AT1G67970

heat shock factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012430
Physical Location & Seq
Reverse (-)
25484449 .. 25486512
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67970.1

Sequence Viewer

Length: 1125 bp
ATGGTGAAATCGACGGACGGTGGTGGTGGGTCTTCTTCTTCTTCTTCAGTGGCGCCGTTCTTGAGAAAATGTTACGATATGGTTGATGATTCTACTACTGACTCTATAATCTCATGGAGTCCAAGTGCAGATAATAGCTTCGTTATCTTGGACACCACCGTCTTCTCTGTTCAACTCTTGCCTAAATACTTTAAACACAGCAATTTCTCTAGCTTCATTCGTCAGCTCAATATCTACGGTTTTAGAAAAGTTGATGCAGATCGATGGGAGTTTGCGAATGACGGGTTTGTGAGAGGTCAAAAGGATTTGCTGAAGAATGTTATCAGGAGGAAGAATGTTCAAAGTAGTGAGCAGAGCAAACATGAGAGTACAAGTACAACATATGCTCAGGAAAAGAGTGGATTGTGGAAGGAAGTTGATATTTTGAAAGGTGATAAGCAGGTATTGGCGCAGGAGTTGATCAAAGTTAGGCAGTATCAGGAGGTGACGGATACTAAGATGTTACATTTAGAAGACAGAGTTCAAGGAATGGAAGAGAGTCAGCAGGAGATGCTTTCGTTTTTGGTTATGGTTATGAAGAATCCAAGTCTTTTAGTTCAGTTACTTCAGCCAAAGGAGAAAAACACTTGGCGAAAAGCGGGGGAAGGAGCGAAGATTGTGGAAGAAGTGACTGATGAAGGAGAATCAAACTCATATGGTCTTCCTTTAGTAACATACCAGCCACCATCGGACAACAATGGAACTGCAAAGTCAAACTCGAACGACGTAAATGATTTCTTGAGAAACGCCGATATGTTGAAGTTCTGCTTAGATGAAAACCATGTGCCATTGATCATACCTGATCTATACGATGATGGAGCATGGGAAAAGCTTTTGTTGTTGAGCCCTTCAAGGAAGAAGACGAAGAAGCAGGAGAACATTGTGAAGAAAGGAAAGGATGATTTGACATTGGAGGAGGAGGAGGAGGATGGAACAATGGAATTAGACAAGAGCTATATGCTTAAGCTGATATCAGAAGAGATGGAGAAACCAGATGACTTTGAATTTGGACAGCTTACTCCTGAGAGGTCTAGGAACCTTGAGATTTTGACAGAGCAGATGGAATTGCTGGCTTCAAATGAATAG

Protein Analysis

374

Amino Acids

42.63

Weight (kDa)

