Rmu_sc0010203.1_g000008

FAD binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010203.1
Physical Location & Seq
Forward (+)
19681 .. 22064
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010203.1_g000008.1.cds

Sequence Viewer

Length: 1413 bp
atgagaggtgaaaaggacttgcagaagcttgtgagtgtccatttcttgagtagagaccttggaaattacttgctcagtgagagaccaggcatgctgttttttatcttcaatactgaagctataggggtccttgttgcacatgatctcaagcaaggggaatttgtattgcagataccattttatccaccccagcaaaaccttgaagatttcagtgccaagacatgtgagaggatgattttcaaattggtaggtcgagagcttggagacataaatgtgattgacataaaaccctgggtgatgcatgctgaagttgccgagaagtttctaagtagtcgaaaccgtgtgattcttgctggtgatgctgctcatcgattccctcctgctggtggatttggtatgaataccggaattcaggattctcataaccttgcctggaagatagcttctgtagtaaagggtattgcaccaccttcaatacttaatacttatgaaacagaacgtaggccgattgccattttcaatacaactcttagtattcagaacttcaaagcagccatggctgttcctggtgcacttggtcttgatccaactattgcaaactcggtacatcgagtaataaataagggggttgggtccattttaccatctggactacagagcgccattttggatggaattttcatcttaggtcgtgcacagttatcagaaactcttttgaatgaaaacaacccagttggagctttaaggcttgctaatctgagacgtatatttgaagaaggaaagagtctccagctccagttcccggcagaagatcttggtttcaggtacctagaaggcgcacttgttcctgaccatgatggtgcactgggtggcccagatggacctactggtcgccggagggactatgttcctactgcagatccaggttcaaggcttcctcacataaatgtgaggatattgtcaaattcatcgagtgaggcaactatttctacactggatcttatatctggagacaaaattgagtttctccttatcatagcaccgatagagccatcctaccatcttgctcatgctgcattgaaggtggctgaggaattcaaagtttctgcaagggtgtgtgtgttgtggcctgctggtagtgctaaaggagtggaggtaggaagtaaggtatcattgaaaccgcgggacaattacatggacgttatggaagttaaaaagtcatcaaatgcttcgtcatggtgggacatctgtcaaatgactgataaaggagccatcctagttcggcctgatgagcatgttgcttggcgtctgaagtctggagttgttggggaccctatgagggaaatgagaagggctttttctgctgccctaggcttgaagtcacatattaaagaccaagaagctgatcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

51.53

Weight (kDa)

6.91

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 888
Acc65I GGTACC 1 cut(s) 825
AccB1I GGYRCC 1 cut(s) 825
AccII CGCG 1 cut(s) 1183
AciI CCGC 2 cut(s) 1181, 1183
AclWI GGATC 3 cut(s) 578, 914, 1005
AcsI RAATTY 5 cut(s) 158, 408, 675, 964, 1094
AcuI CTGAAG 3 cut(s) 135, 327, 1331
AcyI GRCGYC 1 cut(s) 1306
AdeI CACNNNGTG 1 cut(s) 869
AfaI GTAC 2 cut(s) 606, 827
AfiI CCNNNNNNNGG 4 cut(s) 383, 386, 802, 1339
AflIII ACRYGT 1 cut(s) 221
AjnI CCWGG 5 cut(s) 85, 290, 431, 565, 922
AluBI AGCT 7 cut(s) 28, 119, 259, 443, 740, 793, 1403
AluI AGCT 7 cut(s) 28, 119, 259, 443, 740, 793, 1403
Alw21I GWGCWC 3 cut(s) 574, 697, 865
Alw26I GTCTC 6 cut(s) 48, 76, 258, 754, 791, 1005
Alw44I GTGCAC 3 cut(s) 570, 693, 861
AlwI GGATC 3 cut(s) 578, 914, 1005
AoxI GGCC 4 cut(s) 503, 871, 1127, 1283
ApaLI GTGCAC 3 cut(s) 570, 693, 861
ApeKI GCWGC 4 cut(s) 362, 551, 1073, 1364
ApoI RAATTY 5 cut(s) 158, 408, 675, 964, 1094
