Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043112.1

Orthogroup ID

OG0003028

Physical Location & Seq

Genomic Coordinates Reverse (-)

237 .. 2175

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043112.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgatcttcaaattggtaggtcgagagcttggagacataaatgtgattgacataaaaccctgggtgatgcatgctgaagttgccgagaagtttctaagtagtcgaaaccgtgtgattcttgctggtgatgctgctcatcgattccctcctgctggtggatttggtatgaataccggaattcaggattctcataaccttgcctggaagatagcttctgtagtaaagggtattgcaccaccttcaatacttaatacttatgaaacagaacgtaggccgattgccattttcaatacaactcttagtattcagaacttcaaagcagccatggctgttcctggtgcacttggtcttgatccaactattgcaaactcggtacatcgagtaataaataagggggttgggtccattttaccatctggactacagagcgccattttggatggaattttcaccttaggtcgtgcacagttatcagaaactcttttgaatgaaaacaacccacttggagctttaaggcttgctaatctgagatgcatatttgaagaaggaaagagtctccagctccagttcccggcagaagatattggtttcaggtacctagaaggcgcacttgttcctgaccatgatggtgcactgggtggcccagatggacctactggtcgccggagggactatgttcctactgcagatccaggttcaaggcttcctcacatgaatgtgaggatattgtcaaattcatcgagtgaggcaactatttctacactggatcttatatctggagacaaaattgagtttctccttatcatagcaccgatagagccatcctaccatcttgctcatgctgcattgaaggtggctgaggaattcaaagtttctgcaagggtgtgtgtgttgtggcctgctggtagtgctaaaggagttgaggtaggtagtaaggcatcattgaaaccgtgggagaattacatagatgttatggaagttaaaaagtcatcagatgcttcgtcatggtgggacatctgtcaaatgactgataaaggagccatcctagttcggcctgatgagcatgttgcttggcgtctgaagtctggagttgttggggaccctatgagggaaatgagaagggctttttctgctgccctaggcttgaagtcacatattaaagaccaagaagctgatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

393

Amino Acids

42.63

Weight (kDa)

