Rh2DG080900

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003028
Physical Location & Seq
Reverse (-)
6312136 .. 6321143
9008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG080900.1

Sequence Viewer

Length: 600 bp
ATGATCTTCAAATTAGTAGGTCGAGAGCTTGGAGACATAAATGTGATTGACATAAAACCTTGGGTTTTTGAGCAAGTTGTCAACCCGGTCTCTGTTGCATACTTCTCTCAGTACAAACTGAATACATTACTACTTAAGCAACTTGAAAATCTCAGCTTCAAGTATTATACCCCTGACGGGTTGAAAGGCATTGACCATGAACCCCTTGAGGCAAGGCAAATATTGATGGGCTATGAATGTGTTTCCATCAATGCCAGTGATGATATTGTTTCCGTGACTGCATCTTTTCTCAAGGATGGGAAACATATGGAGAGGAATATCATATGCAATATGGTTGTAGGTACTGACGGTGCTGGAAGTACTGTATGTAAGCTGGCTGGTATAGATATGAGAGGTGAAAAGGACTTGCAGAAGCTTTTCCTCCAGTCAGACCTGTCAGCCTTGTTCAATAAACCAGCCATAACATGCAAAATATTTCATTTGACATGGGTTTCAACGTTCGTTTCTGTCAAGATTCAAGAACGTTCGATATCTAAAACTTATGAGCTAAATTCCAATTATGGAATTGCACAAGTAGCATGTATAGAAATCATATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

199

Amino Acids

22.28

Weight (kDa)

5.93

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 72 - 137 3.9e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 497, 523
AcsI RAATTY 1 cut(s) 550
AfaI GTAC 3 cut(s) 113, 343, 361
AfiI CCNNNNNNNGG 1 cut(s) 177
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 7 cut(s) 10, 146, 160, 184, 448, 495, 518
AluBI AGCT 5 cut(s) 28, 156, 373, 415, 547
AluI AGCT 5 cut(s) 28, 156, 373, 415, 547
Alw26I GTCTC 2 cut(s) 27, 94
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 407
BccI CCATC 3 cut(s) 220, 254, 290
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 27, 94
BfrI CTTAAG 1 cut(s) 134
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 227, 275
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 255, 424
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 122, 166
BseNI ACTGG 2 cut(s) 255, 424
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 27, 94
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 2 cut(s) 121, 165
BspTI CTTAAG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 255, 424
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 350, 364
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 108, 152, 597
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 27, 94
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 468, 582
BstSCI CCNGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 375
Csp6I GTAC 3 cut(s) 112, 342, 360
CviAII CATG 4 cut(s) 197, 465, 486, 579
CviJI RGCY 9 cut(s) 28, 156, 231, 373, 377, 415, 440, 458, 547
CviKI_1 RGCY 9 cut(s) 28, 156, 231, 373, 377, 415, 440, 458, 547
CviQI GTAC 3 cut(s) 112, 342, 360
DdeI CTNAG 3 cut(s) 108, 152, 597
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 531
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 4 cut(s) 200, 468, 489, 582
FatI CATG 4 cut(s) 196, 464, 485, 578
FauNDI CATATG 2 cut(s) 306, 323
FokI GGATG 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 407
HapII CCGG 1 cut(s) 86
Hin1II CATG 4 cut(s) 200, 468, 489, 582
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 1 cut(s) 514
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 3 cut(s) 23, 511, 518
Hpy8I GTNNAC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 350, 364
HpyCH4IV ACGT 2 cut(s) 497, 523
HpyCH4V TGCA 6 cut(s) 98, 281, 327, 409, 468, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 3 cut(s) 108, 152, 597
HpySE526I ACGT 2 cut(s) 497, 523
Hsp92II CATG 4 cut(s) 200, 468, 489, 582
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 99, 186, 268, 339, 359, 363, 437, 446, 468
LweI GCATC 1 cut(s) 290
MaeII ACGT 2 cut(s) 497, 523
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 4 cut(s) 11, 550, 556, 564
MnlI CCTC 4 cut(s) 202, 306, 386, 431
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 1 cut(s) 86
NdeI CATATG 2 cut(s) 306, 323
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 200, 468, 489, 582
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 2 cut(s) 468, 582
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 514
Psp1406I AACGTT 2 cut(s) 497, 523
RsaI GTAC 3 cut(s) 113, 343, 361
RsaNI GTAC 3 cut(s) 112, 342, 360
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 86
SfaNI GCATC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 3 cut(s) 134, 206, 290
SmoI CTYRAG 3 cut(s) 134, 206, 290
Sse9I AATT 4 cut(s) 11, 550, 556, 564
SspI AATATT 2 cut(s) 222, 474
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 350, 364
TaiI ACGT 2 cut(s) 500, 526
TaqI TCGA 2 cut(s) 22, 527
TasI AATT 4 cut(s) 11, 550, 556, 564
TatI WGTACW 2 cut(s) 111, 359
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 213, 249, 467
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 1 cut(s) 550
XceI RCATGY 2 cut(s) 468, 582
XmnI GAANNNNTTC 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.