FAD binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24340 |
| fragaria_vesca | FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 |
| malus_domestica | MD13G1113200.v1.1 MD16G1112300.v1.1 |
| prunus_persica | Prupe.1G232900_v2.0.a1 |
| pyrus_communis | pycom13g09860 |
| rosa_chinensis | RchiOBHm_Chr4g0431061 |
| rosa_laevigata | RLG00000006928 RLG00000016399 |
| rosa_multiflora | Rmu_co8265599.1_g000001 Rmu_sc0003592.1_g000008 Rmu_sc0010203.1_g000008 Rmu_sc0041255.1_g000001 Rmu_sc0043112.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00114870 Rroxscaffold_2G00148110 Rroxscaffold_5G00372680 |
| rosa_rugosa | Rorug02G0035800 Rorug02G0035800 Rorug02G0035900 Rorug02G0035900 Rorug04G0247900 |
| rosa_samantha | Rh2DG080900 Rh2DG081100 Rh4AG304600 Rh4BG311800 Rh4CG328100 Rh4DG308300 |
| rosa_wichuraiana | Rw4G026450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 171, 1635 |
| Acc65I | GGTACC | 1 cut(s) | 1572 |
| AccB1I | GGYRCC | 1 cut(s) | 1572 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 2 cut(s) | 33, 218 |
| AclWI | GGATC | 3 cut(s) | 316, 1325, 1661 |
| AcsI | RAATTY | 4 cut(s) | 905, 1155, 1422, 1711 |
| AcuI | CTGAAG | 3 cut(s) | 555, 882, 1074 |
| AdeI | CACNNNGTG | 1 cut(s) | 1616 |
| AfaI | GTAC | 8 cut(s) | 235, 473, 529, 703, 721, 726, 1353, 1574 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 316, 537, 1130, 1133, 1549 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AflIII | ACRYGT | 2 cut(s) | 664, 968 |
| AjnI | CCWGG | 5 cut(s) | 309, 832, 1178, 1312, 1669 |
| Alw21I | GWGCWC | 3 cut(s) | 1321, 1444, 1612 |
| Alw26I | GTCTC | 7 cut(s) | 179, 336, 454, 795, 823, 1005, 1538 |
| Alw44I | GTGCAC | 3 cut(s) | 1317, 1440, 1608 |
| AlwI | GGATC | 3 cut(s) | 316, 1325, 1661 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 167 |
| AoxI | GGCC | 6 cut(s) | 34, 307, 547, 589, 1250, 1618 |
| ApaLI | GTGCAC | 3 cut(s) | 1317, 1440, 1608 |
| ApeKI | GCWGC | 3 cut(s) | 499, 1109, 1298 |
| ApoI | RAATTY | 4 cut(s) | 905, 1155, 1422, 1711 |
| Asp718I | GGTACC | 1 cut(s) | 1572 |
| AspLEI | GCGC | 3 cut(s) | 218, 1409, 1586 |
| AspS9I | GGNCC | 6 cut(s) | 164, 589, 874, 1380, 1619, 1628 |
| AsuC2I | CCSGG | 2 cut(s) | 446, 1550 |
| AsuHPI | GGTGA | 4 cut(s) | 767, 1054, 1115, 1420 |
| AvaII | GGWCC | 4 cut(s) | 164, 874, 1380, 1628 |
| AxyI | CCTNAGG | 1 cut(s) | 1432 |
| BaeGI | GKGCMC | 3 cut(s) | 1321, 1444, 1612 |
| BanI | GGYRCC | 1 cut(s) | 1572 |
| BanII | GRGCYC | 1 cut(s) | 97 |
| Bbv12I | GWGCWC | 3 cut(s) | 1321, 1444, 1612 |
| BbvI | GCAGC | 3 cut(s) | 511, 1096, 1310 |
| BciT130I | CCWGG | 5 cut(s) | 311, 834, 1180, 1314, 1671 |
| BcnI | CCSGG | 2 cut(s) | 446, 1550 |
| BcoDI | GTCTC | 7 cut(s) | 179, 336, 454, 795, 823, 1005, 1538 |
| BfaI | CTAG | 1 cut(s) | 1577 |