6.61

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24340
fragaria_vesca	FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220
malus_domestica	MD13G1113200.v1.1 MD16G1112300.v1.1
prunus_persica	Prupe.1G232900_v2.0.a1
pyrus_communis	pycom13g09860
rosa_chinensis	RchiOBHm_Chr4g0431061
rosa_laevigata	RLG00000006928 RLG00000016399
rosa_multiflora	Rmu_co8265599.1_g000001 Rmu_sc0003592.1_g000008 Rmu_sc0010203.1_g000008 Rmu_sc0041255.1_g000001 Rmu_sc0043112.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114870 Rroxscaffold_2G00148110 Rroxscaffold_5G00372680
rosa_rugosa	Rorug02G0035800 Rorug02G0035800 Rorug02G0035900 Rorug02G0035900 Rorug04G0247900
rosa_samantha	Rh2DG080900 Rh2DG081100 Rh4AG304600 Rh4BG311800 Rh4CG328100 Rh4DG308300
rosa_wichuraiana	Rw4G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	657
Acc65I	GGTACC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	594
AclWI	GGATC	3 cut(s)	347, 683, 774
AcsI	RAATTY	4 cut(s)	177, 444, 733, 863
AcuI	CTGAAG	2 cut(s)	96, 1100
AcyI	GRCGYC	1 cut(s)	1075
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	375, 596
AfiI	CCNNNNNNNGG	4 cut(s)	152, 155, 571, 1108
AjnI	CCWGG	4 cut(s)	59, 200, 334, 691
AluBI	AGCT	5 cut(s)	28, 212, 509, 562, 1172
AluI	AGCT	5 cut(s)	28, 212, 509, 562, 1172
Alw21I	GWGCWC	3 cut(s)	343, 466, 634
Alw26I	GTCTC	3 cut(s)	27, 560, 774
Alw44I	GTGCAC	3 cut(s)	339, 462, 630
AlwI	GGATC	3 cut(s)	347, 683, 774
AoxI	GGCC	4 cut(s)	272, 640, 896, 1052
ApaLI	GTGCAC	3 cut(s)	339, 462, 630
ApeKI	GCWGC	4 cut(s)	131, 320, 842, 1133
ApoI	RAATTY	4 cut(s)	177, 444, 733, 863
Asp718I	GGTACC	1 cut(s)	594
AspA2I	CCTAGG	1 cut(s)	1138
AspLEI	GCGC	2 cut(s)	431, 608
AspS9I	GGNCC	4 cut(s)	402, 641, 650, 1099
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	76, 137, 442
AvaII	GGWCC	3 cut(s)	402, 650, 1099
AvrII	CCTAGG	1 cut(s)	1138
AxyI	CCTNAGG	1 cut(s)	454
BaeGI	GKGCMC	3 cut(s)	343, 466, 634
BanI	GGYRCC	1 cut(s)	594
Bbv12I	GWGCWC	3 cut(s)	343, 466, 634
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	4 cut(s)	118, 332, 829, 1120
BccI	CCATC	7 cut(s)	421, 434, 620, 641, 829, 837, 1049
BciT130I	CCWGG	4 cut(s)	61, 202, 336, 693
BclI	TGATCA	1 cut(s)	1174
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	27, 560, 774
BfaI	CTAG	3 cut(s)	599, 1046, 1139
BfmI	CTRYAG	3 cut(s)	216, 422, 684
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	4 cut(s)	132, 321, 843, 1134
BlnI	CCTAGG	1 cut(s)	1138
BlsI	GCNGC	4 cut(s)	133, 322, 844, 1135
Bme1390I	CCNGG	5 cut(s)	61, 202, 336, 572, 693
Bme18I	GGWCC	3 cut(s)	402, 650, 1099
BmgT120I	GGNCC	4 cut(s)	402, 641, 650, 1099
BmiI	GGNNCC	5 cut(s)	403, 596, 1039, 1100, 1101
BmrFI	CCNGG	5 cut(s)	61, 202, 336, 572, 693
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	5 cut(s)	57, 118, 521, 947, 985
BmuI	ACTGGG	1 cut(s)	644
BoxI	GACNNNNGTC	1 cut(s)	1017