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
Asp718I GGTACC 1 cut(s) 825
AspA2I CCTAGG 1 cut(s) 1369
AspLEI GCGC 2 cut(s) 662, 839
AspS9I GGNCC 5 cut(s) 127, 633, 872, 881, 1330
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 3 cut(s) 20, 307, 368
AvaII GGWCC 4 cut(s) 127, 633, 881, 1330
AvrII CCTAGG 1 cut(s) 1369
BaeGI GKGCMC 3 cut(s) 574, 697, 865
BanI GGYRCC 1 cut(s) 825
Bbv12I GWGCWC 3 cut(s) 574, 697, 865
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 349, 563, 1060, 1351
BccI CCATC 7 cut(s) 652, 665, 851, 872, 1060, 1068, 1280
BciT130I CCWGG 5 cut(s) 87, 292, 433, 567, 924
BclI TGATCA 1 cut(s) 1405
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 6 cut(s) 48, 76, 258, 754, 791, 1005
BfaI CTAG 3 cut(s) 830, 1277, 1370
BfmI CTRYAG 4 cut(s) 120, 447, 653, 915
BfoI RGCGCY 1 cut(s) 663
BglII AGATCT 1 cut(s) 811
BisI GCNGC 4 cut(s) 363, 552, 1074, 1365
BlnI CCTAGG 1 cut(s) 1369
BlsI GCNGC 4 cut(s) 364, 553, 1075, 1366
Bme1390I CCNGG 6 cut(s) 87, 292, 433, 567, 803, 924
Bme18I GGWCC 4 cut(s) 127, 633, 881, 1330
BmgT120I GGNCC 5 cut(s) 127, 633, 872, 881, 1330
BmiI GGNNCC 6 cut(s) 128, 634, 827, 1270, 1331, 1332
BmrFI CCNGG 6 cut(s) 87, 292, 433, 567, 803, 924
BmrI ACTGGG 2 cut(s) 725, 875
BmsI GCATC 2 cut(s) 288, 349
BmuI ACTGGG 2 cut(s) 725, 875
BoxI GACNNNNGTC 1 cut(s) 1248
BpmI CTGGAG 4 cut(s) 773, 779, 1029, 1338
Bpu10I CCTNAGC 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 67, 131
BpuMI CCSGG 1 cut(s) 803
Bsa29I ATCGAT 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 1306
BsaI GGTCTC 2 cut(s) 48, 76
BsaJI CCNNGG 6 cut(s) 58, 290, 291, 555, 1181, 1369
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 386, 802, 1339
Bse1I ACTGG 5 cut(s) 731, 796, 870, 892, 999
BseBI CCWGG 5 cut(s) 87, 292, 433, 567, 924
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 6 cut(s) 58, 290, 291, 555, 1181, 1369
BseGI GGATG 4 cut(s) 237, 676, 1052, 1272
BseLI CCNNNNNNNGG 4 cut(s) 383, 386, 802, 1339
BseMII CTCAG 3 cut(s) 88, 749, 1080
BseNI ACTGG 5 cut(s) 731, 796, 870, 892, 999
BseSI GKGCMC 3 cut(s) 574, 697, 865
BseXI GCAGC 4 cut(s) 349, 563, 1060, 1351
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 1183
BshFI GGCC 4 cut(s) 505, 873, 1129, 1285
BshNI GGYRCC 1 cut(s) 825
BshVI ATCGAT 1 cut(s) 370
BsiHKAI GWGCWC 3 cut(s) 574, 697, 865
BsiSI CCGG 3 cut(s) 405, 803, 895
BslFI GGGAC 4 cut(s) 914, 1199, 1256, 1343
BslI CCNNNNNNNGG 4 cut(s) 383, 386, 802, 1339
BsmAI GTCTC 6 cut(s) 48, 76, 258, 754, 791, 1005
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 4 cut(s) 914, 1199, 1256, 1343
BsnI GGCC 4 cut(s) 505, 873, 1129, 1285
Bso31I GGTCTC 2 cut(s) 48, 76
Bsp1286I GDGCHC 3 cut(s) 574, 697, 865