| BfmI | CTRYAG | 4 cut(s) | 867, 1194, 1400, 1662 |
| BfoI | RGCGCY | 1 cut(s) | 1410 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BglII | AGATCT | 1 cut(s) | 1558 |
| BisI | GCNGC | 4 cut(s) | 34, 500, 1110, 1299 |
| BlsI | GCNGC | 4 cut(s) | 35, 501, 1111, 1300 |
| BmcAI | AGTACT | 1 cut(s) | 721 |
| Bme1390I | CCNGG | 7 cut(s) | 311, 446, 834, 1180, 1314, 1550, 1671 |
| Bme18I | GGWCC | 4 cut(s) | 164, 874, 1380, 1628 |
| BmgT120I | GGNCC | 6 cut(s) | 164, 589, 874, 1380, 1619, 1628 |
| BmiI | GGNNCC | 4 cut(s) | 388, 875, 1381, 1574 |
| BmrFI | CCNGG | 7 cut(s) | 311, 446, 834, 1180, 1314, 1550, 1671 |
| BmrI | ACTGGG | 1 cut(s) | 1622 |
| BmsI | GCATC | 5 cut(s) | 650, 674, 1035, 1096, 1499 |
| BmuI | ACTGGG | 1 cut(s) | 1622 |
| BpmI | CTGGAG | 3 cut(s) | 229, 1520, 1526 |
| BpuEI | CTTGAG | 5 cut(s) | 405, 587, 635, 814, 878 |
| BpuMI | CCSGG | 2 cut(s) | 446, 1550 |
| Bsa29I | ATCGAT | 1 cut(s) | 1117 |
| BsaAI | YACGTR | 1 cut(s) | 728 |
| BsaI | GGTCTC | 5 cut(s) | 179, 336, 454, 795, 823 |
| BsaJI | CCNNGG | 3 cut(s) | 805, 1037, 1302 |
| BsaWI | WCCGGW | 2 cut(s) | 142, 1151 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 316, 537, 1130, 1133, 1549 |
| Bse1I | ACTGG | 5 cut(s) | 341, 615, 1543, 1617, 1639 |
| Bse21I | CCTNAGG | 1 cut(s) | 1432 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseBI | CCWGG | 5 cut(s) | 311, 834, 1180, 1314, 1671 |
| BseCI | ATCGAT | 1 cut(s) | 1117 |
| BseDI | CCNNGG | 3 cut(s) | 805, 1037, 1302 |
| BseGI | GGATG | 5 cut(s) | 250, 310, 661, 984, 1423 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 316, 537, 1130, 1133, 1549 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseMII | CTCAG | 5 cut(s) | 414, 482, 526, 835, 1496 |
| BseNI | ACTGG | 5 cut(s) | 341, 615, 1543, 1617, 1639 |
| BseRI | GAGGAG | 1 cut(s) | 332 |
| BseSI | GKGCMC | 3 cut(s) | 1321, 1444, 1612 |
| BseXI | GCAGC | 3 cut(s) | 511, 1096, 1310 |
| BseYI | CCCAGC | 2 cut(s) | 202, 936 |
| BsgI | GTGCAG | 1 cut(s) | 180 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 6 cut(s) | 36, 309, 549, 591, 1252, 1620 |
| BshNI | GGYRCC | 1 cut(s) | 1572 |
| BshVI | ATCGAT | 1 cut(s) | 1117 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1321, 1444, 1612 |
| BsiSI | CCGG | 5 cut(s) | 143, 446, 1152, 1550, 1642 |
| BslFI | GGGAC | 2 cut(s) | 68, 1661 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 316, 537, 1130, 1133, 1549 |
| BsmAI | GTCTC | 7 cut(s) | 179, 336, 454, 795, 823, 1005, 1538 |
| BsmFI | GGGAC | 2 cut(s) | 68, 1661 |
| BsmI | GAATGC | 1 cut(s) | 487 |
| BsnI | GGCC | 6 cut(s) | 36, 309, 549, 591, 1252, 1620 |
| Bso31I | GGTCTC | 5 cut(s) | 179, 336, 454, 795, 823 |
| Bsp1286I | GDGCHC | 4 cut(s) | 97, 1321, 1444, 1612 |