BpmI	CTGGAG	4 cut(s)	542, 548, 798, 1107
Bpu10I	CCTNAGC	1 cut(s)	858
BpuMI	CCSGG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	1075
BsaJI	CCNNGG	5 cut(s)	59, 60, 324, 950, 1138
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 155, 571, 1108
Bse1I	ACTGG	4 cut(s)	565, 639, 661, 768
Bse21I	CCTNAGG	1 cut(s)	454
BseBI	CCWGG	4 cut(s)	61, 202, 336, 693
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	5 cut(s)	59, 60, 324, 950, 1138
BseGI	GGATG	3 cut(s)	445, 821, 1041
BseLI	CCNNNNNNNGG	4 cut(s)	152, 155, 571, 1108
BseMII	CTCAG	2 cut(s)	518, 849
BseNI	ACTGG	4 cut(s)	565, 639, 661, 768
BseSI	GKGCMC	3 cut(s)	343, 466, 634
BseXI	GCAGC	4 cut(s)	118, 332, 829, 1120
BshFI	GGCC	4 cut(s)	274, 642, 898, 1054
BshNI	GGYRCC	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	139
BsiHKAI	GWGCWC	3 cut(s)	343, 466, 634
BsiSI	CCGG	3 cut(s)	174, 572, 664
BslFI	GGGAC	3 cut(s)	683, 1025, 1112
BslI	CCNNNNNNNGG	4 cut(s)	152, 155, 571, 1108
BsmAI	GTCTC	3 cut(s)	27, 560, 774
BsmFI	GGGAC	3 cut(s)	683, 1025, 1112
BsnI	GGCC	4 cut(s)	274, 642, 898, 1054
Bsp1286I	GDGCHC	3 cut(s)	343, 466, 634
Bsp143I	GATC	5 cut(s)	3, 352, 688, 766, 1174
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	4 cut(s)	274, 642, 898, 1054
BspCNI	CTCAG	2 cut(s)	519, 850
BspDI	ATCGAT	1 cut(s)	139
BspLI	GGNNCC	5 cut(s)	403, 596, 1039, 1100, 1101
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	3 cut(s)	347, 683, 774
BspT107I	GGYRCC	1 cut(s)	594
BsrI	ACTGG	4 cut(s)	565, 639, 661, 768
BssECI	CCNNGG	5 cut(s)	59, 60, 324, 950, 1138
BssMI	GATC	5 cut(s)	3, 352, 688, 766, 1174
BssNI	GRCGYC	1 cut(s)	1075
BssT1I	CCWWGG	2 cut(s)	324, 1138
Bst2UI	CCWGG	4 cut(s)	61, 202, 336, 693
Bst4CI	ACNGT	3 cut(s)	110, 468, 951
BstACI	GRCGYC	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	72, 519, 900
BstDEI	CTNAG	5 cut(s)	95, 299, 454, 527, 858
BstDSI	CCRYGG	2 cut(s)	324, 950
BstF5I	GGATG	3 cut(s)	445, 821, 1041
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	431, 608
BstKTI	GATC	5 cut(s)	6, 355, 691, 769, 1177
BstMAI	GTCTC	3 cut(s)	27, 560, 774
BstMBI	GATC	5 cut(s)	3, 352, 688, 766, 1174
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 128, 326, 842, 908, 1060, 1130
BstNI	CCWGG	4 cut(s)	61, 202, 336, 693
BstNSI	RCATGY	2 cut(s)	74, 1067
BstPAI	GACNNNNGTC	1 cut(s)	1017
BstSCI	CCNGG	5 cut(s)	59, 200, 334, 570, 691
BstSFI	CTRYAG	3 cut(s)	216, 422, 684
BstSLI	GKGCMC	3 cut(s)	343, 466, 634
BstV1I	GCAGC	4 cut(s)	118, 332, 829, 1120
BstX2I	RGATCY	2 cut(s)	688, 766
BstYI	RGATCY	2 cut(s)	688, 766
Bsu15I	ATCGAT	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	454
BsuRI	GGCC	4 cut(s)	274, 642, 898, 1054
BsuTUI	ATCGAT	1 cut(s)	139
BtgI	CCRYGG	2 cut(s)	324, 950
BtsCI	GGATG	3 cut(s)	445, 821, 1041
BtsIMutI	CAGTG	2 cut(s)	632, 761
Cac8I	GCNNGC	3 cut(s)	72, 519, 900
CfoI	GCGC	2 cut(s)	431, 608
