Rorug02G0035800

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003028
Physical Location & Seq
Reverse (-)
2840526 .. 2843875
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0035800.1

Sequence Viewer

Length: 1314 bp
ATGGTGTTGAAGGAAGAAAAGATGGACAGAAGAAGAATGATACAGCCTCCATTGGTGGATAGCACAGCATGTTTATGCAGAGTTGATGCTGGTCTTAAAACTGTTGCTGGAGCAAAAAAGTATGTCCCTGGGGCAAAGCTTTGTCTGCAACCAGACATTAAAGCATCCATTCATCCAACTAGAAGTAAGCCTGCACGTGGTGAGAGTAGCCGCAATCAATCCCCTCTTCTTCCTGGACTCCCCGATGATCTTGCTATTGCTTGCCTAATTCGGGTCCCAAGAGTGGAGCATCGCAAGCTCCGCCTAGTTTGCAAAAGATGGTACCGTCTTCTGGCTGGCAACTTCTTTTACTCCCTCCGTAAGAGCATTGGCATTGCTGAAGAATGGATATACTTGATTAAAAGAGATCGAGATGGGAAAATATCTTGGCATGCCTTTGACCCTGTATATCAGCTATGGCAGTCCCTTCCTCCTGTTCCTAAGGAATATTCTGAAGCTCTTGGATTTGGTTGTGCTGTACTCGGTGGCTGTCACCTCTATCTGTTTGGAGGAAAGGACCCTCTAAAGGGATCAATGAGACGAGTCATTTTTTACAGTGCCAGGACCAATAAATGGCATCGTGCCCCAGATATGCTTCGCAGACGACATTTTTTTGGCTCGTGTGTTATAAATAACTGCCTCTATGTTGCTGGTGGAGAGAATGAGGGGGTGCATAGGTCCTTGAGATCAGCAGAAGTCTATGATCCCAACAAGAATAGATGGTCCTTCATTTCAGATATGAGCACTGCAATGGTGCCTTTCATCGGGGTTGTCTACGAAGGCAAATGGTTCTTGAAGGGGCTTGGGTCTCATCGACAAGTCCTGAGTGAGGTCTATCAACCAGAAAATGACAGCTGGTACTCTGTGTATGATGGAATGGTTGCAGGCTGGAGGAACCCCAGTGCTTCTTTAAATGGGCATCTCTATGCTTTGGAGTGCAAGGATGGCTGCAAACTCAGAGTTTACGATGAAGCAACTGATTCTTGGAGCAAGCATATCGACAGTAAGATACATTTGGGTAACTCTAGGGCCTTGGAGGCAGCTTCCCTGGTTCCCCTTAACGGTAAACTTTGCATCATCCGAAATAATATGAGTATTTCGCTTGTTGATGTTTCGAAATCAAATGATGCTGGTGGAGCAAGTGCTGAACATCTATGGGAAACTCTAGCAGGCAAAGGGCAGTTCAGGACAATGGTCACAAATCTGTGGTCAAGCCTTGCCGGCAGAAACCGCCTCAAAAGTCACATAGTTCACTGCCAGGTTCTTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

437

Amino Acids

49.22

Weight (kDa)

