Rmu_co8265599.1_g000001

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8265599.1
OG0003028
Physical Location & Seq
Forward (+)
1 .. 817
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8265599.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
aacttcaaagcagccatggctgttcctggtgcgcttggtcttgatccaactattgcaaactcggtacatcgagtaataaataagggggttggttccattttaccatctggactacagagcgccattttggatggaattttcatcttaggtcgtgcacagttatcagaaactcttttgaatgaaaacaacccagttggagctttaaggcttgctaatctgagacgtatatttgaagaaggaaagagtctccagctccagttcccggcagaagatcttggtttcaggtacctagaaggtgcacttggtcctgaccataatggtgcactgggtggtccagatggacctaccggtcgccggagggactatgttcctactgcagatccaggttcaaggcttcctcacatgaatgtgaggatattgtcaaattca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

143

Amino Acids

15.16

Weight (kDa)

8.4

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 285
AclWI GGATC 2 cut(s) 38, 374
AcsI RAATTY 2 cut(s) 135, 424
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 2 cut(s) 66, 287
AfiI CCNNNNNNNGG 2 cut(s) 262, 354
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 4 cut(s) 7, 178, 233, 390
AjnI CCWGG 2 cut(s) 25, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 200, 253
AluI AGCT 2 cut(s) 200, 253
Alw21I GWGCWC 3 cut(s) 157, 301, 325
Alw26I GTCTC 2 cut(s) 214, 251
Alw44I GTGCAC 3 cut(s) 153, 297, 321
AlwI GGATC 2 cut(s) 38, 374
ApaLI GTGCAC 3 cut(s) 153, 297, 321
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 135, 424
AsiGI ACCGGT 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 285
AspLEI GCGC 2 cut(s) 34, 122
AspS9I GGNCC 3 cut(s) 305, 332, 341
AsuC2I CCSGG 1 cut(s) 263
AvaII GGWCC 3 cut(s) 305, 332, 341
BaeGI GKGCMC 3 cut(s) 157, 301, 325
BanI GGYRCC 1 cut(s) 285
Bbv12I GWGCWC 3 cut(s) 157, 301, 325
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 112, 125, 332
BciT130I CCWGG 2 cut(s) 27, 384
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 214, 251
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 113, 375
BfoI RGCGCY 1 cut(s) 123
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 27, 263, 384
Bme18I GGWCC 3 cut(s) 305, 332, 341
BmgT120I GGNCC 3 cut(s) 305, 332, 341
BmiI GGNNCC 2 cut(s) 94, 287
BmrFI CCNGG 3 cut(s) 27, 263, 384
BmrI ACTGGG 2 cut(s) 185, 335
BmuI ACTGGG 2 cut(s) 185, 335
BpmI CTGGAG 2 cut(s) 233, 239
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 354
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 191, 256, 330
BseBI CCWGG 2 cut(s) 27, 384
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 262, 354
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 3 cut(s) 191, 256, 330
BseSI GKGCMC 3 cut(s) 157, 301, 325
BseXI GCAGC 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 285
BshTI ACCGGT 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 3 cut(s) 157, 301, 325
BsiSI CCGG 3 cut(s) 263, 348, 355
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 262, 354
BsmAI GTCTC 2 cut(s) 214, 251
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 157, 301, 325
Bsp143I GATC 3 cut(s) 43, 271, 379
Bsp19I CCATGG 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 94, 287
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 38, 374
BspT107I GGYRCC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 3 cut(s) 191, 256, 330
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 43, 271, 379
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 27, 384
Bst4CI ACNGT 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 145, 218
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 34, 122
BstKTI GATC 3 cut(s) 46, 274, 382
BstMAI GTCTC 2 cut(s) 214, 251
BstMBI GATC 3 cut(s) 43, 271, 379
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 27, 384
