGAGGATGCAGCTTCCCTATCTGTTGCAATCTTAGAGAAGCAATTACGTAACCGGATTCTCTTGGGTTGTGACAATCATCCATTGTCCAGGAAAGAAGTGATGGACTTGGTTAATAAAAGTGGGAAATTTACCAAAGTGTTTGAGAGCTTTACAGGAACTACTGATCCATTGGGTAAGCGATTAAACAACTCAAAAACTCGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

345

Amino Acids

37.34

Weight (kDa)

6.32

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24340
fragaria_vesca	FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220
malus_domestica	MD13G1113200.v1.1 MD16G1112300.v1.1
prunus_persica	Prupe.1G232900_v2.0.a1
pyrus_communis	pycom13g09860
rosa_chinensis	RchiOBHm_Chr4g0431061
rosa_laevigata	RLG00000006928 RLG00000016399
rosa_multiflora	Rmu_co8265599.1_g000001 Rmu_sc0003592.1_g000008 Rmu_sc0010203.1_g000008 Rmu_sc0041255.1_g000001 Rmu_sc0043112.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114870 Rroxscaffold_2G00148110 Rroxscaffold_5G00372680
rosa_rugosa	Rorug02G0035800 Rorug02G0035800 Rorug02G0035900 Rorug02G0035900 Rorug04G0247900
rosa_samantha	Rh2DG080900 Rh2DG081100 Rh4AG304600 Rh4BG311800 Rh4CG328100 Rh4DG308300
rosa_wichuraiana	Rw4G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	738
AciI	CCGC	2 cut(s)	39, 307
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	2 cut(s)	3, 147
AcsI	RAATTY	1 cut(s)	902
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	400, 499
AjnI	CCWGG	2 cut(s)	611, 863
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AloI	GAACNNNNNNTCC	2 cut(s)	925, 957
AluBI	AGCT	4 cut(s)	24, 537, 788, 924
AluI	AGCT	4 cut(s)	24, 537, 788, 924
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	38, 172
AlwI	GGATC	1 cut(s)	935
AoxI	GGCC	3 cut(s)	3, 147, 269
ApeKI	GCWGC	2 cut(s)	491, 785
ApoI	RAATTY	1 cut(s)	902
AspS9I	GGNCC	4 cut(s)	269, 405, 415, 615
AsuC2I	CCSGG	4 cut(s)	235, 273, 321, 474
AsuHPI	GGTGA	5 cut(s)	28, 340, 350, 488, 521
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	3 cut(s)	405, 415, 615
BaeGI	GKGCMC	1 cut(s)	709
BalI	TGGCCA	2 cut(s)	5, 149
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	478, 797
BccI	CCATC	3 cut(s)	53, 460, 871
BciT130I	CCWGG	2 cut(s)	613, 865
BclI	TGATCA	2 cut(s)	355, 372
BcnI	CCSGG	4 cut(s)	235, 273, 321, 474
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	3 cut(s)	21, 51, 456
BfmI	CTRYAG	1 cut(s)	735
BisI	GCNGC	2 cut(s)	492, 786
BlsI	GCNGC	2 cut(s)	493, 787
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	6 cut(s)	235, 273, 321, 474, 613, 865
Bme18I	GGWCC	3 cut(s)	405, 415, 615
BmgT120I	GGNCC	4 cut(s)	269, 405, 415, 615
BmiI	GGNNCC	5 cut(s)	247, 406, 608, 706, 996
BmrFI	CCNGG	6 cut(s)	235, 273, 321, 474, 613, 865
BmrI	ACTGGG	1 cut(s)	1002
BmsI	GCATC	2 cut(s)	325, 772
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	1002
BoxI	GACNNNNGTC	2 cut(s)	564, 620
BpmI	CTGGAG	2 cut(s)	570, 671
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	4 cut(s)	235, 273, 321, 474
BsaAI	YACGTR	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	144, 611
BsaWI	WCCGGW	1 cut(s)	828
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	3 cut(s)	506, 587, 1008
Bse3DI	GCAATG	2 cut(s)	9, 562
BseBI	CCWGG	2 cut(s)	613, 865
BseDI	CCNNGG	2 cut(s)	144, 611
BseGI	GGATG	3 cut(s)	316, 787, 853
BseMI	GCAATG	2 cut(s)	9, 562
BseNI	ACTGG	3 cut(s)	506, 587, 1008