Bsp143I GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 1181, 1183
BspANI GGCC 4 cut(s) 505, 873, 1129, 1285
BspCNI CTCAG 3 cut(s) 87, 750, 1081
BspDI ATCGAT 1 cut(s) 370
BspFNI CGCG 1 cut(s) 1183
BspLI GGNNCC 6 cut(s) 128, 634, 827, 1270, 1331, 1332
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 3 cut(s) 578, 914, 1005
BspT107I GGYRCC 1 cut(s) 825
BspTNI GGTCTC 2 cut(s) 48, 76
BsrI ACTGG 5 cut(s) 731, 796, 870, 892, 999
BssECI CCNNGG 6 cut(s) 58, 290, 291, 555, 1181, 1369
BssMI GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
BssNI GRCGYC 1 cut(s) 1306
BssT1I CCWWGG 3 cut(s) 58, 555, 1369
Bst2UI CCWGG 5 cut(s) 87, 292, 433, 567, 924
Bst4CI ACNGT 2 cut(s) 341, 699
BstACI GRCGYC 1 cut(s) 1306
BstC8I GCNNGC 4 cut(s) 92, 303, 750, 1131
BstDEI CTNAG 6 cut(s) 74, 326, 530, 685, 758, 1089
BstDSI CCRYGG 2 cut(s) 555, 1181
BstF5I GGATG 4 cut(s) 237, 676, 1052, 1272
BstFNI CGCG 1 cut(s) 1183
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 2 cut(s) 662, 839
BstKTI GATC 6 cut(s) 145, 586, 814, 922, 1000, 1408
BstMAI GTCTC 6 cut(s) 48, 76, 258, 754, 791, 1005
BstMBI GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
BstMWI GCNNNNNNNGC 7 cut(s) 311, 359, 557, 1073, 1139, 1291, 1361
BstNI CCWGG 5 cut(s) 87, 292, 433, 567, 924
BstNSI RCATGY 4 cut(s) 94, 225, 305, 1298
BstPAI GACNNNNGTC 1 cut(s) 1248
BstSCI CCNGG 6 cut(s) 85, 290, 431, 565, 801, 922
BstSFI CTRYAG 4 cut(s) 120, 447, 653, 915
BstSLI GKGCMC 3 cut(s) 574, 697, 865
BstUI CGCG 1 cut(s) 1183
BstV1I GCAGC 4 cut(s) 349, 563, 1060, 1351
BstX2I RGATCY 3 cut(s) 811, 919, 997
BstYI RGATCY 3 cut(s) 811, 919, 997
Bsu15I ATCGAT 1 cut(s) 370
BsuRI GGCC 4 cut(s) 505, 873, 1129, 1285
BsuTUI ATCGAT 1 cut(s) 370
BtgI CCRYGG 2 cut(s) 555, 1181
BtsCI GGATG 4 cut(s) 237, 676, 1052, 1272
BtsIMutI CAGTG 4 cut(s) 82, 217, 863, 992
Cac8I GCNNGC 4 cut(s) 92, 303, 750, 1131
CfoI GCGC 2 cut(s) 662, 839
Cfr13I GGNCC 5 cut(s) 127, 633, 872, 881, 1330
Cfr42I CCGCGG 1 cut(s) 1184
ClaI ATCGAT 1 cut(s) 370
CseI GACGC 1 cut(s) 1295
Csp6I GTAC 2 cut(s) 605, 826
CviQI GTAC 2 cut(s) 605, 826
DdeI CTNAG 6 cut(s) 74, 326, 530, 685, 758, 1089
DpnI GATC 6 cut(s) 144, 585, 813, 921, 999, 1407
DpnII GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
DraIII CACNNNGTG 1 cut(s) 869
DrdI GACNNNNNNGTC 1 cut(s) 888
DseDI GACNNNNNNGTC 1 cut(s) 888
Eco130I CCWWGG 3 cut(s) 58, 555, 1369
Eco31I GGTCTC 2 cut(s) 48, 76
Eco47I GGWCC 4 cut(s) 127, 633, 881, 1330
Eco57I CTGAAG 3 cut(s) 135, 327, 1331
EcoO109I RGGNCCY 2 cut(s) 127, 1330
EcoRI GAATTC 2 cut(s) 408, 1094
EcoRII CCWGG 5 cut(s) 85, 290, 431, 565, 922
EcoT14I CCWWGG 3 cut(s) 58, 555, 1369
EcoT22I ATGCAT 1 cut(s) 303
ErhI CCWWGG 3 cut(s) 58, 555, 1369