9.52

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 78 - 114 4e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 142 - 302 6.7e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 151 - 266 1.5e-10 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 156 - 344 1.2e-19 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 189 - 300 2.6e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 214 - 261 3.6e-15 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 2 cut(s) 321, 793
AccB7I CCANNNNNTGG 1 cut(s) 612
AccI GTMKAC 1 cut(s) 813
AciI CCGC 3 cut(s) 211, 301, 1270
AclWI GGATC 2 cut(s) 577, 737
AcuI CTGAAG 2 cut(s) 399, 513
AcvI CACGTG 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 323, 519, 899
AgsI TTSAA 3 cut(s) 10, 835, 1307
AjnI CCWGG 5 cut(s) 127, 232, 599, 1086, 1296
AluBI AGCT 7 cut(s) 139, 298, 454, 497, 894, 1082, 1310
AluI AGCT 7 cut(s) 139, 298, 454, 497, 894, 1082, 1310
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 2 cut(s) 571, 852
AlwI GGATC 2 cut(s) 577, 737
AoxI GGCC 1 cut(s) 1068
ApeKI GCWGC 2 cut(s) 987, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 1232, 1264
Asp718I GGTACC 1 cut(s) 321
AspS9I GGNCC 6 cut(s) 274, 556, 603, 717, 762, 1068
AsuHPI GGTGA 2 cut(s) 212, 524
AsuII TTCGAA 1 cut(s) 1154
AvaII GGWCC 5 cut(s) 274, 556, 603, 717, 762
AxyI CCTNAGG 1 cut(s) 480
BaeGI GKGCMC 1 cut(s) 625
BanI GGYRCC 2 cut(s) 321, 793
BauI CACGAG 1 cut(s) 658
BbrPI CACGTG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 2 cut(s) 974, 1091
BccI CCATC 6 cut(s) 16, 312, 407, 753, 905, 977
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 1018, 1052
BciT130I CCWGG 5 cut(s) 129, 234, 601, 1088, 1298
BcoDI GTCTC 2 cut(s) 571, 852
BfaI CTAG 4 cut(s) 180, 305, 1065, 1205
BglI GCCNNNNNGGC 2 cut(s) 1076, 1260
BisI GCNGC 3 cut(s) 211, 988, 1080
BlsI GCNGC 3 cut(s) 212, 989, 1081
Bme1390I CCNGG 5 cut(s) 129, 234, 601, 1088, 1298
Bme18I GGWCC 5 cut(s) 274, 556, 603, 717, 762
BmgT120I GGNCC 6 cut(s) 274, 556, 603, 717, 762, 1068
BmiI GGNNCC 7 cut(s) 275, 276, 323, 558, 795, 935, 1092
BmrFI CCNGG 5 cut(s) 129, 234, 601, 1088, 1298
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 7 cut(s) 76, 173, 298, 625, 967, 1122, 1156
BmuI ACTGGG 1 cut(s) 933
BoxI GACNNNNGTC 1 cut(s) 1232
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 129, 949
Bpu14I TTCGAA 1 cut(s) 1154
BpuEI CTTGAG 1 cut(s) 742
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 4 cut(s) 127, 128, 1071, 1086
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 1 cut(s) 939
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 2 cut(s) 372, 795
BseBI CCWGG 5 cut(s) 129, 234, 601, 1088, 1298
BseDI CCNNGG 4 cut(s) 127, 128, 1071, 1086
BseGI GGATG 4 cut(s) 164, 172, 988, 1116
BseMI GCAATG 2 cut(s) 372, 795
BseMII CTCAG 2 cut(s) 854, 1009
BseNI ACTGG 1 cut(s) 939
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 2 cut(s) 974, 1091
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 1070
BshNI GGYRCC 2 cut(s) 321, 793
BsiHKAI GWGCWC 1 cut(s) 785
BsiSI CCGG 1 cut(s) 1260
BslFI GGGAC 3 cut(s) 110, 260, 448
BsmAI GTCTC 2 cut(s) 571, 852
BsmBI CGTCTC 1 cut(s) 571
BsmFI GGGAC 3 cut(s) 110, 260, 448
BsnI GGCC 1 cut(s) 1070
Bso31I GGTCTC 1 cut(s) 852
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 625, 785
Bsp143I GATC 5 cut(s) 247, 406, 569, 725, 742
BspACI CCGC 3 cut(s) 211, 301, 1270
BspANI GGCC 1 cut(s) 1070
BspCNI CTCAG 2 cut(s) 855, 1008
BspLI GGNNCC 7 cut(s) 275, 276, 323, 558, 795, 935, 1092
BspPI GGATC 2 cut(s) 577, 737
BspT104I TTCGAA 1 cut(s) 1154
