Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012430

Physical Location & Seq

Genomic Coordinates Reverse (-)

63025338 .. 63026496

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAATTCTGATGGTGCAATAGTAAGGTACCGATCGCCTTTGGATGCAGCACCAAAGCCTATACTCACACAGAGTTCAGGCTCAGGAAAACAACCAGAGTTTGATTCTTACCCTGATGGGATGAAAGATTTTTTTGTGAATTCTGATTTAGTGAAAATGCTAATGGATGATAAGTTGAGCCCTCGAGAAAATCATGCCCCATTTATCCTGCCAGATGCTGATGTTGATGATAATGCATGGGAGAAGCTTCTTTTAACTAGTTATTTGTTAGAAAATACTGAAGGTGCAAAGGAAGAAAGAAAAGAGCCCGAGGATTCTAGAATGGAGGTCGAATCAACAGCAGCTGAGTTGGACGAATCCAAAAATTTTGATTCTTTAATAGAACAAATGAACAAATCAGTTCATAGATCTAATATGGAGAACTCTCAGAATTTGGAATTCATTGGTGAACATCTGGGTCTCACGGCTTCCGAGCCCAACAAGAAACAAGAAGCACAGTTGGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

169

Amino Acids

18.99

Weight (kDa)

4.55

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67970
fragaria_vesca	FvH4_4g33360 FvH4_4g33360
malus_domestica	MD13G1018800.v1.1 MD16G1016700.v1.1
prunus_persica	Prupe.1G335100_v2.0.a1
pyrus_communis	pycom13g01590
rosa_chinensis	RchiOBHm_Chr4g0442621
rosa_laevigata	RLG00000005998
rosa_multiflora	Rmu_co8503207.1_g000002 Rmu_sc0025219.1_g000001 Rmu_ssc0000204.1_g000036
rosa_roxburghii	Rroxscaffold_5G00383420
rosa_rugosa	Rorug04G0341400
rosa_samantha	Rh4AG394100 Rh4BG407100 Rh4CG422500 Rh4DG401100
rosa_wichuraiana	Rw4G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	27
AcsI	RAATTY	5 cut(s)	4, 139, 364, 430, 437
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	29
AhlI	ACTAGT	1 cut(s)	257
AluBI	AGCT	2 cut(s)	247, 344
AluI	AGCT	2 cut(s)	247, 344
Alw26I	GTCTC	1 cut(s)	464
AlwNI	CAGNNNCTG	2 cut(s)	218, 344
Ama87I	CYCGRG	2 cut(s)	183, 308
ApeKI	GCWGC	2 cut(s)	47, 341
ApoI	RAATTY	5 cut(s)	4, 139, 364, 430, 437
Asp718I	GGTACC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	183, 308
BanI	GGYRCC	1 cut(s)	27
BanII	GRGCYC	3 cut(s)	182, 309, 477
BbvI	GCAGC	2 cut(s)	59, 353
BccI	CCATC	2 cut(s)	5, 110
BceAI	ACGGC	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	2 cut(s)	258, 318
BglII	AGATCT	1 cut(s)	407
BisI	GCNGC	2 cut(s)	48, 342
BlsI	GCNGC	2 cut(s)	49, 343
BmeT110I	CYCGRG	2 cut(s)	183, 308
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	2 cut(s)	34, 205
Bpu10I	CCTNAGC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	49, 126, 172
BseMII	CTCAG	3 cut(s)	96, 336, 440
BseXI	GCAGC	2 cut(s)	59, 353
Bsh1285I	CGRYCG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	35
BsiHKCI	CYCGRG	2 cut(s)	183, 308
BsmAI	GTCTC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	2 cut(s)	183, 308
Bsp1286I	GDGCHC	3 cut(s)	182, 309, 477
Bsp143I	GATC	2 cut(s)	32, 407
BspCNI	CTCAG	3 cut(s)	95, 337, 439
BspLI	GGNNCC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	32, 407
Bst4CI	ACNGT	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	82, 345, 426
BstF5I	GGATG	3 cut(s)	49, 126, 172
BstKTI	GATC	2 cut(s)	35, 410
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	32, 407
BstMCI	CGRYCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	59, 353