Esp3I CGTCTC 1 cut(s) 754
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 4 cut(s) 914, 1199, 1256, 1343
FauI CCCGC 1 cut(s) 1176
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 4 cut(s) 363, 552, 1074, 1365
FokI GGATG 4 cut(s) 244, 683, 1039, 1259
Fsp4HI GCNGC 4 cut(s) 363, 552, 1074, 1365
FspBI CTAG 3 cut(s) 830, 1277, 1370
GlaI GCGC 2 cut(s) 661, 838
GluI GCNGC 4 cut(s) 363, 552, 1074, 1365
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 4 cut(s) 773, 779, 1029, 1338
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 4 cut(s) 505, 873, 1129, 1285
HapII CCGG 3 cut(s) 405, 803, 895
HgaI GACGC 1 cut(s) 1295
HhaI GCGC 2 cut(s) 662, 839
Hin1I GRCGYC 1 cut(s) 1306
Hin6I GCGC 2 cut(s) 660, 837
HinP1I GCGC 2 cut(s) 660, 837
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 4 cut(s) 346, 372, 416, 784
HpaII CCGG 3 cut(s) 405, 803, 895
HphI GGTGA 3 cut(s) 20, 307, 368
Hpy166II GTNNAC 3 cut(s) 572, 695, 863
Hpy188I TCNGA 4 cut(s) 540, 706, 759, 1311
Hpy188III TCNNGA 8 cut(s) 46, 254, 413, 581, 648, 848, 1008, 1317
Hpy8I GTNNAC 3 cut(s) 572, 695, 863
HpyAV CCTTC 5 cut(s) 480, 770, 827, 1075, 1344
HpyCH4III ACNGT 2 cut(s) 341, 699
HpyCH4IV ACGT 3 cut(s) 499, 763, 1200
HpyF10VI GCNNNNNNNGC 7 cut(s) 311, 359, 557, 1073, 1139, 1291, 1361
HpyF3I CTNAG 6 cut(s) 74, 326, 530, 685, 758, 1089
HpySE526I ACGT 3 cut(s) 499, 763, 1200
Hsp92I GRCGYC 1 cut(s) 1306
HspAI GCGC 2 cut(s) 660, 837
KflI GGGWCCC 1 cut(s) 1330
KpnI GGTACC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 1405
KspI CCGCGG 1 cut(s) 1184
Kzo9I GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
LmnI GCTCC 3 cut(s) 737, 798, 1268
Lsp1109I GCAGC 4 cut(s) 349, 563, 1060, 1351
LweI GCATC 2 cut(s) 288, 349
MaeI CTAG 3 cut(s) 830, 1277, 1370
MaeII ACGT 3 cut(s) 499, 763, 1200
MaeIII GTNAC 1 cut(s) 1380
MalI GATC 6 cut(s) 144, 585, 813, 921, 999, 1407
MboI GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
MboII GAAGA 5 cut(s) 97, 215, 448, 785, 821
MflI RGATCY 3 cut(s) 811, 919, 997
MhlI GDGCHC 3 cut(s) 574, 697, 865
MluCI AATT 9 cut(s) 64, 158, 242, 408, 675, 964, 1017, 1094, 1189
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 2 cut(s) 611, 715
MnlI CCTC 9 cut(s) 222, 387, 891, 945, 948, 970, 1084, 1147, 1332
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 4 cut(s) 480, 743, 1212, 1389
MslI CAYNNNNRTG 4 cut(s) 272, 858, 945, 947
MspA1I CMGCKG 1 cut(s) 1183
MspI CCGG 3 cut(s) 405, 803, 895
MspR9I CCNGG 6 cut(s) 87, 292, 433, 567, 803, 924
MvaI CCWGG 5 cut(s) 87, 292, 433, 567, 924
MvnI CGCG 1 cut(s) 1183
MwoI GCNNNNNNNGC 7 cut(s) 311, 359, 557, 1073, 1139, 1291, 1361
NciI CCSGG 1 cut(s) 803
NcoI CCATGG 1 cut(s) 555
