MD13G1113300.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008358
Physical Location & Seq
Forward (+)
8235771 .. 8239746
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1113300.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGAGATCCATAGAGGATAAGGAGATTTCTGGAGGGACTGGTATAAATTTTGAGTTTCAGAAAGCAAATGGAGGTAGCAGGACACCCCATCACAGAACAGCCTTGGGAAAACCAACACCTTCCAAATGGGATGATGCACAAAAATGGTTGGTGGGATTGTCCAGAGGAGCAGAAAAACACCAGTCCAAAACAAAACCCAGAAACTCAAATGCTGATGACTTGAGACTCATAGCTCCTGTACCACAGAAGGAGCAGGACTATTCAGATGGAGAAGAAGAACATCATCAACAAGAAGAAAATGGCTGTCCTAGGTCAGCTATGGCGAATCAGTACGATGTGGAGACGAAGAAAGTGGATTGTGATGATTCAGTGTGGAGAAGCAGCAACAAATCTATGGAGAACTCGACAGTGACTATGAGATCTATATGTTTGAGGGACATGGGGACAGAAATGACCCCTACTGCAAGCCAGGAACCTTCAAGAACTACCACCCCTATTCGAGCAACAACTCCGGCCGCGCGCAGCCCTATATCTTCGGGGTCATCTACCCCGGTGAGGCCGTGCCAGCATGGGAGGCAGGGCGCTCATCAAGGGTATCAAGTATCAACTGATGGGGGAAGAAGTGGTCATGATCAGACCAGTTCTTGTGGGAGAGGGAGCGGCACAGCGAAACGTTATGCAGAAGAATCAAATGCTTGCAAGAATTTGTCTGAGAATCCGAGTTCAGATCAAGGTACTAAACCGAGTCCCTTGGAAACAAGAGCAATGGCTTGGGATGAAGCAGAACGTGCCAAATATATAGCAAGGTATAAACGTGAAGAGGTGAGAATACAAGCCTGGGAAAACCATGAGAAGAGGAAAGCCGAGATGGAAATGCGAAAAATGGAGGTGAAAGCGGAGAGAATGAAAACTCGGGGCCAAGAGAAGTTAACGAATAAACTCGCAGCAACCAGAAGAATAGCTGAAGAAAAGAGGGCAAATGCAGAGGCCAAACTCAATGAAAATGCTTTGAGGACTTCAGAAAAGGCAGATTACATAAGGAGGACTGGTCATTTGCCCTCTAATTTCTCTTTCAAGTTGCCTTCTCTTTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

366

Amino Acids

40.9

Weight (kDa)