Cfr13I	GGNCC	4 cut(s)	402, 641, 650, 1099
ClaI	ATCGAT	1 cut(s)	139
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	2 cut(s)	374, 595
CviAII	CATG	7 cut(s)	71, 325, 623, 712, 839, 1005, 1064
CviQI	GTAC	2 cut(s)	374, 595
DdeI	CTNAG	5 cut(s)	95, 299, 454, 527, 858
DpnI	GATC	5 cut(s)	5, 354, 690, 768, 1176
DpnII	GATC	5 cut(s)	3, 352, 688, 766, 1174
DraIII	CACNNNGTG	1 cut(s)	638
DrdI	GACNNNNNNGTC	1 cut(s)	657
DseDI	GACNNNNNNGTC	1 cut(s)	657
Eco130I	CCWWGG	2 cut(s)	324, 1138
Eco47I	GGWCC	3 cut(s)	402, 650, 1099
Eco57I	CTGAAG	2 cut(s)	96, 1100
Eco81I	CCTNAGG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	1099
EcoRI	GAATTC	2 cut(s)	177, 863
EcoRII	CCWGG	4 cut(s)	59, 200, 334, 691
EcoT14I	CCWWGG	2 cut(s)	324, 1138
EcoT22I	ATGCAT	2 cut(s)	72, 536
ErhI	CCWWGG	2 cut(s)	324, 1138
FaeI	CATG	7 cut(s)	74, 328, 626, 715, 842, 1008, 1067
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	3 cut(s)	683, 1025, 1112
FatI	CATG	7 cut(s)	70, 324, 622, 711, 838, 1004, 1063
FbaI	TGATCA	1 cut(s)	1174
Fnu4HI	GCNGC	4 cut(s)	132, 321, 843, 1134
FokI	GGATG	3 cut(s)	452, 808, 1028
Fsp4HI	GCNGC	4 cut(s)	132, 321, 843, 1134
FspBI	CTAG	3 cut(s)	599, 1046, 1139
GlaI	GCGC	2 cut(s)	430, 607
GluI	GCNGC	4 cut(s)	132, 321, 843, 1134
GsuI	CTGGAG	4 cut(s)	542, 548, 798, 1107
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	274, 642, 898, 1054
HapII	CCGG	3 cut(s)	174, 572, 664
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	2 cut(s)	431, 608
Hin1I	GRCGYC	1 cut(s)	1075
Hin1II	CATG	7 cut(s)	74, 328, 626, 715, 842, 1008, 1067
Hin6I	GCGC	2 cut(s)	429, 606
HinP1I	GCGC	2 cut(s)	429, 606
HinfI	GANTC	4 cut(s)	115, 141, 185, 553
HpaII	CCGG	3 cut(s)	174, 572, 664
HphI	GGTGA	3 cut(s)	76, 137, 442
Hpy166II	GTNNAC	3 cut(s)	341, 464, 632
Hpy188I	TCNGA	5 cut(s)	309, 475, 528, 994, 1080
Hpy188III	TCNNGA	7 cut(s)	23, 182, 350, 417, 617, 777, 1086
Hpy8I	GTNNAC	3 cut(s)	341, 464, 632
HpyAV	CCTTC	5 cut(s)	249, 539, 596, 844, 1113
HpyCH4III	ACNGT	3 cut(s)	110, 468, 951
HpyCH4IV	ACGT	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 128, 326, 842, 908, 1060, 1130
HpyF3I	CTNAG	5 cut(s)	95, 299, 454, 527, 858
HpySE526I	ACGT	1 cut(s)	268
Hsp92I	GRCGYC	1 cut(s)	1075
Hsp92II	CATG	7 cut(s)	74, 328, 626, 715, 842, 1008, 1067
HspAI	GCGC	2 cut(s)	429, 606
KflI	GGGWCCC	1 cut(s)	1099
KpnI	GGTACC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	1174
Kzo9I	GATC	5 cut(s)	3, 352, 688, 766, 1174
LmnI	GCTCC	3 cut(s)	506, 567, 1037
Lsp1109I	GCAGC	4 cut(s)	118, 332, 829, 1120
LweI	GCATC	5 cut(s)	57, 118, 521, 947, 985
MaeI	CTAG	3 cut(s)	599, 1046, 1139
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	1149
MalI	GATC	5 cut(s)	5, 354, 690, 768, 1176
MboI	GATC	5 cut(s)	3, 352, 688, 766, 1174
MboII	GAAGA	3 cut(s)	217, 554, 590
MflI	RGATCY	2 cut(s)	688, 766
MhlI	GDGCHC	3 cut(s)	343, 466, 634
