Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003028

Physical Location & Seq

Genomic Coordinates Forward (+)

55398784 .. 55406183

Gene Structure 7400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGGGTCTTCACGGTTCTTCAAGAGGTTTAGCGGCCTCTACAAACCCAATGCCAGAATCCAACCATACCCATCTGCCTACGTCCCCACAAGAGCCCTATCACACTCCAAGCTTTTCAGCAATGGCGACAATTCTGTGCTTCCGGTTCTCATAGTCGGTGCAGGACCTGTGGGTCTCGTTCTTTCTATACTCCTAACAAAGCTAGGGGTCAAATGTGCGGTTTTGGAGAAAAGTACAAGTTTCTCCAGACATCCACAGGCACACTTCATTAACAATCGGTCAATGGAGGTATTTCGCAAATTGGATGGCCTGGCAGAGGAGATCCAGAGGTCTCAACCACCAGTTGATTTGTGGAGAAAGTTTATATATTGCACTTCGCTCTCTGGTTCCATTCTTGGCTCAGTAGATCATATGCAACCTCAAGATTTTGAGCAAGTTGTCAGCCCGGTCTCTGTTGCACACTTCTCTCAGTACAAACTGAATGCATTACTACTTAAGCAGCTTGAAAATCTCAGCTTCAAGTATTGTACCCCTGAAGGGTTGAAAGGCCTTGACCATGAACCCCTTGGGGCAAGGCAAATATTGATGGGCCATGAGTGTGTTTCCATCAATGCCAGTGATGATATTATTTCCGTGACTGCATCTTTTCTCAAGGATGGGAAACATATGGAGAGGAATATCAGATGCAATATGATTGTAGGCACAGATGGTGCTGGAAGTACTGTACGTAAGCTGGCTGGTATAGATATGAGAGGTGAAAAGGACTTGCAGAAGCTTGTGAGTGTCCATTTCTTGAGCAGAGGCCTTGGAAATTACTTGCTCAGTGAGAGACCTGGCATGCTGTTTTTTATCTTCAATACTGAAGCTATAGGGGTCCTTGTTGCACATGATCTCAAGCAAGGGGAATTTGTATTGCAGATACCATTTTATCCACCCCAGCAAAACCTTGAAGATTTCAGTGCCAAGACATGTGAGAGGATGATCTTCAAATTGGTAGGTCGAGAGCTTGGAGACATAAATGTGATTGACATAAAACCTTGGGTGATGCATGCTGAAGTTGCCGAGAAGTTTCTAAGTAGTCGAAACCGTGTGATTCTTGCTGGTGATGCTGCTCATCGATTCCCTCCTGCTGGTGGATTTGGTATGAATACCGGAATTCAGGATTCTCATAACCTTGCCTGGAAGATAGCTTCTGTAATTGCCATTTTCAATACAACTCTTAGTATTCAGAACTTCAAAGCAGCCATGGCTGTTCCTGGTGCACTTGGTCTTGATCCAACTATTGCAAACTCGGTACATCGAGTAATAAATAAGGGGGTTGGGTCCATTTTACCATCTGGACTACAGAGCGCCATTTTGGATGGAATTTTCACCTTAGGTCGTGCACAGTTATCAGAAACTCTTTTGAATGAAAACAACCCACTTGGAGCTTTAAGGCTTGCTAATCTGAGATGCATATTTGAAGAAGGAAAGAGTCTCCAGCTCCAGTTCCCGGCAGAAGATCTTGGTTTCAGGTACCTAGAAGGCGCACTTGTTCCTGACCGTGATGGTGCACTGGGTGGCCCAGATGGACCTACTGGTCGCCGGAGGGACTATGTTCCTACTGCAGATCCAGGTTCAAGGCTTCCTCACATGAATGTGAGGATATTGTCAAATTCATCGAGTAAGGCAACTATTTCTACACTGGATCTTTTATCTGGAGACAAAATTGAGTTTCTCCTTATCATAGCACCAATAGAGCCATCCTACCATCTTGCTCATGCTGCATTGAAGGTGGCTGAGGAATTCAAAGTTTCTGCAAGGGTGTGCGTGTTGTGGCCTGCTGGTAGTGCTAAAGGAGTTGAGGTAGGTAGTAAGGCATCATTGAAACCGTGGGAGAATTACATAGATGTTATGGAAGTTAAAAAGTCATCAGATGCTTCGTCATGGTGGGACATCTGTCAAATGACTGATAAAGGAGCCATCCTAGTTCGGCCTGATGAGCATGTTGCTTGGCGTCTGAAGTCTGGAGTTGTTGGGGACCCTATGAGGGAAATGAGAAGGGCTTTTTCTGCTGCCCTAGGCTTGAAGTCACATATTAAAGACCAAGAAGCTGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

700

Amino Acids

76.74

Weight (kDa)

8.66

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	48 - 400	4.6e-61	FAD binding domain
