Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041255.1

Orthogroup ID

OG0003028

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1760

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 890 bp

tacccatctgcctacgtccccacaagagccctatcatgctccaagcttttcagcaatggcgacaattctgtgcttccggttttgatagtcggtgcaggacctgtgggtctcgttctttccatactcctaacaaagctgggggtcaaatgcgcggttttggagaaaagtacaagtttctccagacatccacaggcacacttcattaacaatcggtcgatggaggtatttcgcaaattggatggcctggcagaggagatccagaggtctcaaccaccagttgatttgtggagaaagtttatatattgcacttcgctctctggttccattcttggctcagtagatcatatgcaacctcaagattttgagcaagttgtcagcccggtctctgttgcacacttctctcagtacaaactgaatgcattactacttaggcagcttgaaaatctcagcttcaagtattgtacccctgaagggttgaaaggccttgaccatgaaccccttgaggcaaggcaaatattgatgggccatgagtgtgtttccatcaatgccagtgatgatattatttccgtgactgcatcttttctcaaggatgggaaacatgtggagaggaatatcagatgcaatatgattgtaggtacagatggtgctggaagtactgtacgtaagctggctggtatagatatgagaggtgaaaaggacttgcagaagcttgtgagtgtccatttcttgagtagagaccttggaaattacttgctcagtgagagaccaggcatgctgttttttatcttcaatactgaagctataggggttcttgttgcacatgatctcaagcaaggggaatttgtattgcagataccattttatccaccccagcaaaaccttgaagattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

296

Amino Acids

32.83

Weight (kDa)