9.19

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 252 - 354 4.6e-33 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 660
AccII CGCG 2 cut(s) 518, 520
AciI CCGC 3 cut(s) 516, 660, 896
AclI AACGTT 1 cut(s) 673
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 2 cut(s) 46, 703
AcuI CTGAAG 2 cut(s) 984, 1002
AfaI GTAC 3 cut(s) 240, 332, 736
AfiI CCNNNNNNNGG 1 cut(s) 555
AgsI TTSAA 2 cut(s) 480, 1075
AjnI CCWGG 2 cut(s) 468, 836
AluBI AGCT 3 cut(s) 233, 317, 962
AluI AGCT 3 cut(s) 233, 317, 962
Alw26I GTCTC 2 cut(s) 217, 335
Ama87I CYCGRG 1 cut(s) 912
AoxI GGCC 4 cut(s) 513, 557, 916, 987
ApeKI GCWGC 3 cut(s) 381, 522, 944
ApoI RAATTY 2 cut(s) 46, 703
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 3 cut(s) 520, 522, 584
AspS9I GGNCC 1 cut(s) 916
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 3 cut(s) 565, 835, 901
AvaI CYCGRG 1 cut(s) 912
AvrII CCTAGG 1 cut(s) 308
BbvI GCAGC 3 cut(s) 393, 534, 956
BccI CCATC 4 cut(s) 96, 260, 605, 862
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 2 cut(s) 470, 838
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 217, 335
BfaI CTAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 585
BglII AGATCT 1 cut(s) 419
BisI GCNGC 5 cut(s) 382, 516, 523, 661, 945
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 5 cut(s) 383, 517, 524, 662, 946
Bme1390I CCNGG 3 cut(s) 470, 551, 838
BmeT110I CYCGRG 1 cut(s) 912
BmgT120I GGNCC 1 cut(s) 916
BmiI GGNNCC 2 cut(s) 474, 917
BmrFI CCNGG 3 cut(s) 470, 551, 838
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 551
BsaJI CCNNGG 5 cut(s) 102, 308, 549, 750, 837
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse1I ACTGG 4 cut(s) 43, 181, 639, 1051
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 470, 838
BseDI CCNNGG 5 cut(s) 102, 308, 549, 750, 837
BseGI GGATG 2 cut(s) 136, 781
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 4 cut(s) 43, 181, 639, 1051
BsePI GCGCGC 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 180
BseX3I CGGCCG 1 cut(s) 513
BseXI GCAGC 3 cut(s) 393, 534, 956
Bsh1236I CGCG 2 cut(s) 518, 520
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 4 cut(s) 515, 559, 918, 989
BsiEI CGRYCG 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 912
BsiSI CCGG 2 cut(s) 512, 551
BslFI GGGAC 4 cut(s) 49, 449, 457, 732
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 2 cut(s) 217, 335
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 4 cut(s) 49, 449, 457, 732
BsnI GGCC 4 cut(s) 515, 559, 918, 989
BsoBI CYCGRG 1 cut(s) 912
Bsp143I GATC 4 cut(s) 5, 419, 631, 727
BspACI CCGC 3 cut(s) 516, 660, 896
BspANI GGCC 4 cut(s) 515, 559, 918, 989
BspCNI CTCAG 1 cut(s) 703
BspFNI CGCG 2 cut(s) 518, 520
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 474, 917
BsrBI CCGCTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 4 cut(s) 43, 181, 639, 1051
BssECI CCNNGG 5 cut(s) 102, 308, 549, 750, 837
BssHII GCGCGC 1 cut(s) 518
BssMI GATC 4 cut(s) 5, 419, 631, 727
BssT1I CCWWGG 3 cut(s) 102, 308, 750
Bst2UI CCWGG 2 cut(s) 470, 838
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 813, 848
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 4 cut(s) 466, 520, 566, 697
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 136, 781
BstFNI CGCG 2 cut(s) 518, 520
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 3 cut(s) 520, 522, 584
BstKTI GATC 4 cut(s) 8, 422, 634, 730
BstMAI GTCTC 2 cut(s) 217, 335
BstMBI GATC 4 cut(s) 5, 419, 631, 727
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 3 cut(s) 565, 574, 788
BstNI CCWGG 2 cut(s) 470, 838
BstSCI CCNGG 3 cut(s) 468, 549, 836
BstUI CGCG 2 cut(s) 518, 520
BstV1I GCAGC 3 cut(s) 393, 534, 956
BstX2I RGATCY 2 cut(s) 5, 419
BstYI RGATCY 2 cut(s) 5, 419
BstZI CGGCCG 1 cut(s) 513
BsuRI GGCC 4 cut(s) 515, 559, 918, 989
BtsCI GGATG 2 cut(s) 136, 781
BtsIMutI CAGTG 2 cut(s) 375, 414
Cac8I GCNNGC 4 cut(s) 466, 520, 566, 697
CciI TCATGA 1 cut(s) 628
CfoI GCGC 3 cut(s) 520, 522, 584
Cfr13I GGNCC 1 cut(s) 916
Csp6I GTAC 3 cut(s) 239, 331, 735
CviAII CATG 4 cut(s) 439, 569, 629, 848
CviQI GTAC 3 cut(s) 239, 331, 735
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 7, 421, 633, 729
DpnII GATC 4 cut(s) 5, 419, 631, 727