BspT107I GGYRCC 2 cut(s) 321, 793
BspTNI GGTCTC 1 cut(s) 852
BsrDI GCAATG 2 cut(s) 372, 795
BsrFI RCCGGY 1 cut(s) 1259
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 4 cut(s) 127, 128, 1071, 1086
BssMI GATC 5 cut(s) 247, 406, 569, 725, 742
BssSI CACGAG 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 1071
Bst2BI CACGAG 1 cut(s) 658
Bst2UI CCWGG 5 cut(s) 129, 234, 601, 1088, 1298
Bst4CI ACNGT 5 cut(s) 103, 326, 596, 1043, 1103
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 9 cut(s) 192, 262, 296, 337, 432, 925, 1031, 1210, 1261
BstDEI CTNAG 4 cut(s) 480, 863, 995, 1311
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 4 cut(s) 164, 172, 988, 1116
BstKTI GATC 5 cut(s) 250, 409, 572, 728, 745
BstMAI GTCTC 2 cut(s) 571, 852
BstMBI GATC 5 cut(s) 247, 406, 569, 725, 742
BstMWI GCNNNNNNNGC 9 cut(s) 145, 295, 300, 309, 984, 1076, 1175, 1260, 1269
BstNI CCWGG 5 cut(s) 129, 234, 601, 1088, 1298
BstNSI RCATGY 2 cut(s) 72, 434
BstPAI GACNNNNGTC 1 cut(s) 1232
BstSCI CCNGG 5 cut(s) 127, 232, 599, 1086, 1296
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 2 cut(s) 974, 1091
BstV2I GAAGAC 1 cut(s) 320
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 1 cut(s) 1070
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 4 cut(s) 164, 172, 988, 1116
BtsI GCAGTG 2 cut(s) 783, 1291
BtsIMutI CAGTG 4 cut(s) 601, 783, 946, 1291
Cac8I GCNNGC 9 cut(s) 192, 262, 296, 337, 432, 925, 1031, 1210, 1261
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 6 cut(s) 274, 556, 603, 717, 762, 1068
Csp6I GTAC 3 cut(s) 322, 518, 898
CviAII CATG 2 cut(s) 69, 431
CviQI GTAC 3 cut(s) 322, 518, 898
DdeI CTNAG 4 cut(s) 480, 863, 995, 1311
DpnI GATC 5 cut(s) 249, 408, 571, 727, 744
DpnII GATC 5 cut(s) 247, 406, 569, 725, 742
DraI TTTAAA 1 cut(s) 951
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 1071
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 5 cut(s) 274, 556, 603, 717, 762
Eco57I CTGAAG 2 cut(s) 399, 513
Eco72I CACGTG 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 480
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO109I RGGNCCY 4 cut(s) 274, 556, 717, 1068
EcoRII CCWGG 5 cut(s) 127, 232, 599, 1086, 1296
EcoT14I CCWWGG 1 cut(s) 1071
ErhI CCWWGG 1 cut(s) 1071
Esp3I CGTCTC 1 cut(s) 571
FaeI CATG 2 cut(s) 72, 434
FaqI GGGAC 3 cut(s) 110, 260, 448
FatI CATG 2 cut(s) 68, 430
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 3 cut(s) 211, 988, 1080
FokI GGATG 4 cut(s) 151, 159, 995, 1103
Fsp4HI GCNGC 3 cut(s) 211, 988, 1080
FspBI CTAG 4 cut(s) 180, 305, 1065, 1205
GluI GCNGC 3 cut(s) 211, 988, 1080
GsuI CTGGAG 2 cut(s) 129, 949
HaeIII GGCC 1 cut(s) 1070
HapII CCGG 1 cut(s) 1260
Hin1II CATG 2 cut(s) 72, 434
HindIII AAGCTT 2 cut(s) 137, 1308
HinfI GANTC 3 cut(s) 237, 582, 1019
HpaII CCGG 1 cut(s) 1260
HphI GGTGA 2 cut(s) 212, 524
Hpy166II GTNNAC 4 cut(s) 814, 1003, 1106, 1291
Hpy188I TCNGA 4 cut(s) 493, 775, 998, 1121
Hpy188III TCNNGA 4 cut(s) 410, 832, 862, 1225
Hpy8I GTNNAC 4 cut(s) 814, 1003, 1106, 1291
HpyAV CCTTC 5 cut(s) 4, 476, 775, 812, 829
HpyCH4III ACNGT 5 cut(s) 103, 326, 596, 1043, 1103
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 9 cut(s) 145, 295, 300, 309, 984, 1076, 1175, 1260, 1269
HpyF3I CTNAG 4 cut(s) 480, 863, 995, 1311
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 2 cut(s) 72, 434
KflI GGGWCCC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 1259
KroNI GCCGGC 1 cut(s) 1261
Kzo9I GATC 5 cut(s) 247, 406, 569, 725, 742
LmnI GCTCC 5 cut(s) 110, 286, 303, 1026, 1175
Lsp1109I GCAGC 2 cut(s) 974, 1091