6.54

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24340
fragaria_vesca	FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220 FvH4_4g24220
malus_domestica	MD13G1113200.v1.1 MD16G1112300.v1.1
prunus_persica	Prupe.1G232900_v2.0.a1
pyrus_communis	pycom13g09860
rosa_chinensis	RchiOBHm_Chr4g0431061
rosa_laevigata	RLG00000006928 RLG00000016399
rosa_multiflora	Rmu_co8265599.1_g000001 Rmu_sc0003592.1_g000008 Rmu_sc0010203.1_g000008 Rmu_sc0041255.1_g000001 Rmu_sc0043112.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114870 Rroxscaffold_2G00148110 Rroxscaffold_5G00372680
rosa_rugosa	Rorug02G0035800 Rorug02G0035800 Rorug02G0035900 Rorug02G0035900 Rorug04G0247900
rosa_samantha	Rh2DG080900 Rh2DG081100 Rh4AG304600 Rh4BG311800 Rh4CG328100 Rh4DG308300
rosa_wichuraiana	Rw4G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	2 cut(s)	489, 816
AfaI	GTAC	6 cut(s)	169, 407, 463, 637, 655, 660
AfiI	CCNNNNNNNGG	2 cut(s)	250, 471
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	5 cut(s)	440, 454, 478, 790, 884
AjnI	CCWGG	2 cut(s)	243, 766
AluBI	AGCT	7 cut(s)	46, 136, 436, 450, 667, 709, 800
AluI	AGCT	7 cut(s)	46, 136, 436, 450, 667, 709, 800
Alw26I	GTCTC	5 cut(s)	113, 270, 388, 729, 757
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	241, 481, 523
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	98, 523
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	7 cut(s)	13, 211, 233, 514, 548, 584, 635
BciT130I	CCWGG	2 cut(s)	245, 768
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	5 cut(s)	113, 270, 388, 729, 757
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	3 cut(s)	245, 380, 768
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 523
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	3 cut(s)	245, 380, 768
BmsI	GCATC	2 cut(s)	584, 608
BpmI	CTGGAG	1 cut(s)	163
BpuEI	CTTGAG	5 cut(s)	339, 521, 569, 748, 812
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	662
BsaI	GGTCTC	5 cut(s)	113, 270, 388, 729, 757
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 471
Bse1I	ACTGG	2 cut(s)	275, 549
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	245, 768
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	3 cut(s)	184, 244, 595
BseLI	CCNNNNNNNGG	2 cut(s)	250, 471
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	348, 416, 460, 769
BseNI	ACTGG	2 cut(s)	275, 549
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	2 cut(s)	136, 870
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	243, 483, 525
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	77, 380
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	250, 471
BsmAI	GTCTC	5 cut(s)	113, 270, 388, 729, 757
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	243, 483, 525
Bso31I	GGTCTC	5 cut(s)	113, 270, 388, 729, 757
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	255, 340, 823
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	243, 483, 525
BspCNI	CTCAG	4 cut(s)	347, 415, 459, 768
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	5 cut(s)	113, 270, 388, 729, 757
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	275, 549
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	3 cut(s)	255, 340, 823
BssT1I	CCWWGG	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	245, 768
Bst4CI	ACNGT	1 cut(s)	658
BstBAI	YACGTR	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	669, 773
BstDEI	CTNAG	5 cut(s)	334, 402, 428, 446, 755
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	184, 244, 595
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	258, 343, 826
BstMAI	GTCTC	5 cut(s)	113, 270, 388, 729, 757
BstMBI	GATC	3 cut(s)	255, 340, 823
BstMCI	CGRYCG	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	245, 768
BstNSI	RCATGY	2 cut(s)	602, 775
BstSCI	CCNGG	3 cut(s)	243, 378, 766
BstSFI	CTRYAG	1 cut(s)	801
BstSNI	TACGTA	1 cut(s)	662
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	243, 483, 525
BtsCI	GGATG	3 cut(s)	184, 244, 595
BtsIMutI	CAGTG	2 cut(s)	556, 763
Cac8I	GCNNGC	2 cut(s)	669, 773
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	98, 523
Csp6I	GTAC	6 cut(s)	168, 406, 462, 636, 654, 659
CviAII	CATG	6 cut(s)	36, 491, 527, 599, 772, 821
CviQI	GTAC	6 cut(s)	168, 406, 462, 636, 654, 659
DdeI	CTNAG	5 cut(s)	334, 402, 428, 446, 755
DpnI	GATC	3 cut(s)	257, 342, 825
DpnII	GATC	3 cut(s)	255, 340, 823
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
Eco105I	TACGTA	1 cut(s)	662
Eco130I	CCWWGG	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	5 cut(s)	113, 270, 388, 729, 757
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	489, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	243, 766
EcoT14I	CCWWGG	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	6 cut(s)	39, 494, 530, 602, 775, 824
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	6 cut(s)	35, 490, 526, 598, 771, 820
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	3 cut(s)	171, 251, 602
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	434
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	2 cut(s)	140, 874
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	3 cut(s)	243, 483, 525
HapII	CCGG	2 cut(s)	77, 380
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	6 cut(s)	39, 494, 530, 602, 775, 824
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	44, 707
HpaII	CCGG	2 cut(s)	77, 380
HphI	GGTGA	1 cut(s)	701
Hpy188I	TCNGA	1 cut(s)	617
Hpy188III	TCNNGA	4 cut(s)	180, 259, 356, 727
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	15, 661
HpyF3I	CTNAG	5 cut(s)	334, 402, 428, 446, 755
HpySE526I	ACGT	2 cut(s)	15, 661
Hsp92II	CATG	6 cut(s)	39, 494, 530, 602, 775, 824
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	255, 340, 823
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	584, 608
MaeII	ACGT	2 cut(s)	15, 661
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	3 cut(s)	257, 342, 825
MboI	GATC	3 cut(s)	255, 340, 823
MboII	GAAGA	1 cut(s)	778
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	64, 233, 745, 839
MnlI	CCTC	7 cut(s)	214, 244, 255, 363, 496, 600, 680
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	2 cut(s)	77, 380
MspR9I	CCNGG	3 cut(s)	245, 380, 768
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	245, 768
MvnI	CGCG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	3 cut(s)	255, 340, 823
NlaIII	CATG	6 cut(s)	39, 494, 530, 602, 775, 824
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	2 cut(s)	602, 775
PaeI	GCATGC	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	483
PciI	ACATGT	1 cut(s)	598
PctI	GAATGC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	435
Ppu21I	YACGTR	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	98
PscI	ACATGT	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	243, 766
PspFI	CCCAGC	2 cut(s)	136, 870
PspGI	CCWGG	2 cut(s)	243, 766
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	98, 523
PspPPI	RGGWCCY	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	6 cut(s)	169, 407, 463, 637, 655, 660
RsaNI	GTAC	6 cut(s)	168, 406, 462, 636, 654, 659
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	3 cut(s)	255, 340, 823
Sau96I	GGNCC	2 cut(s)	98, 523
ScaI	AGTACT	1 cut(s)	655
ScrFI	CCNGG	3 cut(s)	245, 380, 768
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	584, 608
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	5 cut(s)	354, 500, 584, 727, 827
SmoI	CTYRAG	5 cut(s)	354, 500, 584, 727, 827
SnaBI	TACGTA	1 cut(s)	662
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	4 cut(s)	64, 233, 745, 839
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	243, 378, 766
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	2 cut(s)	18, 664
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	64, 233, 745, 839
TatI	WGTACW	3 cut(s)	167, 405, 653
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	556, 763
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	190, 507
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	2 cut(s)	556, 763
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	839
XceI	RCATGY	2 cut(s)	602, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.