4.86

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 20 - 110 7.1e-28 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012430)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67970
fragaria_vesca FvH4_4g33360 FvH4_4g33360
malus_domestica MD13G1018800.v1.1 MD16G1016700.v1.1
prunus_persica Prupe.1G335100_v2.0.a1
pyrus_communis pycom13g01590
rosa_chinensis RchiOBHm_Chr4g0442621
rosa_laevigata RLG00000005998
rosa_multiflora Rmu_co8503207.1_g000002 Rmu_sc0025219.1_g000001 Rmu_ssc0000204.1_g000036
rosa_roxburghii Rroxscaffold_5G00383420
rosa_rugosa Rorug04G0341400
rosa_samantha Rh4AG394100 Rh4BG407100 Rh4CG422500 Rh4DG401100
rosa_wichuraiana Rw4G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 1 cut(s) 638
AcsI RAATTY 1 cut(s) 1043
AcuI CTGAAG 3 cut(s) 30, 332, 590
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 2 cut(s) 370, 376
AflII CTTAAG 1 cut(s) 1001
AgsI TTSAA 8 cut(s) 173, 341, 427, 524, 799, 891, 1043, 1116
AluBI AGCT 7 cut(s) 138, 213, 226, 871, 993, 1006, 1054
AluI AGCT 7 cut(s) 138, 213, 226, 871, 993, 1006, 1054
ApoI RAATTY 1 cut(s) 1043
ArsI GACNNNNNNTTYG 2 cut(s) 1028, 1060
AspLEI GCGC 2 cut(s) 55, 451
AsuHPI GGTGA 3 cut(s) 16, 443, 496
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 887
BbsI GAAGAC 5 cut(s) 24, 154, 519, 692, 905
BccI CCATC 6 cut(s) 258, 733, 848, 962, 1015, 1093
BceAI ACGGC 1 cut(s) 40
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 2 cut(s) 459, 831
BfaI CTAG 2 cut(s) 210, 1071
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1001
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 54, 1076
BmsI GCATC 2 cut(s) 244, 540
BpiI GAAGAC 5 cut(s) 24, 154, 519, 692, 905
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 3 cut(s) 82, 799, 1100
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 262
BseGI GGATG 2 cut(s) 943, 973
BseJI GATNNNNATC 1 cut(s) 258
BseMII CTCAG 2 cut(s) 401, 1053
BseRI GAGGAG 4 cut(s) 968, 971, 974, 977
BsgI GTGCAG 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 887
Bsp143I GATC 4 cut(s) 259, 459, 831, 841
BspACI CCGC 1 cut(s) 638
BspCNI CTCAG 2 cut(s) 400, 1054
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 54, 1076
BspMI ACCTGC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 1001
BssMI GATC 4 cut(s) 259, 459, 831, 841
BssNI GRCGYC 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 20, 160, 239
Bst6I CTCTTC 2 cut(s) 528, 1011
BstACI GRCGYC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 1001
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 4 cut(s) 387, 495, 808, 1062
BstF5I GGATG 2 cut(s) 943, 973
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 451
BstKTI GATC 4 cut(s) 262, 462, 834, 844
BstMBI GATC 4 cut(s) 259, 459, 831, 841
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstV2I GAAGAC 5 cut(s) 24, 154, 519, 692, 905
Bsu15I ATCGAT 1 cut(s) 262
BsuI GTATCC 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 2 cut(s) 943, 973
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 1110
CfoI GCGC 2 cut(s) 55, 451
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 2 cut(s) 369, 375
CviAII CATG 4 cut(s) 114, 362, 821, 861
CviQI GTAC 2 cut(s) 369, 375
DdeI CTNAG 4 cut(s) 387, 495, 808, 1062
DinI GGCGCC 1 cut(s) 54
DpnI GATC 4 cut(s) 261, 461, 833, 843
DpnII GATC 4 cut(s) 259, 459, 831, 841
DraI TTTAAA 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 528, 1011
EarI CTCTTC 2 cut(s) 528, 1011