LweI GCATC 7 cut(s) 76, 173, 298, 625, 967, 1122, 1156
MaeI CTAG 4 cut(s) 180, 305, 1065, 1205
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 4 cut(s) 530, 1058, 1234, 1280
MalI GATC 5 cut(s) 249, 408, 571, 727, 744
MboI GATC 5 cut(s) 247, 406, 569, 725, 742
MboII GAAGA 8 cut(s) 26, 42, 45, 218, 221, 320, 392, 1295
MhlI GDGCHC 2 cut(s) 625, 785
MluCI AATT 1 cut(s) 267
MlyI GAGTC 2 cut(s) 231, 591
MmeI TCCRAC 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 1259
MseI TTAA 5 cut(s) 96, 159, 399, 950, 1098
MslI CAYNNNNRTG 3 cut(s) 73, 788, 963
MspA1I CMGCKG 1 cut(s) 894
MspI CCGG 1 cut(s) 1260
MspR9I CCNGG 5 cut(s) 129, 234, 601, 1088, 1298
MvaI CCWGG 5 cut(s) 129, 234, 601, 1088, 1298
MwoI GCNNNNNNNGC 9 cut(s) 145, 295, 300, 309, 984, 1076, 1175, 1260, 1269
NaeI GCCGGC 1 cut(s) 1261
NdeII GATC 5 cut(s) 247, 406, 569, 725, 742
NgoMIV GCCGGC 1 cut(s) 1259
NlaIII CATG 2 cut(s) 72, 434
NlaIV GGNNCC 7 cut(s) 275, 276, 323, 558, 795, 935, 1092
NmuCI GTSAC 3 cut(s) 530, 1234, 1280
NspI RCATGY 2 cut(s) 72, 434
NspV TTCGAA 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 434
PasI CCCWGGG 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 1261
PfeI GAWTC 1 cut(s) 1019
PflMI CCANNNNNTGG 1 cut(s) 612
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 212, 989, 1081
PleI GAGTC 2 cut(s) 231, 590
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 2 cut(s) 231, 590
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 3 cut(s) 274, 556, 717
PshAI GACNNNNGTC 1 cut(s) 1232
PsiI TTATAA 1 cut(s) 668
Psp5II RGGWCCY 3 cut(s) 274, 556, 717
Psp6I CCWGG 5 cut(s) 127, 232, 599, 1086, 1296
PspCI CACGTG 1 cut(s) 197
PspGI CCWGG 5 cut(s) 127, 232, 599, 1086, 1296
PspN4I GGNNCC 7 cut(s) 275, 276, 323, 558, 795, 935, 1092
PspPI GGNCC 6 cut(s) 274, 556, 603, 717, 762, 1068
PspPPI RGGWCCY 3 cut(s) 274, 556, 717
PvuII CAGCTG 1 cut(s) 894
RsaI GTAC 3 cut(s) 323, 519, 899
RsaNI GTAC 3 cut(s) 322, 518, 898
RseI CAYNNNNRTG 3 cut(s) 73, 788, 963
SaqAI TTAA 5 cut(s) 96, 159, 399, 950, 1098
SatI GCNGC 3 cut(s) 211, 988, 1080
Sau3AI GATC 5 cut(s) 247, 406, 569, 725, 742
Sau96I GGNCC 6 cut(s) 274, 556, 603, 717, 762, 1068
SchI GAGTC 2 cut(s) 231, 591
ScrFI CCNGG 5 cut(s) 129, 234, 601, 1088, 1298
SduI GDGCHC 2 cut(s) 625, 785
SfaNI GCATC 7 cut(s) 76, 173, 298, 625, 967, 1122, 1156
SfuI TTCGAA 1 cut(s) 1154
SinI GGWCC 5 cut(s) 274, 556, 603, 717, 762
SmiMI CAYNNNNRTG 3 cut(s) 73, 788, 963
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SphI GCATGC 1 cut(s) 434
Sse9I AATT 1 cut(s) 267
SsiI CCGC 3 cut(s) 211, 301, 1270
SspI AATATT 1 cut(s) 488
SspMI CTAG 4 cut(s) 180, 305, 1065, 1205
StyD4I CCNGG 5 cut(s) 127, 232, 599, 1086, 1296
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 5 cut(s) 103, 326, 596, 1043, 1103
TaiI ACGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 409, 853, 1038, 1154
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 1019
Tru1I TTAA 5 cut(s) 96, 159, 399, 950, 1098
Tru9I TTAA 5 cut(s) 96, 159, 399, 950, 1098
TscAI CASTG 4 cut(s) 601, 790, 946, 1298
TseFI GTSAC 3 cut(s) 530, 1234, 1280
TseI GCWGC 2 cut(s) 987, 1079
Tsp45I GTSAC 3 cut(s) 530, 1234, 1280
TspDTI ATGAA 4 cut(s) 161, 757, 790, 1023
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 4 cut(s) 601, 790, 946, 1298
Van91I CCANNNNNTGG 1 cut(s) 612
VpaK11BI GGWCC 5 cut(s) 274, 556, 603, 717, 762
XagI CCTNNNNNAGG 1 cut(s) 866
XceI RCATGY 2 cut(s) 72, 434
XmiI GTMKAC 1 cut(s) 813
XspI CTAG 4 cut(s) 180, 305, 1065, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.