EaeI YGGCCR 1 cut(s) 513
EagI CGGCCG 1 cut(s) 513
Eam1104I CTCTTC 2 cut(s) 813, 848
EarI CTCTTC 2 cut(s) 813, 848
EclXI CGGCCG 1 cut(s) 513
Eco130I CCWWGG 3 cut(s) 102, 308, 750
Eco52I CGGCCG 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 984, 1002
Eco88I CYCGRG 1 cut(s) 912
EcoRII CCWGG 2 cut(s) 468, 836
EcoT14I CCWWGG 3 cut(s) 102, 308, 750
ErhI CCWWGG 3 cut(s) 102, 308, 750
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 4 cut(s) 442, 572, 632, 851
FaqI GGGAC 4 cut(s) 49, 449, 457, 732
FatI CATG 4 cut(s) 438, 568, 628, 847
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 5 cut(s) 382, 516, 523, 661, 945
FokI GGATG 2 cut(s) 143, 788
Fsp4HI GCNGC 5 cut(s) 382, 516, 523, 661, 945
FspBI CTAG 1 cut(s) 309
GlaI GCGC 3 cut(s) 519, 521, 583
GluI GCNGC 5 cut(s) 382, 516, 523, 661, 945
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 4 cut(s) 515, 559, 918, 989
HapII CCGG 2 cut(s) 512, 551
HhaI GCGC 3 cut(s) 520, 522, 584
Hin1II CATG 4 cut(s) 442, 572, 632, 851
Hin6I GCGC 3 cut(s) 518, 520, 582
HinP1I GCGC 3 cut(s) 518, 520, 582
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HinfI GANTC 6 cut(s) 225, 325, 365, 686, 715, 745
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 2 cut(s) 512, 551
HphI GGTGA 3 cut(s) 565, 835, 901
Hpy166II GTNNAC 1 cut(s) 930
Hpy188I TCNGA 7 cut(s) 60, 265, 636, 712, 720, 727, 1021
Hpy188III TCNNGA 4 cut(s) 30, 162, 480, 629
Hpy8I GTNNAC 1 cut(s) 930
HpyAV CCTTC 4 cut(s) 129, 241, 486, 1092
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 3 cut(s) 673, 787, 814
HpyCH4V TGCA 5 cut(s) 137, 464, 680, 699, 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 565, 574, 788
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 3 cut(s) 673, 787, 814
Hsp92II CATG 4 cut(s) 442, 572, 632, 851
HspAI GCGC 3 cut(s) 518, 520, 582
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 4 cut(s) 5, 419, 631, 727
LmnI GCTCC 4 cut(s) 167, 238, 250, 657
Lsp1109I GCAGC 3 cut(s) 393, 534, 956
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 309
MaeII ACGT 3 cut(s) 673, 787, 814
MaeIII GTNAC 1 cut(s) 409
MalI GATC 4 cut(s) 7, 421, 633, 729
MbiI CCGCTC 1 cut(s) 660
MboI GATC 4 cut(s) 5, 419, 631, 727
MflI RGATCY 2 cut(s) 5, 419
MluCI AATT 3 cut(s) 46, 703, 1063
MlyI GAGTC 2 cut(s) 219, 754
MseI TTAA 1 cut(s) 929
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 2 cut(s) 512, 551
MspR9I CCNGG 3 cut(s) 470, 551, 838
MvaI CCWGG 2 cut(s) 470, 838
MvnI CGCG 2 cut(s) 518, 520
MwoI GCNNNNNNNGC 3 cut(s) 565, 574, 788
NciI CCSGG 1 cut(s) 551
NdeII GATC 4 cut(s) 5, 419, 631, 727
NlaIII CATG 4 cut(s) 442, 572, 632, 851
NlaIV GGNNCC 2 cut(s) 474, 917
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 1 cut(s) 409
PagI TCATGA 1 cut(s) 628
PauI GCGCGC 1 cut(s) 518
PfeI GAWTC 4 cut(s) 325, 365, 686, 715
PkrI GCNGC 5 cut(s) 383, 517, 524, 662, 946
PleI GAGTC 2 cut(s) 219, 753
PpsI GAGTC 2 cut(s) 219, 753
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 468, 836
PspGI CCWGG 2 cut(s) 468, 836
PspN4I GGNNCC 2 cut(s) 474, 917
PspPI GGNCC 1 cut(s) 916
PsuI RGATCY 2 cut(s) 5, 419
PteI GCGCGC 1 cut(s) 518
RsaI GTAC 3 cut(s) 240, 332, 736
RsaNI GTAC 3 cut(s) 239, 331, 735
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 929
SatI GCNGC 5 cut(s) 382, 516, 523, 661, 945
Sau3AI GATC 4 cut(s) 5, 419, 631, 727
Sau96I GGNCC 1 cut(s) 916
SchI GAGTC 2 cut(s) 219, 754
ScrFI CCNGG 3 cut(s) 470, 551, 838
SfaNI GCATC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 3 cut(s) 46, 703, 1063
SsiI CCGC 3 cut(s) 516, 660, 896
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 468, 549, 836
StyI CCWWGG 3 cut(s) 102, 308, 750
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 3 cut(s) 676, 790, 817
TaqI TCGA 2 cut(s) 404, 499
TasI AATT 3 cut(s) 46, 703, 1063
TauI GCSGC 2 cut(s) 518, 663
TfiI GAWTC 4 cut(s) 325, 365, 686, 715
Tru1I TTAA 1 cut(s) 929
Tru9I TTAA 1 cut(s) 929
TscAI CASTG 2 cut(s) 375, 414
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 3 cut(s) 381, 522, 944
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 792, 920, 1014
TspRI CASTG 2 cut(s) 375, 414
XapI RAATTY 2 cut(s) 46, 703
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.