Eco24I GRGCYC 1 cut(s) 887
Eco32I GATATC 1 cut(s) 1011
Eco57I CTGAAG 3 cut(s) 30, 332, 590
EcoRV GATATC 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 887
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 4 cut(s) 117, 365, 824, 864
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FatI CATG 4 cut(s) 113, 361, 820, 860
FauI CCCGC 1 cut(s) 631
FauNDI CATATG 2 cut(s) 382, 694
FbaI TGATCA 2 cut(s) 459, 831
FokI GGATG 2 cut(s) 950, 980
FriOI GRGCYC 1 cut(s) 887
FspBI CTAG 2 cut(s) 210, 1071
GlaI GCGC 2 cut(s) 54, 450
HaeII RGCGCY 1 cut(s) 56
HhaI GCGC 2 cut(s) 55, 451
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 4 cut(s) 117, 365, 824, 864
Hin6I GCGC 2 cut(s) 53, 449
HinP1I GCGC 2 cut(s) 53, 449
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 6 cut(s) 89, 101, 118, 538, 580, 683
HphI GGTGA 3 cut(s) 16, 443, 496
Hpy188I TCNGA 2 cut(s) 730, 1015
Hpy188III TCNNGA 6 cut(s) 61, 325, 389, 479, 778, 1061
Hpy99I CGWCG 2 cut(s) 16, 767
HpyAV CCTTC 4 cut(s) 403, 638, 671, 897
HpyCH4III ACNGT 3 cut(s) 20, 160, 239
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 3 cut(s) 128, 257, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 4 cut(s) 387, 495, 808, 1062
HpySE526I ACGT 1 cut(s) 765
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 4 cut(s) 117, 365, 824, 864
HspAI GCGC 2 cut(s) 53, 449
KasI GGCGCC 1 cut(s) 52
Ksp22I TGATCA 2 cut(s) 459, 831
Kzo9I GATC 4 cut(s) 259, 459, 831, 841
LmnI GCTCC 2 cut(s) 647, 857
LweI GCATC 2 cut(s) 244, 540
MaeI CTAG 2 cut(s) 210, 1071
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 6 cut(s) 71, 484, 501, 600, 667, 709
MalI GATC 4 cut(s) 261, 461, 833, 843
MboI GATC 4 cut(s) 259, 459, 831, 841
MhlI GDGCHC 1 cut(s) 887
MluCI AATT 4 cut(s) 202, 980, 1043, 1103
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 3 cut(s) 95, 127, 547
MnlI CCTC 9 cut(s) 287, 321, 475, 946, 949, 952, 955, 958, 1059
MseI TTAA 2 cut(s) 192, 1002
MspCI CTTAAG 1 cut(s) 1001
MwoI GCNNNNNNNGC 1 cut(s) 550
NarI GGCGCC 1 cut(s) 53
NdeI CATATG 2 cut(s) 382, 694
NdeII GATC 4 cut(s) 259, 459, 831, 841
NlaIII CATG 4 cut(s) 117, 365, 824, 864
NlaIV GGNNCC 2 cut(s) 54, 1076
NmuCI GTSAC 2 cut(s) 484, 667
PfeI GAWTC 3 cut(s) 89, 580, 683
PleI GAGTC 3 cut(s) 95, 126, 546
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 3 cut(s) 95, 126, 546
PspN4I GGNNCC 2 cut(s) 54, 1076
RsaI GTAC 2 cut(s) 370, 376
RsaNI GTAC 2 cut(s) 369, 375
SaqAI TTAA 2 cut(s) 192, 1002
Sau3AI GATC 4 cut(s) 259, 459, 831, 841
SchI GAGTC 3 cut(s) 95, 127, 547
SduI GDGCHC 1 cut(s) 887
SfaNI GCATC 2 cut(s) 244, 540
SfoI GGCGCC 1 cut(s) 54
SmlI CTYRAG 4 cut(s) 61, 778, 1001, 1079
SmoI CTYRAG 4 cut(s) 61, 778, 1001, 1079
Sse9I AATT 4 cut(s) 202, 980, 1043, 1103
SsiI CCGC 1 cut(s) 638
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 2 cut(s) 210, 1071
TaaI ACNGT 3 cut(s) 20, 160, 239
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 11, 262, 758
TasI AATT 4 cut(s) 202, 980, 1043, 1103
TatI WGTACW 2 cut(s) 368, 374
TfiI GAWTC 3 cut(s) 89, 580, 683
Tru1I TTAA 2 cut(s) 192, 1002
Tru9I TTAA 2 cut(s) 192, 1002
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 484, 667
Tsp45I GTSAC 2 cut(s) 484, 667
TspDTI ATGAA 4 cut(s) 205, 590, 690, 828
TspGWI ACGGA 2 cut(s) 29, 503
TspRI CASTG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 1001
XapI RAATTY 1 cut(s) 1043
XspI CTAG 2 cut(s) 210, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.