Rroxscaffold_5G00372670

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008358
Physical Location & Seq
Reverse (-)
54061977 .. 54065361
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372670.1

Sequence Viewer

Length: 1146 bp
ATGAGATCCATAGAGGATAAGGAGATTTCTGGAGGCAGTGCTATAAGTTTTGAGTTTCACAAACAGAATGGAGGAGGAGCTAACCGCACTAGTGGCAACACTACTTCCTCCCATCATCATAGAACAGCCTTGGGAAAGTTACCAACACCATCAAAATGGGATGATGCACAGAAATGGCTAGTGGGATTGTCAAGAGGAGTAGACAAAACGCAGTCCAAGACCAAACCCAGAAACTCAAATGCAGATGACTTGAGGCTCATAGCTTCTGTGCCGCAGAAGGAGCAGGACTACTCGAGCGGAGACGAGGATGGAGAAGACGATAGACACGGAAAAGAAGCAAATGGGTGTTCTGGAACTGCAGTGGCAAATCATTACGATGTGGAGACGAAGAAAGTGGACTGTGATGACTCGGTTTGGAGGAGCAACAAGCCTGTGGAGAACCCAACTTCAGCTGCTGCCATGAGATCCATATGTTTGAGGGACATGGGAACTGAGATGACACCAATTGCAAGCCAAGAGCCTTCGAGAACCGGCACGCCTATCCGGGCCACAACTCCGGCTGCAAGGAGCCCGATATCTTCGGGATCCTCGACTCCGGTGAGGGCATGTCAGCATGGGATGCAAGCTAGCCAGCAGGGGTGTCAAGGGTCTGGTGATAATGGTAGAAGTACTCATGAGGGCATTCCTTGTGGGAGAGGGAGTGGCGGAAGCAATAAAAGGTATGTGGAGGAATCAAATGTGTGCAAGAATAGTATGCCTGAGAATCAGAGTTCAGATGAAGGTAGGAAGCCAAATCCTCTAGAAACTAGAGCAATGGCTTGGGATGAGGCAGAACGCGCTAAATACATGGCAAGGTATAAGCGTGAAGAGGTAAAGATACAAGCCTGGGAAAACCATGAGAAGAGGAAAGCTGAGATGGAAATGAGAAAAATGGAGGTGAAGGCTGAAAGAATGAAATCTCGGGCCCAAGAAAAGTTAACAAATAAACTTGCTGCAACGAGAAGAATAGCCGAAGAAAAGAGGGCTAATGCAGAGGCCAAACTCAATGAAAAAGCTTTGAAGACGTCGGAAAAGGCAGATTACATAAGGAGGACTGGTCATTTGCCCTCTTCATTCTCTTGCAAGTTGCCTTCTCTTTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

381

Amino Acids

42.03

Weight (kDa)