NdeII GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
NlaIV GGNNCC 6 cut(s) 128, 634, 827, 1270, 1331, 1332
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 1380
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 4 cut(s) 94, 225, 305, 1298
PaeI GCATGC 2 cut(s) 94, 305
PasI CCCWGGG 1 cut(s) 291
PciI ACATGT 1 cut(s) 221
PfeI GAWTC 3 cut(s) 346, 372, 416
PkrI GCNGC 4 cut(s) 364, 553, 1075, 1366
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
PpuMI RGGWCCY 2 cut(s) 127, 1330
PscI ACATGT 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 1248
Psp5II RGGWCCY 2 cut(s) 127, 1330
Psp6I CCWGG 5 cut(s) 85, 290, 431, 565, 922
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 5 cut(s) 85, 290, 431, 565, 922
PspN4I GGNNCC 6 cut(s) 128, 634, 827, 1270, 1331, 1332
PspPI GGNCC 5 cut(s) 127, 633, 872, 881, 1330
PspPPI RGGWCCY 2 cut(s) 127, 1330
PstI CTGCAG 1 cut(s) 919
PsuI RGATCY 3 cut(s) 811, 919, 997
RsaI GTAC 2 cut(s) 606, 827
RsaNI GTAC 2 cut(s) 605, 826
RseI CAYNNNNRTG 4 cut(s) 272, 858, 945, 947
SacII CCGCGG 1 cut(s) 1184
SaqAI TTAA 4 cut(s) 480, 743, 1212, 1389
SatI GCNGC 4 cut(s) 363, 552, 1074, 1365
Sau3AI GATC 6 cut(s) 142, 583, 811, 919, 997, 1405
Sau96I GGNCC 5 cut(s) 127, 633, 872, 881, 1330
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 6 cut(s) 87, 292, 433, 567, 803, 924
SduI GDGCHC 3 cut(s) 574, 697, 865
SfaNI GCATC 2 cut(s) 288, 349
SfcI CTRYAG 4 cut(s) 120, 447, 653, 915
Sfr303I CCGCGG 1 cut(s) 1184
SgrBI CCGCGG 1 cut(s) 1184
SinI GGWCC 4 cut(s) 127, 633, 881, 1330
SmiMI CAYNNNNRTG 4 cut(s) 272, 858, 945, 947
SmlI CTYRAG 2 cut(s) 46, 146
SmoI CTYRAG 2 cut(s) 46, 146
SphI GCATGC 2 cut(s) 94, 305
Sse9I AATT 9 cut(s) 64, 158, 242, 408, 675, 964, 1017, 1094, 1189
SsiI CCGC 2 cut(s) 1181, 1183
SspMI CTAG 3 cut(s) 830, 1277, 1370
StyD4I CCNGG 6 cut(s) 85, 290, 431, 565, 801, 922
StyI CCWWGG 3 cut(s) 58, 555, 1369
TaaI ACNGT 2 cut(s) 341, 699
TaiI ACGT 3 cut(s) 502, 766, 1203
TaqI TCGA 5 cut(s) 253, 334, 370, 610, 971
TasI AATT 9 cut(s) 64, 158, 242, 408, 675, 964, 1017, 1094, 1189
TfiI GAWTC 3 cut(s) 346, 372, 416
Tru1I TTAA 4 cut(s) 480, 743, 1212, 1389
Tru9I TTAA 4 cut(s) 480, 743, 1212, 1389
TscAI CASTG 4 cut(s) 82, 217, 870, 999
TseFI GTSAC 1 cut(s) 1380
TseI GCWGC 4 cut(s) 362, 551, 1073, 1364
Tsp45I GTSAC 1 cut(s) 1380
TspDTI ATGAA 5 cut(s) 413, 504, 670, 735, 957
TspRI CASTG 4 cut(s) 82, 217, 870, 999
VneI GTGCAC 3 cut(s) 570, 693, 861
VpaK11BI GGWCC 4 cut(s) 127, 633, 881, 1330
XapI RAATTY 5 cut(s) 158, 408, 675, 964, 1094
XceI RCATGY 4 cut(s) 94, 225, 305, 1298
XmaJI CCTAGG 1 cut(s) 1369
XspI CTAG 3 cut(s) 830, 1277, 1370
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.