BstSCI CCNGG 3 cut(s) 25, 261, 382
BstSFI CTRYAG 2 cut(s) 113, 375
BstSLI GKGCMC 3 cut(s) 157, 301, 325
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 271, 379
BstYI RGATCY 2 cut(s) 271, 379
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 2 cut(s) 34, 122
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 305, 332, 341
Csp6I GTAC 2 cut(s) 65, 286
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 2 cut(s) 16, 403
CviJI RGCY 6 cut(s) 14, 20, 200, 208, 253, 394
CviKI_1 RGCY 6 cut(s) 14, 20, 200, 208, 253, 394
CviQI GTAC 2 cut(s) 65, 286
DdeI CTNAG 2 cut(s) 145, 218
DpnI GATC 3 cut(s) 45, 273, 381
DpnII GATC 3 cut(s) 43, 271, 379
DraIII CACNNNGTG 1 cut(s) 329
DrdI GACNNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 3 cut(s) 305, 332, 341
EcoRII CCWGG 2 cut(s) 25, 382
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 19, 406
FaiI YATR 5 cut(s) 17, 227, 315, 366, 404
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 374
FatI CATG 2 cut(s) 15, 402
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 290
GlaI GCGC 2 cut(s) 33, 121
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 2 cut(s) 233, 239
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 3 cut(s) 263, 348, 355
HhaI GCGC 2 cut(s) 34, 122
Hin1II CATG 2 cut(s) 19, 406
Hin6I GCGC 2 cut(s) 32, 120
HinP1I GCGC 2 cut(s) 32, 120
HinfI GANTC 1 cut(s) 244
HpaII CCGG 3 cut(s) 263, 348, 355
Hpy166II GTNNAC 3 cut(s) 155, 299, 323
Hpy188I TCNGA 2 cut(s) 166, 219
Hpy188III TCNNGA 4 cut(s) 41, 108, 308, 335
Hpy8I GTNNAC 3 cut(s) 155, 299, 323
HpyAV CCTTC 2 cut(s) 230, 287
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 5 cut(s) 56, 155, 299, 323, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 145, 218
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 19, 406
HspAI GCGC 2 cut(s) 32, 120
KpnI GGTACC 1 cut(s) 289
Kzo9I GATC 3 cut(s) 43, 271, 379
LmnI GCTCC 2 cut(s) 197, 258
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 223
MalI GATC 3 cut(s) 45, 273, 381
MboI GATC 3 cut(s) 43, 271, 379
MboII GAAGA 2 cut(s) 245, 281
MflI RGATCY 2 cut(s) 271, 379
MhlI GDGCHC 3 cut(s) 157, 301, 325
MluCI AATT 2 cut(s) 135, 424
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 2 cut(s) 71, 175
MnlI CCTC 3 cut(s) 351, 405, 408
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 3 cut(s) 318, 405, 407
MspI CCGG 3 cut(s) 263, 348, 355
MspR9I CCNGG 3 cut(s) 27, 263, 384
MvaI CCWGG 2 cut(s) 27, 384
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 43, 271, 379
NlaIII CATG 2 cut(s) 19, 406
NlaIV GGNNCC 2 cut(s) 94, 287
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 25, 382
PspGI CCWGG 2 cut(s) 25, 382
PspN4I GGNNCC 2 cut(s) 94, 287
PspPI GGNCC 3 cut(s) 305, 332, 341
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 2 cut(s) 271, 379
RsaI GTAC 2 cut(s) 66, 287
RsaNI GTAC 2 cut(s) 65, 286
RseI CAYNNNNRTG 3 cut(s) 318, 405, 407
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 43, 271, 379
Sau96I GGNCC 3 cut(s) 305, 332, 341
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 3 cut(s) 27, 263, 384
SduI GDGCHC 3 cut(s) 157, 301, 325
SetI ASST 9 cut(s) 151, 202, 226, 255, 287, 291, 298, 346, 388
SfcI CTRYAG 2 cut(s) 113, 375
SinI GGWCC 3 cut(s) 305, 332, 341
SmiMI CAYNNNNRTG 3 cut(s) 318, 405, 407
Sse9I AATT 2 cut(s) 135, 424
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 3 cut(s) 25, 261, 382
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 135, 424
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 130, 195, 419
TspRI CASTG 1 cut(s) 330
VneI GTGCAC 3 cut(s) 153, 297, 321
VpaK11BI GGWCC 3 cut(s) 305, 332, 341
XapI RAATTY 2 cut(s) 135, 424
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.