9.08

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 268 - 370 3e-34 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 837
AciI CCGC 4 cut(s) 85, 272, 297, 705
AclWI GGATC 3 cut(s) 459, 579, 592
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 1064
AfaI GTAC 1 cut(s) 670
AgsI TTSAA 1 cut(s) 1060
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 1 cut(s) 884
AluBI AGCT 6 cut(s) 80, 263, 452, 626, 911, 1055
AluI AGCT 6 cut(s) 80, 263, 452, 626, 911, 1055
Alw26I GTCTC 2 cut(s) 294, 377
AlwI GGATC 3 cut(s) 459, 579, 592
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 2 cut(s) 292, 960
AoxI GGCC 3 cut(s) 546, 963, 1035
ApaI GGGCCC 1 cut(s) 967
ApeKI GCWGC 4 cut(s) 452, 455, 560, 992
ArsI GACNNNNNNTTYG 2 cut(s) 1084, 1116
AspLEI GCGC 1 cut(s) 839
AspS9I GGNCC 3 cut(s) 546, 963, 964
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 3 cut(s) 610, 665, 949
AsuNHI GCTAGC 1 cut(s) 626
AvaI CYCGRG 2 cut(s) 292, 960
BaeGI GKGCMC 1 cut(s) 967
BamHI GGATCC 1 cut(s) 584
BanII GRGCYC 2 cut(s) 572, 967
BbsI GAAGAC 2 cut(s) 321, 1067
BbvI GCAGC 4 cut(s) 439, 442, 547, 979
BccI CCATC 4 cut(s) 120, 157, 302, 910
BciT130I CCWGG 1 cut(s) 886
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 2 cut(s) 294, 377
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 5 cut(s) 90, 179, 627, 800, 807
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 5 cut(s) 272, 453, 456, 561, 993
BlsI GCNGC 5 cut(s) 273, 454, 457, 562, 994
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 545, 886
BmeT110I CYCGRG 2 cut(s) 292, 960
BmgT120I GGNCC 3 cut(s) 546, 963, 964
BmiI GGNNCC 3 cut(s) 569, 586, 965
BmrFI CCNGG 2 cut(s) 545, 886
BmsI GCATC 2 cut(s) 154, 609
BmtI GCTAGC 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 321, 1067
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 1064
BsaJI CCNNGG 2 cut(s) 129, 885
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 4 cut(s) 685, 715, 1081, 1111
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 1099
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 886
BseDI CCNNGG 2 cut(s) 129, 885
BseGI GGATG 4 cut(s) 166, 313, 624, 829
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 3 cut(s) 483, 750, 903
BseNI ACTGG 1 cut(s) 1099
BseRI GAGGAG 4 cut(s) 87, 90, 210, 433
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 4 cut(s) 439, 442, 547, 979
Bsh1236I CGCG 1 cut(s) 837
BshFI GGCC 3 cut(s) 548, 965, 1037
BsiHKCI CYCGRG 2 cut(s) 292, 960
BsiSI CCGG 4 cut(s) 531, 544, 557, 596
BslFI GGGAC 1 cut(s) 494
BsmAI GTCTC 2 cut(s) 294, 377
BsmBI CGTCTC 2 cut(s) 294, 377
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 3 cut(s) 548, 965, 1037
BsoBI CYCGRG 2 cut(s) 292, 960
Bsp120I GGGCCC 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 572, 967
Bsp143I GATC 3 cut(s) 5, 464, 584
BspACI CCGC 4 cut(s) 85, 272, 297, 705
BspANI GGCC 3 cut(s) 548, 965, 1037
BspCNI CTCAG 3 cut(s) 484, 751, 904
BspFNI CGCG 1 cut(s) 837
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 569, 586, 965
BspMAI CTGCAG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 3 cut(s) 459, 579, 592
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 1099
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 129, 885
BssMI GATC 3 cut(s) 5, 464, 584
BssNI GRCGYC 1 cut(s) 1064
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 886
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 3 cut(s) 861, 896, 1114
BstACI GRCGYC 1 cut(s) 1064
BstAPI GCANNNNNTGC 1 cut(s) 619
BstC8I GCNNGC 5 cut(s) 511, 536, 624, 628, 632
BstDEI CTNAG 3 cut(s) 492, 759, 912
BstF5I GGATG 4 cut(s) 166, 313, 624, 829
BstFNI CGCG 1 cut(s) 837
BstHHI GCGC 1 cut(s) 839
BstKTI GATC 3 cut(s) 8, 467, 587
BstMAI GTCTC 2 cut(s) 294, 377
BstMBI GATC 3 cut(s) 5, 464, 584
BstMWI GCNNNNNNNGC 4 cut(s) 93, 280, 619, 836
BstNI CCWGG 1 cut(s) 886
BstNSI RCATGY 1 cut(s) 609
BstSCI CCNGG 2 cut(s) 543, 884
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 967
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 4 cut(s) 439, 442, 547, 979
BstV2I GAAGAC 2 cut(s) 321, 1067
BstX2I RGATCY 3 cut(s) 5, 464, 584
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 3 cut(s) 5, 464, 584
BsuRI GGCC 3 cut(s) 548, 965, 1037
BtsCI GGATG 4 cut(s) 166, 313, 624, 829
BtsI GCAGTG 2 cut(s) 43, 366
BtsIMutI CAGTG 2 cut(s) 43, 366
Cac8I GCNNGC 5 cut(s) 511, 536, 624, 628, 632
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 839
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 546, 963, 964
Csp6I GTAC 1 cut(s) 669
CviAII CATG 7 cut(s) 460, 484, 606, 614, 674, 847, 896
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 3 cut(s) 492, 759, 912
DpnI GATC 3 cut(s) 7, 466, 586
DpnII GATC 3 cut(s) 5, 464, 584
Eam1104I CTCTTC 3 cut(s) 861, 896, 1114
EarI CTCTTC 3 cut(s) 861, 896, 1114