BseRI	GAGGAG	3 cut(s)	91, 326, 380
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	478, 797
BsgI	GTGCAG	2 cut(s)	525, 999
BshFI	GGCC	3 cut(s)	5, 149, 271
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	5 cut(s)	234, 272, 320, 474, 829
BslFI	GGGAC	2 cut(s)	418, 745
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	2 cut(s)	418, 745
BsnI	GGCC	3 cut(s)	5, 149, 271
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	448, 611, 709
Bsp143I	GATC	4 cut(s)	355, 372, 751, 940
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	39, 307
BspANI	GGCC	3 cut(s)	5, 149, 271
BspLI	GGNNCC	5 cut(s)	247, 406, 608, 706, 996
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	935
BspT107I	GGYRCC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	41
BsrDI	GCAATG	2 cut(s)	9, 562
BsrI	ACTGG	3 cut(s)	506, 587, 1008
BssECI	CCNNGG	2 cut(s)	144, 611
BssMI	GATC	4 cut(s)	355, 372, 751, 940
BssNI	GRCGYC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	2 cut(s)	613, 865
Bst4CI	ACNGT	5 cut(s)	346, 352, 546, 566, 736
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	671, 808
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	316, 787, 853
BstKTI	GATC	4 cut(s)	358, 375, 754, 943
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	4 cut(s)	355, 372, 751, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 313
BstNI	CCWGG	2 cut(s)	613, 865
BstPAI	GACNNNNGTC	2 cut(s)	564, 620
BstSCI	CCNGG	6 cut(s)	233, 271, 319, 472, 611, 863
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	709
BstSNI	TACGTA	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	478, 797
BsuRI	GGCC	3 cut(s)	5, 149, 271
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	316, 787, 853
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	269, 405, 415, 615
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	5 cut(s)	145, 362, 393, 570, 710
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	671, 808
DpnI	GATC	4 cut(s)	357, 374, 753, 942
DpnII	GATC	4 cut(s)	355, 372, 751, 940
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	611
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	405, 415, 615
EcoRII	CCWGG	2 cut(s)	611, 863
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	148, 365, 396, 573, 713
FaqI	GGGAC	2 cut(s)	418, 745
FatI	CATG	5 cut(s)	144, 361, 392, 569, 709
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	2 cut(s)	355, 372
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	2 cut(s)	492, 786
FokI	GGATG	3 cut(s)	303, 794, 840
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	2 cut(s)	492, 786
FspBI	CTAG	3 cut(s)	21, 51, 456
GluI	GCNGC	2 cut(s)	492, 786
GsuI	CTGGAG	2 cut(s)	570, 671
HaeIII	GGCC	3 cut(s)	5, 149, 271
HapII	CCGG	5 cut(s)	234, 272, 320, 474, 829
HgaI	GACGC	1 cut(s)	749
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	5 cut(s)	148, 365, 396, 573, 713
HinfI	GANTC	3 cut(s)	763, 832, 1030
HpaII	CCGG	5 cut(s)	234, 272, 320, 474, 829
HphI	GGTGA	5 cut(s)	28, 340, 350, 488, 521
Hpy166II	GTNNAC	2 cut(s)	528, 739
Hpy188I	TCNGA	3 cut(s)	466, 762, 1037
Hpy188III	TCNNGA	3 cut(s)	123, 456, 749
Hpy8I	GTNNAC	2 cut(s)	528, 739
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	6 cut(s)	142, 394, 506, 597, 635, 721