| Bsp143I | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| Bsp19I | CCATGG | 1 cut(s) | 1302 |
| BspACI | CCGC | 2 cut(s) | 33, 218 |
| BspANI | GGCC | 6 cut(s) | 36, 309, 549, 591, 1252, 1620 |
| BspCNI | CTCAG | 5 cut(s) | 413, 481, 525, 834, 1497 |
| BspDI | ATCGAT | 1 cut(s) | 1117 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspLI | GGNNCC | 4 cut(s) | 388, 875, 1381, 1574 |
| BspMAI | CTGCAG | 1 cut(s) | 1666 |
| BspPI | GGATC | 3 cut(s) | 316, 1325, 1661 |
| BspT107I | GGYRCC | 1 cut(s) | 1572 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 5 cut(s) | 179, 336, 454, 795, 823 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BsrI | ACTGG | 5 cut(s) | 341, 615, 1543, 1617, 1639 |
| BssECI | CCNNGG | 3 cut(s) | 805, 1037, 1302 |
| BssMI | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| BssT1I | CCWWGG | 2 cut(s) | 805, 1302 |
| Bst2UI | CCWGG | 5 cut(s) | 311, 834, 1180, 1314, 1671 |
| Bst4CI | ACNGT | 5 cut(s) | 15, 724, 1038, 1088, 1446 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstBAI | YACGTR | 1 cut(s) | 728 |
| BstC8I | GCNNGC | 4 cut(s) | 735, 839, 1050, 1497 |
| BstDEI | CTNAG | 8 cut(s) | 400, 468, 512, 821, 1073, 1277, 1432, 1505 |
| BstDSI | CCRYGG | 2 cut(s) | 1037, 1302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 314 |
| BstF5I | GGATG | 5 cut(s) | 250, 310, 661, 984, 1423 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstH2I | RGCGCY | 1 cut(s) | 1410 |
| BstHHI | GCGC | 3 cut(s) | 218, 1409, 1586 |
| BstKTI | GATC | 7 cut(s) | 324, 409, 892, 984, 1333, 1561, 1669 |
| BstMAI | GTCTC | 7 cut(s) | 179, 336, 454, 795, 823, 1005, 1538 |
| BstMBI | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1058, 1106, 1304 |
| BstNI | CCWGG | 5 cut(s) | 311, 834, 1180, 1314, 1671 |
| BstNSI | RCATGY | 4 cut(s) | 668, 841, 972, 1052 |
| BstSCI | CCNGG | 7 cut(s) | 309, 444, 832, 1178, 1312, 1548, 1669 |
| BstSFI | CTRYAG | 4 cut(s) | 867, 1194, 1400, 1662 |
| BstSLI | GKGCMC | 3 cut(s) | 1321, 1444, 1612 |
| BstSNI | TACGTA | 1 cut(s) | 728 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 3 cut(s) | 511, 1096, 1310 |
| BstX2I | RGATCY | 3 cut(s) | 321, 1558, 1666 |
| BstYI | RGATCY | 3 cut(s) | 321, 1558, 1666 |
| Bsu15I | ATCGAT | 1 cut(s) | 1117 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1432 |
| BsuRI | GGCC | 6 cut(s) | 36, 309, 549, 591, 1252, 1620 |
| BsuTUI | ATCGAT | 1 cut(s) | 1117 |
| BtgI | CCRYGG | 2 cut(s) | 1037, 1302 |
| BtsCI | GGATG | 5 cut(s) | 250, 310, 661, 984, 1423 |
| BtsIMutI | CAGTG | 4 cut(s) | 622, 829, 964, 1610 |
| Cac8I | GCNNGC | 4 cut(s) | 735, 839, 1050, 1497 |
| CaiI | CAGNNNCTG | 1 cut(s) | 167 |
| CfoI | GCGC | 3 cut(s) | 218, 1409, 1586 |
| Cfr13I | GGNCC | 6 cut(s) | 164, 589, 874, 1380, 1619, 1628 |