Rng_hyd_C	PF21274	618 - 686	3.5e-07	Aromatic-ring hydroxylase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24340
fragaria_vesca	FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220
malus_domestica	MD13G1113200.v1.1 MD16G1112300.v1.1
prunus_persica	Prupe.1G232900_v2.0.a1
pyrus_communis	pycom13g09860
rosa_chinensis	RchiOBHm_Chr4g0431061
rosa_laevigata	RLG00000006928 RLG00000016399
rosa_multiflora	Rmu_co8265599.1_g000001 Rmu_sc0003592.1_g000008 Rmu_sc0010203.1_g000008 Rmu_sc0041255.1_g000001 Rmu_sc0043112.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114870 Rroxscaffold_2G00148110 Rroxscaffold_5G00372680
rosa_rugosa	Rorug02G0035800 Rorug02G0035800 Rorug02G0035900 Rorug02G0035900 Rorug04G0247900
rosa_samantha	Rh2DG080900 Rh2DG081100 Rh4AG304600 Rh4BG311800 Rh4CG328100 Rh4DG308300
rosa_wichuraiana	Rw4G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	171, 1578
Acc65I	GGTACC	1 cut(s)	1515
AccB1I	GGYRCC	1 cut(s)	1515
AciI	CCGC	2 cut(s)	33, 218
AclWI	GGATC	4 cut(s)	316, 1268, 1604, 1695
AcsI	RAATTY	5 cut(s)	905, 1155, 1365, 1654, 1784
AcuI	CTGAAG	4 cut(s)	555, 882, 1074, 2021
AcyI	GRCGYC	1 cut(s)	1996
AdeI	CACNNNGTG	1 cut(s)	1559
AfaI	GTAC	7 cut(s)	235, 473, 529, 721, 726, 1296, 1517
AfiI	CCNNNNNNNGG	6 cut(s)	316, 537, 1130, 1133, 1492, 2029
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	968
AjnI	CCWGG	5 cut(s)	309, 832, 1178, 1255, 1612
Alw21I	GWGCWC	3 cut(s)	1264, 1387, 1555
Alw26I	GTCTC	7 cut(s)	179, 336, 454, 823, 1005, 1481, 1695
Alw44I	GTGCAC	3 cut(s)	1260, 1383, 1551
AlwI	GGATC	4 cut(s)	316, 1268, 1604, 1695
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	8 cut(s)	34, 307, 547, 589, 802, 1561, 1817, 1973
ApaLI	GTGCAC	3 cut(s)	1260, 1383, 1551
ApeKI	GCWGC	5 cut(s)	499, 1109, 1241, 1763, 2054
ApoI	RAATTY	5 cut(s)	905, 1155, 1365, 1654, 1784
Asp718I	GGTACC	1 cut(s)	1515
AspA2I	CCTAGG	1 cut(s)	2059
AspLEI	GCGC	2 cut(s)	1352, 1529
AspS9I	GGNCC	7 cut(s)	164, 589, 874, 1323, 1562, 1571, 2020
AsuC2I	CCSGG	2 cut(s)	446, 1493
AsuHPI	GGTGA	4 cut(s)	767, 1054, 1115, 1363
AvaII	GGWCC	5 cut(s)	164, 874, 1323, 1571, 2020
AvrII	CCTAGG	1 cut(s)	2059
AxyI	CCTNAGG	1 cut(s)	1375
BaeGI	GKGCMC	3 cut(s)	1264, 1387, 1555
BanI	GGYRCC	1 cut(s)	1515
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	3 cut(s)	1264, 1387, 1555
BbvCI	CCTCAGC	1 cut(s)	1779
BbvI	GCAGC	5 cut(s)	511, 1096, 1253, 1750, 2041
BciT130I	CCWGG	5 cut(s)	311, 834, 1180, 1257, 1614
BclI	TGATCA	1 cut(s)	2095
BcnI	CCSGG	2 cut(s)	446, 1493