EciI GGCGGA 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 572, 967
Eco32I GATATC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 2 cut(s) 292, 960
EcoRII CCWGG 1 cut(s) 884
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 572, 967
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 2 cut(s) 294, 377
FaeI CATG 7 cut(s) 463, 487, 609, 617, 677, 850, 899
FaqI GGGAC 1 cut(s) 494
FatI CATG 7 cut(s) 459, 483, 605, 613, 673, 846, 895
FauNDI CATATG 1 cut(s) 470
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 272, 453, 456, 561, 993
FokI GGATG 4 cut(s) 173, 320, 631, 836
FriOI GRGCYC 2 cut(s) 572, 967
Fsp4HI GCNGC 5 cut(s) 272, 453, 456, 561, 993
FspBI CTAG 5 cut(s) 90, 179, 627, 800, 807
GlaI GCGC 1 cut(s) 838
GluI GCNGC 5 cut(s) 272, 453, 456, 561, 993
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 3 cut(s) 548, 965, 1037
HapII CCGG 4 cut(s) 531, 544, 557, 596
HhaI GCGC 1 cut(s) 839
Hin1I GRCGYC 1 cut(s) 1064
Hin1II CATG 7 cut(s) 463, 487, 609, 617, 677, 850, 899
Hin6I GCGC 1 cut(s) 837
HinP1I GCGC 1 cut(s) 837
HincII GTYRAC 1 cut(s) 978
HindII GTYRAC 1 cut(s) 978
HindIII AAGCTT 1 cut(s) 1053
HinfI GANTC 4 cut(s) 407, 592, 731, 763
HpaI GTTAAC 1 cut(s) 978
HpaII CCGG 4 cut(s) 531, 544, 557, 596
HphI GGTGA 3 cut(s) 610, 665, 949
Hpy166II GTNNAC 3 cut(s) 202, 397, 978
Hpy188I TCNGA 3 cut(s) 768, 775, 1069
Hpy188III TCNNGA 7 cut(s) 30, 192, 351, 525, 582, 674, 800
Hpy8I GTNNAC 3 cut(s) 202, 397, 978
Hpy99I CGWCG 1 cut(s) 1069
HpyAV CCTTC 5 cut(s) 271, 531, 773, 934, 1140
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 280, 619, 836
HpyF3I CTNAG 3 cut(s) 492, 759, 912
HpySE526I ACGT 1 cut(s) 1064
Hsp92I GRCGYC 1 cut(s) 1064
Hsp92II CATG 7 cut(s) 463, 487, 609, 617, 677, 850, 899
HspAI GCGC 1 cut(s) 837
KspAI GTTAAC 1 cut(s) 978
Kzo9I GATC 3 cut(s) 5, 464, 584
LmnI GCTCC 4 cut(s) 77, 280, 420, 567
Lsp1109I GCAGC 4 cut(s) 439, 442, 547, 979
LweI GCATC 2 cut(s) 154, 609
MaeI CTAG 5 cut(s) 90, 179, 627, 800, 807
MaeII ACGT 1 cut(s) 1064
MaeIII GTNAC 1 cut(s) 138
MalI GATC 3 cut(s) 7, 466, 586
MbiI CCGCTC 1 cut(s) 297
MboI GATC 3 cut(s) 5, 464, 584
MboII GAAGA 9 cut(s) 326, 400, 570, 878, 913, 1014, 1025, 1072, 1101
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 3 cut(s) 5, 464, 584
MhlI GDGCHC 2 cut(s) 572, 967
MluCI AATT 1 cut(s) 504
MlyI GAGTC 2 cut(s) 401, 586
MmeI TCCRAC 1 cut(s) 1047
MseI TTAA 1 cut(s) 977
MslI CAYNNNNRTG 3 cut(s) 154, 172, 375
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 4 cut(s) 531, 544, 557, 596
MspR9I CCNGG 2 cut(s) 545, 886
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 1 cut(s) 886
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 4 cut(s) 93, 280, 619, 836
NciI CCSGG 1 cut(s) 545
NdeI CATATG 1 cut(s) 470
NdeII GATC 3 cut(s) 5, 464, 584
NheI GCTAGC 1 cut(s) 626
NlaIII CATG 7 cut(s) 463, 487, 609, 617, 677, 850, 899
NlaIV GGNNCC 3 cut(s) 569, 586, 965
NspI RCATGY 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 292
PagI TCATGA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 731, 763
PkrI GCNGC 5 cut(s) 273, 454, 457, 562, 994
PleI GAGTC 2 cut(s) 401, 586
PpsI GAGTC 2 cut(s) 401, 586
Psp6I CCWGG 1 cut(s) 884
PspGI CCWGG 1 cut(s) 884
PspN4I GGNNCC 3 cut(s) 569, 586, 965
PspOMI GGGCCC 1 cut(s) 963
PspPI GGNCC 3 cut(s) 546, 963, 964
PspXI VCTCGAGB 1 cut(s) 292
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 3 cut(s) 5, 464, 584
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 3 cut(s) 154, 172, 375
SaqAI TTAA 1 cut(s) 977
SatI GCNGC 5 cut(s) 272, 453, 456, 561, 993
Sau3AI GATC 3 cut(s) 5, 464, 584
Sau96I GGNCC 3 cut(s) 546, 963, 964
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 401, 586
ScrFI CCNGG 2 cut(s) 545, 886
SduI GDGCHC 2 cut(s) 572, 967
SfaNI GCATC 2 cut(s) 154, 609
SfcI CTRYAG 1 cut(s) 357
Sfr274I CTCGAG 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 3 cut(s) 154, 172, 375
SmlI CTYRAG 2 cut(s) 250, 292
SmoI CTYRAG 2 cut(s) 250, 292
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 1 cut(s) 504
SsiI CCGC 4 cut(s) 85, 272, 297, 705
SspMI CTAG 5 cut(s) 90, 179, 627, 800, 807
StyD4I CCNGG 2 cut(s) 543, 884
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 1067
TaqI TCGA 3 cut(s) 293, 524, 590
TasI AATT 1 cut(s) 504
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 731, 763
Tru1I TTAA 1 cut(s) 977
Tru9I TTAA 1 cut(s) 977
TscAI CASTG 2 cut(s) 43, 366
TseI GCWGC 4 cut(s) 452, 455, 560, 992
TspDTI ATGAA 4 cut(s) 792, 968, 1062, 1101
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 43, 366
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 1 cut(s) 609
XhoI CTCGAG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 5 cut(s) 90, 179, 627, 800, 807
ZraI GACGTC 1 cut(s) 1065
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.