| ClaI | ATCGAT | 1 cut(s) | 1117 |
| Csp6I | GTAC | 8 cut(s) | 234, 472, 528, 702, 720, 725, 1352, 1573 |
| CviQI | GTAC | 8 cut(s) | 234, 472, 528, 702, 720, 725, 1352, 1573 |
| DdeI | CTNAG | 8 cut(s) | 400, 468, 512, 821, 1073, 1277, 1432, 1505 |
| DpnI | GATC | 7 cut(s) | 323, 408, 891, 983, 1332, 1560, 1668 |
| DpnII | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| DraIII | CACNNNGTG | 1 cut(s) | 1616 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 171, 1635 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 171, 1635 |
| Eco105I | TACGTA | 1 cut(s) | 728 |
| Eco130I | CCWWGG | 2 cut(s) | 805, 1302 |
| Eco147I | AGGCCT | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 97 |
| Eco31I | GGTCTC | 5 cut(s) | 179, 336, 454, 795, 823 |
| Eco47I | GGWCC | 4 cut(s) | 164, 874, 1380, 1628 |
| Eco57I | CTGAAG | 3 cut(s) | 555, 882, 1074 |
| Eco81I | CCTNAGG | 1 cut(s) | 1432 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 314 |
| EcoO109I | RGGNCCY | 2 cut(s) | 164, 874 |
| EcoRI | GAATTC | 1 cut(s) | 1155 |
| EcoRII | CCWGG | 5 cut(s) | 309, 832, 1178, 1312, 1669 |
| EcoT14I | CCWWGG | 2 cut(s) | 805, 1302 |
| EcoT22I | ATGCAT | 3 cut(s) | 487, 1050, 1514 |
| EcoT38I | GRGCYC | 1 cut(s) | 97 |
| ErhI | CCWWGG | 2 cut(s) | 805, 1302 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1572, 1604 |
| FaqI | GGGAC | 2 cut(s) | 68, 1661 |
| FauNDI | CATATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 4 cut(s) | 34, 500, 1110, 1299 |
| FokI | GGATG | 5 cut(s) | 237, 317, 668, 991, 1430 |
| FriOI | GRGCYC | 1 cut(s) | 97 |
| Fsp4HI | GCNGC | 4 cut(s) | 34, 500, 1110, 1299 |
| FspBI | CTAG | 1 cut(s) | 1577 |
| GlaI | GCGC | 3 cut(s) | 217, 1408, 1585 |
| GluI | GCNGC | 4 cut(s) | 34, 500, 1110, 1299 |
| GsaI | CCCAGC | 2 cut(s) | 206, 940 |
| GsuI | CTGGAG | 3 cut(s) | 229, 1520, 1526 |
| HaeII | RGCGCY | 1 cut(s) | 1410 |
| HaeIII | GGCC | 6 cut(s) | 36, 309, 549, 591, 1252, 1620 |
| HapII | CCGG | 5 cut(s) | 143, 446, 1152, 1550, 1642 |
| HhaI | GCGC | 3 cut(s) | 218, 1409, 1586 |
| Hin6I | GCGC | 3 cut(s) | 216, 1407, 1584 |
| HinP1I | GCGC | 3 cut(s) | 216, 1407, 1584 |
| HindIII | AAGCTT | 2 cut(s) | 110, 773 |
| HinfI | GANTC | 5 cut(s) | 57, 1093, 1119, 1163, 1531 |
| HpaII | CCGG | 5 cut(s) | 143, 446, 1152, 1550, 1642 |
| HphI | GGTGA | 4 cut(s) | 767, 1054, 1115, 1420 |
| Hpy166II | GTNNAC | 3 cut(s) | 1319, 1442, 1610 |
| Hpy188I | TCNGA | 5 cut(s) | 150, 683, 1287, 1453, 1506 |
| Hpy8I | GTNNAC | 3 cut(s) | 1319, 1442, 1610 |
| HpyAV | CCTTC | 4 cut(s) | 530, 1227, 1517, 1574 |
| HpyCH4III | ACNGT | 5 cut(s) | 15, 724, 1038, 1088, 1446 |
| HpyCH4IV | ACGT | 3 cut(s) | 81, 727, 1246 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1058, 1106, 1304 |