BcoDI	GTCTC	7 cut(s)	179, 336, 454, 823, 1005, 1481, 1695
BfaI	CTAG	4 cut(s)	203, 1520, 1967, 2060
BfmI	CTRYAG	3 cut(s)	867, 1343, 1605
BfoI	RGCGCY	1 cut(s)	1353
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	1501
BisI	GCNGC	6 cut(s)	34, 500, 1110, 1242, 1764, 2055
BlnI	CCTAGG	1 cut(s)	2059
BlsI	GCNGC	6 cut(s)	35, 501, 1111, 1243, 1765, 2056
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	7 cut(s)	311, 446, 834, 1180, 1257, 1493, 1614
Bme18I	GGWCC	5 cut(s)	164, 874, 1323, 1571, 2020
BmgT120I	GGNCC	7 cut(s)	164, 589, 874, 1323, 1562, 1571, 2020
BmiI	GGNNCC	7 cut(s)	388, 875, 1324, 1517, 1960, 2021, 2022
BmrFI	CCNGG	7 cut(s)	311, 446, 834, 1180, 1257, 1493, 1614
BmrI	ACTGGG	1 cut(s)	1565
BmsI	GCATC	7 cut(s)	650, 674, 1035, 1096, 1442, 1868, 1906
BmuI	ACTGGG	1 cut(s)	1565
BoxI	GACNNNNGTC	1 cut(s)	1938
BpmI	CTGGAG	5 cut(s)	229, 1463, 1469, 1719, 2028
Bpu10I	CCTNAGC	1 cut(s)	1779
BpuEI	CTTGAG	4 cut(s)	405, 635, 814, 878
BpuMI	CCSGG	2 cut(s)	446, 1493
Bsa29I	ATCGAT	1 cut(s)	1117
BsaAI	YACGTR	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	1996
BsaI	GGTCTC	4 cut(s)	179, 336, 454, 823
BsaJI	CCNNGG	6 cut(s)	565, 805, 1037, 1245, 1871, 2059
BsaWI	WCCGGW	2 cut(s)	142, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	1830, 1860
Bsc4I	CCNNNNNNNGG	6 cut(s)	316, 537, 1130, 1133, 1492, 2029
Bse1I	ACTGG	6 cut(s)	341, 615, 1486, 1560, 1582, 1689
Bse21I	CCTNAGG	1 cut(s)	1375
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	5 cut(s)	311, 834, 1180, 1257, 1614
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	6 cut(s)	565, 805, 1037, 1245, 1871, 2059
BseGI	GGATG	7 cut(s)	250, 310, 661, 984, 1366, 1742, 1962
BseLI	CCNNNNNNNGG	6 cut(s)	316, 537, 1130, 1133, 1492, 2029
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	6 cut(s)	414, 482, 526, 835, 1439, 1770
BseNI	ACTGG	6 cut(s)	341, 615, 1486, 1560, 1582, 1689
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	3 cut(s)	1264, 1387, 1555
BseXI	GCAGC	5 cut(s)	511, 1096, 1253, 1750, 2041
BseYI	CCCAGC	1 cut(s)	936
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	8 cut(s)	36, 309, 549, 591, 804, 1563, 1819, 1975
BshNI	GGYRCC	1 cut(s)	1515
BshVI	ATCGAT	1 cut(s)	1117
BsiHKAI	GWGCWC	3 cut(s)	1264, 1387, 1555
BsiSI	CCGG	5 cut(s)	143, 446, 1152, 1493, 1585
BslFI	GGGAC	4 cut(s)	68, 1604, 1946, 2033
BslI	CCNNNNNNNGG	6 cut(s)	316, 537, 1130, 1133, 1492, 2029
BsmAI	GTCTC	7 cut(s)	179, 336, 454, 823, 1005, 1481, 1695
BsmFI	GGGAC	4 cut(s)	68, 1604, 1946, 2033
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	8 cut(s)	36, 309, 549, 591, 804, 1563, 1819, 1975
