MD16G1112300.v1.1

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0003028
Physical Location & Seq
Reverse (-)
7873183 .. 7873968
786 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1112300.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGCTTCGGTAGTAAAGGGTATTGCAACATCTTCAATACTTAATACTTATGAAACAGAACGTAGGTCAATTGCCATTTTCAATACAGAACTTAGTATTCAGAATTTCAGAGCAGCCATGGCTGTTCCTGCTGTACTTGGTCTTGATCCAACCACTGCAAACTCAGTACATCGCATCATAAATGAGGGGGTTGGTTCCATTTTACCATATGGATTACAGAGGGTCATTTTGGATGGAATTTTCACAATAGGTCGTGCACCGCTATCAGAATCTCTTTTGAATGAAAACAACCCACTTGGCTCTTCCAAGGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

106

Amino Acids

11.16

Weight (kDa)

6.55

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 2 cut(s) 103, 237
AfaI GTAC 2 cut(s) 135, 168
AgsI TTSAA 3 cut(s) 36, 82, 280
Alw21I GWGCWC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 103, 237
BaeGI GKGCMC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 227
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 117, 306
BseDI CCNNGG 2 cut(s) 117, 306
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 117, 306
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 117, 306
Bst6I CTCTTC 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 92, 163
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNSI RCATGY 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 134, 167
CviAII CATG 2 cut(s) 118, 312
CviJI RGCY 4 cut(s) 5, 116, 122, 300
CviKI_1 RGCY 4 cut(s) 5, 116, 122, 300
CviQI GTAC 2 cut(s) 134, 167
DdeI CTNAG 2 cut(s) 92, 163
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 117, 306
EcoT14I CCWWGG 2 cut(s) 117, 306
ErhI CCWWGG 2 cut(s) 117, 306
FaeI CATG 2 cut(s) 121, 315
FaiI YATR 6 cut(s) 51, 119, 179, 208, 210, 313
FatI CATG 2 cut(s) 117, 311
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 121, 315
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 102, 110, 268
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 26, 158, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 2 cut(s) 92, 163
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 121, 315
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 307
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 183
MaeII ACGT 1 cut(s) 61
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 24, 294
MfeI CAATTG 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 3 cut(s) 69, 103, 237
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 2 cut(s) 178, 213
MseI TTAA 1 cut(s) 42
MunI CAATTG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 121, 315
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 1 cut(s) 315
PaeI GCATGC 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 196
RsaI GTAC 2 cut(s) 135, 168
RsaNI GTAC 2 cut(s) 134, 167
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 259
SetI ASST 3 cut(s) 64, 68, 253
SfaNI GCATC 1 cut(s) 183
SgeI CNNG 6 cut(s) 130, 140, 149, 155, 266, 308
SphI GCATGC 1 cut(s) 315
Sse9I AATT 3 cut(s) 69, 103, 237
SsiI CCGC 1 cut(s) 260
StyI CCWWGG 2 cut(s) 117, 306
TaiI ACGT 1 cut(s) 64
TasI AATT 3 cut(s) 69, 103, 237
TatI WGTACW 2 cut(s) 133, 166
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 66, 297
TspRI CASTG 1 cut(s) 160
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 2 cut(s) 103, 237
XceI RCATGY 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.