MluCI	AATT	7 cut(s)	11, 177, 444, 733, 786, 863, 958
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	156, 660, 714, 717, 739, 853, 916, 1101
Mph1103I	ATGCAT	2 cut(s)	72, 536
MseI	TTAA	4 cut(s)	249, 512, 981, 1158
MslI	CAYNNNNRTG	4 cut(s)	41, 627, 714, 716
MspI	CCGG	3 cut(s)	174, 572, 664
MspR9I	CCNGG	5 cut(s)	61, 202, 336, 572, 693
MvaI	CCWGG	4 cut(s)	61, 202, 336, 693
MwoI	GCNNNNNNNGC	7 cut(s)	80, 128, 326, 842, 908, 1060, 1130
NciI	CCSGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	5 cut(s)	3, 352, 688, 766, 1174
NlaIII	CATG	7 cut(s)	74, 328, 626, 715, 842, 1008, 1067
NlaIV	GGNNCC	5 cut(s)	403, 596, 1039, 1100, 1101
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	1149
NsiI	ATGCAT	2 cut(s)	72, 536
NspI	RCATGY	2 cut(s)	74, 1067
PaeI	GCATGC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	115, 141, 185
PkrI	GCNGC	4 cut(s)	133, 322, 844, 1135
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PpuMI	RGGWCCY	1 cut(s)	1099
PshAI	GACNNNNGTC	1 cut(s)	1017
Psp5II	RGGWCCY	1 cut(s)	1099
Psp6I	CCWGG	4 cut(s)	59, 200, 334, 691
PspGI	CCWGG	4 cut(s)	59, 200, 334, 691
PspN4I	GGNNCC	5 cut(s)	403, 596, 1039, 1100, 1101
PspPI	GGNCC	4 cut(s)	402, 641, 650, 1099
PspPPI	RGGWCCY	1 cut(s)	1099
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	688, 766
RsaI	GTAC	2 cut(s)	375, 596
RsaNI	GTAC	2 cut(s)	374, 595
RseI	CAYNNNNRTG	4 cut(s)	41, 627, 714, 716
SaqAI	TTAA	4 cut(s)	249, 512, 981, 1158
SatI	GCNGC	4 cut(s)	132, 321, 843, 1134
Sau3AI	GATC	5 cut(s)	3, 352, 688, 766, 1174
Sau96I	GGNCC	4 cut(s)	402, 641, 650, 1099
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	5 cut(s)	61, 202, 336, 572, 693
SduI	GDGCHC	3 cut(s)	343, 466, 634
SfaNI	GCATC	5 cut(s)	57, 118, 521, 947, 985
SfcI	CTRYAG	3 cut(s)	216, 422, 684
SinI	GGWCC	3 cut(s)	402, 650, 1099
SmiMI	CAYNNNNRTG	4 cut(s)	41, 627, 714, 716
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	7 cut(s)	11, 177, 444, 733, 786, 863, 958
SspMI	CTAG	3 cut(s)	599, 1046, 1139
StyD4I	CCNGG	5 cut(s)	59, 200, 334, 570, 691
StyI	CCWWGG	2 cut(s)	324, 1138
TaaI	ACNGT	3 cut(s)	110, 468, 951
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	5 cut(s)	22, 103, 139, 379, 740
TasI	AATT	7 cut(s)	11, 177, 444, 733, 786, 863, 958
TfiI	GAWTC	3 cut(s)	115, 141, 185
Tru1I	TTAA	4 cut(s)	249, 512, 981, 1158
Tru9I	TTAA	4 cut(s)	249, 512, 981, 1158
TscAI	CASTG	2 cut(s)	639, 768
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	4 cut(s)	131, 320, 842, 1133
Tsp45I	GTSAC	1 cut(s)	1149
TspDTI	ATGAA	5 cut(s)	182, 273, 504, 726, 728
TspRI	CASTG	2 cut(s)	639, 768
VneI	GTGCAC	3 cut(s)	339, 462, 630
VpaK11BI	GGWCC	3 cut(s)	402, 650, 1099
XapI	RAATTY	4 cut(s)	177, 444, 733, 863
XceI	RCATGY	2 cut(s)	74, 1067
XmaJI	CCTAGG	1 cut(s)	1138
XspI	CTAG	3 cut(s)	599, 1046, 1139
Zsp2I	ATGCAT	2 cut(s)	72, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.