Bso31I	GGTCTC	4 cut(s)	179, 336, 454, 823
Bsp1286I	GDGCHC	4 cut(s)	97, 1264, 1387, 1555
Bsp143I	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
Bsp19I	CCATGG	1 cut(s)	1245
BspACI	CCGC	2 cut(s)	33, 218
BspANI	GGCC	8 cut(s)	36, 309, 549, 591, 804, 1563, 1819, 1975
BspCNI	CTCAG	6 cut(s)	413, 481, 525, 834, 1440, 1771
BspDI	ATCGAT	1 cut(s)	1117
BspLI	GGNNCC	7 cut(s)	388, 875, 1324, 1517, 1960, 2021, 2022
BspMAI	CTGCAG	1 cut(s)	1609
BspPI	GGATC	4 cut(s)	316, 1268, 1604, 1695
BspT107I	GGYRCC	1 cut(s)	1515
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	4 cut(s)	179, 336, 454, 823
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	6 cut(s)	341, 615, 1486, 1560, 1582, 1689
BssECI	CCNNGG	6 cut(s)	565, 805, 1037, 1245, 1871, 2059
BssMI	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
BssNI	GRCGYC	1 cut(s)	1996
BssT1I	CCWWGG	5 cut(s)	565, 805, 1037, 1245, 2059
Bst2UI	CCWGG	5 cut(s)	311, 834, 1180, 1257, 1614
Bst4CI	ACNGT	6 cut(s)	15, 724, 1088, 1389, 1544, 1872
BstACI	GRCGYC	1 cut(s)	1996
BstAFI	CTTAAG	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	5 cut(s)	735, 839, 1050, 1440, 1821
BstDEI	CTNAG	9 cut(s)	400, 468, 512, 821, 1073, 1220, 1375, 1448, 1779
BstDSI	CCRYGG	2 cut(s)	1245, 1871
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	7 cut(s)	250, 310, 661, 984, 1366, 1742, 1962
BstH2I	RGCGCY	1 cut(s)	1353
BstHHI	GCGC	2 cut(s)	1352, 1529
BstKTI	GATC	9 cut(s)	324, 409, 892, 984, 1276, 1504, 1612, 1690, 2098
BstMAI	GTCTC	7 cut(s)	179, 336, 454, 823, 1005, 1481, 1695
BstMBI	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
BstMWI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1247, 1763, 1829, 1981, 2051
BstNI	CCWGG	5 cut(s)	311, 834, 1180, 1257, 1614
BstNSI	RCATGY	4 cut(s)	841, 972, 1052, 1988
BstPAI	GACNNNNGTC	1 cut(s)	1938
BstSCI	CCNGG	7 cut(s)	309, 444, 832, 1178, 1255, 1491, 1612
BstSFI	CTRYAG	3 cut(s)	867, 1343, 1605
BstSLI	GKGCMC	3 cut(s)	1264, 1387, 1555
BstSNI	TACGTA	1 cut(s)	728
BstV1I	GCAGC	5 cut(s)	511, 1096, 1253, 1750, 2041
BstX2I	RGATCY	4 cut(s)	321, 1501, 1609, 1687
BstYI	RGATCY	4 cut(s)	321, 1501, 1609, 1687
Bsu15I	ATCGAT	1 cut(s)	1117
Bsu36I	CCTNAGG	1 cut(s)	1375
BsuRI	GGCC	8 cut(s)	36, 309, 549, 591, 804, 1563, 1819, 1975
BsuTUI	ATCGAT	1 cut(s)	1117
BtgI	CCRYGG	2 cut(s)	1245, 1871
BtsCI	GGATG	7 cut(s)	250, 310, 661, 984, 1366, 1742, 1962
BtsIMutI	CAGTG	5 cut(s)	622, 829, 964, 1553, 1682
Cac8I	GCNNGC	5 cut(s)	735, 839, 1050, 1440, 1821