| HpyF3I | CTNAG | 8 cut(s) | 400, 468, 512, 821, 1073, 1277, 1432, 1505 |
| HpySE526I | ACGT | 3 cut(s) | 81, 727, 1246 |
| HspAI | GCGC | 3 cut(s) | 216, 1407, 1584 |
| KpnI | GGTACC | 1 cut(s) | 1576 |
| Kzo9I | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| LmnI | GCTCC | 3 cut(s) | 110, 1484, 1545 |
| Lsp1109I | GCAGC | 3 cut(s) | 511, 1096, 1310 |
| LweI | GCATC | 5 cut(s) | 650, 674, 1035, 1096, 1499 |
| MaeI | CTAG | 1 cut(s) | 1577 |
| MaeII | ACGT | 3 cut(s) | 81, 727, 1246 |
| MaeIII | GTNAC | 1 cut(s) | 634 |
| MalI | GATC | 7 cut(s) | 323, 408, 891, 983, 1332, 1560, 1668 |
| MboI | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| MboII | GAAGA | 6 cut(s) | 844, 962, 976, 1195, 1532, 1568 |
| MflI | RGATCY | 3 cut(s) | 321, 1558, 1666 |
| MhlI | GDGCHC | 4 cut(s) | 97, 1321, 1444, 1612 |
| MluCI | AATT | 9 cut(s) | 130, 299, 811, 905, 989, 1155, 1422, 1711, 1735 |
| MlyI | GAGTC | 1 cut(s) | 1540 |
| MmeI | TCCRAC | 2 cut(s) | 85, 1358 |
| Mph1103I | ATGCAT | 3 cut(s) | 487, 1050, 1514 |
| MseI | TTAA | 5 cut(s) | 270, 495, 1227, 1490, 1741 |
| MslI | CAYNNNNRTG | 5 cut(s) | 597, 1019, 1605, 1692, 1694 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 5 cut(s) | 143, 446, 1152, 1550, 1642 |
| MspR9I | CCNGG | 7 cut(s) | 311, 446, 834, 1180, 1314, 1550, 1671 |
| Mva1269I | GAATGC | 1 cut(s) | 487 |
| MvaI | CCWGG | 5 cut(s) | 311, 834, 1180, 1314, 1671 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1058, 1106, 1304 |
| NciI | CCSGG | 2 cut(s) | 446, 1550 |
| NcoI | CCATGG | 1 cut(s) | 1302 |
| NdeI | CATATG | 1 cut(s) | 411 |
| NdeII | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| NlaIV | GGNNCC | 4 cut(s) | 388, 875, 1381, 1574 |
| NmeAIII | GCCGAG | 1 cut(s) | 1087 |
| NmuCI | GTSAC | 1 cut(s) | 634 |
| NsiI | ATGCAT | 3 cut(s) | 487, 1050, 1514 |
| NspI | RCATGY | 4 cut(s) | 668, 841, 972, 1052 |
| PaeI | GCATGC | 2 cut(s) | 841, 1052 |
| PceI | AGGCCT | 1 cut(s) | 549 |
| PciI | ACATGT | 2 cut(s) | 664, 968 |
| PctI | GAATGC | 1 cut(s) | 487 |
| PfeI | GAWTC | 4 cut(s) | 57, 1093, 1119, 1163 |
| PkrI | GCNGC | 4 cut(s) | 35, 501, 1111, 1300 |
| PleI | GAGTC | 1 cut(s) | 1539 |
| PpsI | GAGTC | 1 cut(s) | 1539 |
| Ppu21I | YACGTR | 1 cut(s) | 728 |
| PpuMI | RGGWCCY | 2 cut(s) | 164, 874 |
| PscI | ACATGT | 2 cut(s) | 664, 968 |
| Psp5II | RGGWCCY | 2 cut(s) | 164, 874 |
| Psp6I | CCWGG | 5 cut(s) | 309, 832, 1178, 1312, 1669 |
| PspFI | CCCAGC | 2 cut(s) | 202, 936 |
| PspGI | CCWGG | 5 cut(s) | 309, 832, 1178, 1312, 1669 |
| PspN4I | GGNNCC | 4 cut(s) | 388, 875, 1381, 1574 |
| PspPI | GGNCC | 6 cut(s) | 164, 589, 874, 1380, 1619, 1628 |
| PspPPI | RGGWCCY | 2 cut(s) | 164, 874 |
| PstI | CTGCAG | 1 cut(s) | 1666 |
| PstNI | CAGNNNCTG | 1 cut(s) | 167 |
| PsuI | RGATCY | 3 cut(s) | 321, 1558, 1666 |