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	49, 126, 172
CaiI	CAGNNNCTG	2 cut(s)	218, 344
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	194, 237
CviJI	RGCY	8 cut(s)	58, 81, 180, 247, 307, 344, 467, 475
CviKI_1	RGCY	8 cut(s)	58, 81, 180, 247, 307, 344, 467, 475
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	82, 345, 426
DpnI	GATC	2 cut(s)	34, 409
DpnII	GATC	2 cut(s)	32, 407
Eco24I	GRGCYC	3 cut(s)	182, 309, 477
Eco31I	GGTCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	183, 308
EcoRI	GAATTC	3 cut(s)	4, 139, 437
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	3 cut(s)	182, 309, 477
FaeI	CATG	2 cut(s)	197, 240
FaiI	YATR	5 cut(s)	62, 195, 238, 405, 416
FatI	CATG	2 cut(s)	193, 236
Fnu4HI	GCNGC	2 cut(s)	48, 342
FokI	GGATG	3 cut(s)	56, 133, 179
FriOI	GRGCYC	3 cut(s)	182, 309, 477
Fsp4HI	GCNGC	2 cut(s)	48, 342
FspBI	CTAG	2 cut(s)	258, 318
GluI	GCNGC	2 cut(s)	48, 342
Hin1II	CATG	2 cut(s)	197, 240
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	5 cut(s)	104, 314, 332, 356, 371
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	10, 145, 429, 472
Hpy188III	TCNNGA	3 cut(s)	84, 185, 318
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	17, 47, 236, 287
HpyF3I	CTNAG	3 cut(s)	82, 345, 426
Hsp92II	CATG	2 cut(s)	197, 240
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	32, 407
LpnPI	CCDG	7 cut(s)	63, 69, 108, 126, 221, 225, 440
Lsp1109I	GCAGC	2 cut(s)	59, 353
LweI	GCATC	2 cut(s)	34, 205
MaeI	CTAG	2 cut(s)	258, 318
MalI	GATC	2 cut(s)	34, 409
MboI	GATC	2 cut(s)	32, 407
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	3 cut(s)	182, 309, 477
MluCI	AATT	5 cut(s)	4, 139, 364, 430, 437
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	3 cut(s)	192, 304, 319
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	2 cut(s)	254, 377
MspA1I	CMGCKG	1 cut(s)	344
NdeII	GATC	2 cut(s)	32, 407
NlaIII	CATG	2 cut(s)	197, 240
NlaIV	GGNNCC	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	183
PfeI	GAWTC	5 cut(s)	104, 314, 332, 356, 371
PkrI	GCNGC	2 cut(s)	49, 343
Ple19I	CGATCG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	29
PstNI	CAGNNNCTG	2 cut(s)	218, 344
PsuI	RGATCY	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	254, 377
SatI	GCNGC	2 cut(s)	48, 342
Sau3AI	GATC	2 cut(s)	32, 407
SduI	GDGCHC	3 cut(s)	182, 309, 477
SetI	ASST	5 cut(s)	29, 249, 286, 330, 346
SfaNI	GCATC	2 cut(s)	34, 205
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	5 cut(s)	4, 139, 364, 430, 437
SspMI	CTAG	2 cut(s)	258, 318
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	184, 330
TasI	AATT	5 cut(s)	4, 139, 364, 430, 437
TfiI	GAWTC	5 cut(s)	104, 314, 332, 356, 371
Tru1I	TTAA	2 cut(s)	254, 377
Tru9I	TTAA	2 cut(s)	254, 377
TseI	GCWGC	2 cut(s)	47, 341
TspDTI	ATGAA	5 cut(s)	17, 137, 392, 404, 430
XapI	RAATTY	5 cut(s)	4, 139, 364, 430, 437
XbaI	TCTAGA	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	183
XspI	CTAG	2 cut(s)	258, 318
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.