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	1352, 1529
Cfr13I	GGNCC	7 cut(s)	164, 589, 874, 1323, 1562, 1571, 2020
ClaI	ATCGAT	1 cut(s)	1117
CseI	GACGC	1 cut(s)	1985
Csp6I	GTAC	7 cut(s)	234, 472, 528, 720, 725, 1295, 1516
CviQI	GTAC	7 cut(s)	234, 472, 528, 720, 725, 1295, 1516
DdeI	CTNAG	9 cut(s)	400, 468, 512, 821, 1073, 1220, 1375, 1448, 1779
DpnI	GATC	9 cut(s)	323, 408, 891, 983, 1275, 1503, 1611, 1689, 2097
DpnII	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
DraIII	CACNNNGTG	1 cut(s)	1559
DrdI	GACNNNNNNGTC	2 cut(s)	171, 1578
DseDI	GACNNNNNNGTC	2 cut(s)	171, 1578
Eco105I	TACGTA	1 cut(s)	728
Eco130I	CCWWGG	5 cut(s)	565, 805, 1037, 1245, 2059
Eco147I	AGGCCT	2 cut(s)	549, 804
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	4 cut(s)	179, 336, 454, 823
Eco47I	GGWCC	5 cut(s)	164, 874, 1323, 1571, 2020
Eco57I	CTGAAG	4 cut(s)	555, 882, 1074, 2021
Eco81I	CCTNAGG	1 cut(s)	1375
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	3 cut(s)	164, 874, 2020
EcoRI	GAATTC	2 cut(s)	1155, 1784
EcoRII	CCWGG	5 cut(s)	309, 832, 1178, 1255, 1612
EcoT14I	CCWWGG	5 cut(s)	565, 805, 1037, 1245, 2059
EcoT22I	ATGCAT	3 cut(s)	487, 1050, 1457
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	5 cut(s)	565, 805, 1037, 1245, 2059
FalI	AAGNNNNNCTT	2 cut(s)	1515, 1547
FaqI	GGGAC	4 cut(s)	68, 1604, 1946, 2033
FauNDI	CATATG	2 cut(s)	411, 666
FbaI	TGATCA	1 cut(s)	2095
Fnu4HI	GCNGC	6 cut(s)	34, 500, 1110, 1242, 1764, 2055
FokI	GGATG	7 cut(s)	237, 317, 668, 991, 1373, 1729, 1949
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	6 cut(s)	34, 500, 1110, 1242, 1764, 2055
FspBI	CTAG	4 cut(s)	203, 1520, 1967, 2060
GlaI	GCGC	2 cut(s)	1351, 1528
GluI	GCNGC	6 cut(s)	34, 500, 1110, 1242, 1764, 2055
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	5 cut(s)	229, 1463, 1469, 1719, 2028
HaeII	RGCGCY	1 cut(s)	1353
HaeIII	GGCC	8 cut(s)	36, 309, 549, 591, 804, 1563, 1819, 1975
HapII	CCGG	5 cut(s)	143, 446, 1152, 1493, 1585
HgaI	GACGC	1 cut(s)	1985
HhaI	GCGC	2 cut(s)	1352, 1529
Hin1I	GRCGYC	1 cut(s)	1996
Hin6I	GCGC	2 cut(s)	1350, 1527
HinP1I	GCGC	2 cut(s)	1350, 1527
HindIII	AAGCTT	2 cut(s)	110, 773
HinfI	GANTC	5 cut(s)	57, 1093, 1119, 1163, 1474
HpaII	CCGG	5 cut(s)	143, 446, 1152, 1493, 1585
HphI	GGTGA	4 cut(s)	767, 1054, 1115, 1363
Hpy166II	GTNNAC	3 cut(s)	1262, 1385, 1553
Hpy188I	TCNGA	6 cut(s)	683, 1230, 1396, 1449, 1915, 2001
Hpy8I	GTNNAC	3 cut(s)	1262, 1385, 1553
HpyAV	CCTTC	5 cut(s)	530, 1460, 1517, 1765, 2034
HpyCH4III	ACNGT	6 cut(s)	15, 724, 1088, 1389, 1544, 1872