| RsaI | GTAC | 8 cut(s) | 235, 473, 529, 703, 721, 726, 1353, 1574 |
| RsaNI | GTAC | 8 cut(s) | 234, 472, 528, 702, 720, 725, 1352, 1573 |
| RseI | CAYNNNNRTG | 5 cut(s) | 597, 1019, 1605, 1692, 1694 |
| SaqAI | TTAA | 5 cut(s) | 270, 495, 1227, 1490, 1741 |
| SatI | GCNGC | 4 cut(s) | 34, 500, 1110, 1299 |
| Sau3AI | GATC | 7 cut(s) | 321, 406, 889, 981, 1330, 1558, 1666 |
| Sau96I | GGNCC | 6 cut(s) | 164, 589, 874, 1380, 1619, 1628 |
| ScaI | AGTACT | 1 cut(s) | 721 |
| SchI | GAGTC | 1 cut(s) | 1540 |
| ScrFI | CCNGG | 7 cut(s) | 311, 446, 834, 1180, 1314, 1550, 1671 |
| SduI | GDGCHC | 4 cut(s) | 97, 1321, 1444, 1612 |
| SfaNI | GCATC | 5 cut(s) | 650, 674, 1035, 1096, 1499 |
| SfcI | CTRYAG | 4 cut(s) | 867, 1194, 1400, 1662 |
| SinI | GGWCC | 4 cut(s) | 164, 874, 1380, 1628 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 597, 1019, 1605, 1692, 1694 |
| SmlI | CTYRAG | 6 cut(s) | 420, 494, 566, 650, 793, 893 |
| SmoI | CTYRAG | 6 cut(s) | 420, 494, 566, 650, 793, 893 |
| SnaBI | TACGTA | 1 cut(s) | 728 |
| SphI | GCATGC | 2 cut(s) | 841, 1052 |
| Sse9I | AATT | 9 cut(s) | 130, 299, 811, 905, 989, 1155, 1422, 1711, 1735 |
| SseBI | AGGCCT | 1 cut(s) | 549 |
| SsiI | CCGC | 2 cut(s) | 33, 218 |
| SspMI | CTAG | 1 cut(s) | 1577 |
| StuI | AGGCCT | 1 cut(s) | 549 |
| StyD4I | CCNGG | 7 cut(s) | 309, 444, 832, 1178, 1312, 1548, 1669 |
| StyI | CCWWGG | 2 cut(s) | 805, 1302 |
| TaaI | ACNGT | 5 cut(s) | 15, 724, 1038, 1088, 1446 |
| TaiI | ACGT | 3 cut(s) | 84, 730, 1249 |
| TaqI | TCGA | 5 cut(s) | 1000, 1081, 1117, 1357, 1718 |
| TaqII | GACCGA | 1 cut(s) | 267 |
| TasI | AATT | 9 cut(s) | 130, 299, 811, 905, 989, 1155, 1422, 1711, 1735 |
| TatI | WGTACW | 3 cut(s) | 233, 471, 719 |
| TauI | GCSGC | 1 cut(s) | 36 |
| TfiI | GAWTC | 4 cut(s) | 57, 1093, 1119, 1163 |
| Tru1I | TTAA | 5 cut(s) | 270, 495, 1227, 1490, 1741 |
| Tru9I | TTAA | 5 cut(s) | 270, 495, 1227, 1490, 1741 |
| TscAI | CASTG | 4 cut(s) | 622, 829, 964, 1617 |
| TseFI | GTSAC | 1 cut(s) | 634 |
| TseI | GCWGC | 3 cut(s) | 499, 1109, 1298 |
| Tsp45I | GTSAC | 1 cut(s) | 634 |
| TspDTI | ATGAA | 7 cut(s) | 256, 573, 1160, 1251, 1482, 1704, 1706 |
| TspGWI | ACGGA | 1 cut(s) | 622 |
| TspRI | CASTG | 4 cut(s) | 622, 829, 964, 1617 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| VneI | GTGCAC | 3 cut(s) | 1317, 1440, 1608 |
| VpaK11BI | GGWCC | 4 cut(s) | 164, 874, 1380, 1628 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 314 |
| XapI | RAATTY | 4 cut(s) | 905, 1155, 1422, 1711 |
| XceI | RCATGY | 4 cut(s) | 668, 841, 972, 1052 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 348 |
| XspI | CTAG | 1 cut(s) | 1577 |
| ZrmI | AGTACT | 1 cut(s) | 721 |
| Zsp2I | ATGCAT | 3 cut(s) | 487, 1050, 1514 |