HpyCH4III	ACNGT	5 cut(s)	346, 352, 546, 566, 736
HpyCH4IV	ACGT	3 cut(s)	621, 756, 823
HpyCH4V	TGCA	8 cut(s)	296, 494, 542, 555, 635, 785, 803, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 313
HpyF3I	CTNAG	2 cut(s)	671, 808
HpySE526I	ACGT	3 cut(s)	621, 756, 823
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	5 cut(s)	148, 365, 396, 573, 713
Ksp22I	TGATCA	2 cut(s)	355, 372
Kzo9I	GATC	4 cut(s)	355, 372, 751, 940
LmnI	GCTCC	5 cut(s)	46, 245, 313, 451, 606
Lsp1109I	GCAGC	2 cut(s)	478, 797
LweI	GCATC	2 cut(s)	325, 772
MaeI	CTAG	3 cut(s)	21, 51, 456
MaeII	ACGT	3 cut(s)	621, 756, 823
MaeIII	GTNAC	3 cut(s)	346, 824, 845
MalI	GATC	4 cut(s)	357, 374, 753, 942
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	4 cut(s)	355, 372, 751, 940
MboII	GAAGA	5 cut(s)	81, 168, 171, 174, 177
MhlI	GDGCHC	3 cut(s)	448, 611, 709
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	3 cut(s)	818, 902, 1019
MluNI	TGGCCA	2 cut(s)	5, 149
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	3 cut(s)	630, 888, 959
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	5 cut(s)	234, 272, 320, 474, 829
MspR9I	CCNGG	6 cut(s)	235, 273, 321, 474, 613, 865
MvaI	CCWGG	2 cut(s)	613, 865
MwoI	GCNNNNNNNGC	2 cut(s)	11, 313
NciI	CCSGG	4 cut(s)	235, 273, 321, 474
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	355, 372, 751, 940
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	148, 365, 396, 573, 713
NlaIV	GGNNCC	5 cut(s)	247, 406, 608, 706, 996
NmuCI	GTSAC	2 cut(s)	346, 845
PfeI	GAWTC	2 cut(s)	763, 832
PfoI	TCCNGGA	2 cut(s)	233, 863
PkrI	GCNGC	2 cut(s)	493, 787
Ppu21I	YACGTR	1 cut(s)	824
PshAI	GACNNNNGTC	2 cut(s)	564, 620
Psp6I	CCWGG	2 cut(s)	611, 863
PspGI	CCWGG	2 cut(s)	611, 863
PspN4I	GGNNCC	5 cut(s)	247, 406, 608, 706, 996
PspPI	GGNCC	4 cut(s)	269, 405, 415, 615
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	630, 888, 959
SatI	GCNGC	2 cut(s)	492, 786
Sau3AI	GATC	4 cut(s)	355, 372, 751, 940
Sau96I	GGNCC	4 cut(s)	269, 405, 415, 615
ScaI	AGTACT	1 cut(s)	279
ScrFI	CCNGG	6 cut(s)	235, 273, 321, 474, 613, 865
SduI	GDGCHC	3 cut(s)	448, 611, 709
SfaNI	GCATC	2 cut(s)	325, 772
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	3 cut(s)	405, 415, 615
SmlI	CTYRAG	2 cut(s)	57, 1025
SmoI	CTYRAG	2 cut(s)	57, 1025
SnaBI	TACGTA	1 cut(s)	824
Sse9I	AATT	3 cut(s)	818, 902, 1019
SsiI	CCGC	2 cut(s)	39, 307
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	3 cut(s)	21, 51, 456
StyD4I	CCNGG	6 cut(s)	233, 271, 319, 472, 611, 863
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	346, 352, 546, 566, 736
TaiI	ACGT	3 cut(s)	624, 759, 826
TaqI	TCGA	2 cut(s)	484, 725
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	3 cut(s)	818, 902, 1019
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	763, 832
Tru1I	TTAA	3 cut(s)	630, 888, 959
Tru9I	TTAA	3 cut(s)	630, 888, 959
TseFI	GTSAC	2 cut(s)	346, 845
TseI	GCWGC	2 cut(s)	491, 785
Tsp45I	GTSAC	2 cut(s)	346, 845
TspDTI	ATGAA	3 cut(s)	16, 177, 225
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	3 cut(s)	405, 415, 615
XapI	RAATTY	1 cut(s)	902
XbaI	TCTAGA	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	3 cut(s)	21, 51, 456
ZraI	GACGTC	1 cut(s)	622
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.