HpyCH4IV	ACGT	2 cut(s)	81, 727
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1247, 1763, 1829, 1981, 2051
HpyF3I	CTNAG	9 cut(s)	400, 468, 512, 821, 1073, 1220, 1375, 1448, 1779
HpySE526I	ACGT	2 cut(s)	81, 727
Hsp92I	GRCGYC	1 cut(s)	1996
HspAI	GCGC	2 cut(s)	1350, 1527
KflI	GGGWCCC	1 cut(s)	2020
KpnI	GGTACC	1 cut(s)	1519
Ksp22I	TGATCA	1 cut(s)	2095
Kzo9I	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
LmnI	GCTCC	3 cut(s)	1427, 1488, 1958
Lsp1109I	GCAGC	5 cut(s)	511, 1096, 1253, 1750, 2041
LweI	GCATC	7 cut(s)	650, 674, 1035, 1096, 1442, 1868, 1906
MaeI	CTAG	4 cut(s)	203, 1520, 1967, 2060
MaeII	ACGT	2 cut(s)	81, 727
MaeIII	GTNAC	2 cut(s)	634, 2070
MalI	GATC	9 cut(s)	323, 408, 891, 983, 1275, 1503, 1611, 1689, 2097
MboI	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
MboII	GAAGA	7 cut(s)	10, 844, 962, 976, 1195, 1475, 1511
MflI	RGATCY	4 cut(s)	321, 1501, 1609, 1687
MhlI	GDGCHC	4 cut(s)	97, 1264, 1387, 1555
MlyI	GAGTC	1 cut(s)	1483
MmeI	TCCRAC	2 cut(s)	85, 1301
Mph1103I	ATGCAT	3 cut(s)	487, 1050, 1457
MseI	TTAA	5 cut(s)	270, 495, 1433, 1902, 2079
MslI	CAYNNNNRTG	4 cut(s)	597, 1019, 1635, 1637
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	5 cut(s)	143, 446, 1152, 1493, 1585
MspR9I	CCNGG	7 cut(s)	311, 446, 834, 1180, 1257, 1493, 1614
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	5 cut(s)	311, 834, 1180, 1257, 1614
MwoI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1247, 1763, 1829, 1981, 2051
NciI	CCSGG	2 cut(s)	446, 1493
NcoI	CCATGG	1 cut(s)	1245
NdeI	CATATG	2 cut(s)	411, 666
NdeII	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
NlaIV	GGNNCC	7 cut(s)	388, 875, 1324, 1517, 1960, 2021, 2022
NmeAIII	GCCGAG	1 cut(s)	1087
NmuCI	GTSAC	2 cut(s)	634, 2070
NsiI	ATGCAT	3 cut(s)	487, 1050, 1457
NspI	RCATGY	4 cut(s)	841, 972, 1052, 1988
PaeI	GCATGC	2 cut(s)	841, 1052
PceI	AGGCCT	2 cut(s)	549, 804
PciI	ACATGT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	4 cut(s)	57, 1093, 1119, 1163
PkrI	GCNGC	6 cut(s)	35, 501, 1111, 1243, 1765, 2056
PleI	GAGTC	1 cut(s)	1482
PpsI	GAGTC	1 cut(s)	1482
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	3 cut(s)	164, 874, 2020
PscI	ACATGT	1 cut(s)	968
PshAI	GACNNNNGTC	1 cut(s)	1938
Psp5II	RGGWCCY	3 cut(s)	164, 874, 2020
Psp6I	CCWGG	5 cut(s)	309, 832, 1178, 1255, 1612
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	5 cut(s)	309, 832, 1178, 1255, 1612
PspN4I	GGNNCC	7 cut(s)	388, 875, 1324, 1517, 1960, 2021, 2022
PspPI	GGNCC	7 cut(s)	164, 589, 874, 1323, 1562, 1571, 2020
PspPPI	RGGWCCY	3 cut(s)	164, 874, 2020
PstI	CTGCAG	1 cut(s)	1609
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	4 cut(s)	321, 1501, 1609, 1687
RsaI	GTAC	7 cut(s)	235, 473, 529, 721, 726, 1296, 1517
RsaNI	GTAC	7 cut(s)	234, 472, 528, 720, 725, 1295, 1516
RseI	CAYNNNNRTG	4 cut(s)	597, 1019, 1635, 1637
SaqAI	TTAA	5 cut(s)	270, 495, 1433, 1902, 2079
SatI	GCNGC	6 cut(s)	34, 500, 1110, 1242, 1764, 2055
Sau3AI	GATC	9 cut(s)	321, 406, 889, 981, 1273, 1501, 1609, 1687, 2095
Sau96I	GGNCC	7 cut(s)	164, 589, 874, 1323, 1562, 1571, 2020
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	1 cut(s)	1483
ScrFI	CCNGG	7 cut(s)	311, 446, 834, 1180, 1257, 1493, 1614
SduI	GDGCHC	4 cut(s)	97, 1264, 1387, 1555
SfaNI	GCATC	7 cut(s)	650, 674, 1035, 1096, 1442, 1868, 1906
SfcI	CTRYAG	3 cut(s)	867, 1343, 1605
SinI	GGWCC	5 cut(s)	164, 874, 1323, 1571, 2020
SmiMI	CAYNNNNRTG	4 cut(s)	597, 1019, 1635, 1637
SmlI	CTYRAG	5 cut(s)	420, 494, 650, 793, 893
SmoI	CTYRAG	5 cut(s)	420, 494, 650, 793, 893
SnaBI	TACGTA	1 cut(s)	728
SphI	GCATGC	2 cut(s)	841, 1052
SseBI	AGGCCT	2 cut(s)	549, 804
SsiI	CCGC	2 cut(s)	33, 218
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	4 cut(s)	203, 1520, 1967, 2060
StuI	AGGCCT	2 cut(s)	549, 804
StyD4I	CCNGG	7 cut(s)	309, 444, 832, 1178, 1255, 1491, 1612
StyI	CCWWGG	5 cut(s)	565, 805, 1037, 1245, 2059
TaaI	ACNGT	6 cut(s)	15, 724, 1088, 1389, 1544, 1872
TaiI	ACGT	2 cut(s)	84, 730
TaqI	TCGA	5 cut(s)	1000, 1081, 1117, 1300, 1661
TaqII	GACCGA	1 cut(s)	267
TatI	WGTACW	3 cut(s)	233, 471, 719
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	4 cut(s)	57, 1093, 1119, 1163
Tru1I	TTAA	5 cut(s)	270, 495, 1433, 1902, 2079
Tru9I	TTAA	5 cut(s)	270, 495, 1433, 1902, 2079
TscAI	CASTG	5 cut(s)	622, 829, 964, 1560, 1689
TseFI	GTSAC	2 cut(s)	634, 2070
TseI	GCWGC	5 cut(s)	499, 1109, 1241, 1763, 2054
Tsp45I	GTSAC	2 cut(s)	634, 2070
TspDTI	ATGAA	6 cut(s)	256, 573, 1160, 1425, 1647, 1649
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	5 cut(s)	622, 829, 964, 1560, 1689
Vha464I	CTTAAG	1 cut(s)	494
VneI	GTGCAC	3 cut(s)	1260, 1383, 1551
VpaK11BI	GGWCC	5 cut(s)	164, 874, 1323, 1571, 2020
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	5 cut(s)	905, 1155, 1365, 1654, 1784
XceI	RCATGY	4 cut(s)	841, 972, 1052, 1988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	348, 563
XmaJI	CCTAGG	1 cut(s)	2059
XspI	CTAG	4 cut(s)	203, 1520, 1967, 2060
ZrmI	AGTACT	1 cut(s)	721
Zsp2I	ATGCAT	3 cut(s)	487, 1050, 1457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.