Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0012430

Physical Location & Seq

Genomic Coordinates Forward (+)

175999 .. 178226

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atggtgagaaaatcgaaggagaaggagaagaccggagatgggtccggctccgccgagggatcggtggctccctttctcagaaaatgttacgagatggtcgacgacgaacaaacggactctataatctcgtggagtgagagcaatgacagctttgtgattagggacgtgacccagttctcggttttgatgctccccaagaatttcaagcacagcaacttttccagcttcatgaggcagctcaatatctacggctttagaaaaatagatccggatcattatgtatttgcaaatgaaggatttattcgaggtcaaaagcatttgttgaagaatattttcagaaggaaatatccgcagggcactgatcagagtaaaacattgcagcagaaagacaatcagagagacgatcctgatgaaccttctgaagacattgaaagtggtctgtggagggaagttgagaacctgaagatcgataagatctctctaaagcaagagttggtgaagcttaggcagcaccaggaaatatcagaaaataacttgctcctcctgagagatcgccttcatggaatggagaaggatcagcaacagatgctctcatttctggtgatggcaatgcaaaatcctgggtttttagttcagctggttcagtcaaaagaacatagctggcgcttcgctgaagctggaaatatgctagaagaagtagatgatggtagaccaatggctgctgatggtgccatagtaaggtaccaacctcctttggatgaagcaccagagcctgtcttcacaccacattcgggttcagagattcaaccagaaatagattcttttgtgaattctgatggtgtaatagtgaggtaccaacctgtagatgaagcaccagatcctgtattcacacggaattttgtctcggagaaacaaccagaatttgattcctatcccgatggagtgggagattctttcatgtattctgatggtgcaatagtaaggtaccgatcgcctatggatgcagcaccaaagcctatactcacacagagttcaggctcaggaaaacaaccagagtttgattcttaccctgatgggatgaaagatttttttgtgaattctgatttagtgaaaatgctaatggatgataagttgagccctcgagaaaatcatgcgccatttatcctgccagatactgatgttgatgataatgcatgggagaagcttcttttaactagttatttgttagaaaatactgaaggtgcaaaggaagaaagaaaagagcccgaggattctagaatggaggtcgaatcaacagcagctgagttggacgaatccaaaaattttgattctttaatagaacaaatgaacaaatcagttcatggatctaatatggagaactctcggaatttggaattcaatggtgaacatctgggtctcatggcttccgagcccaacaagaaacaagaaacacagttgggaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

488

Amino Acids

55.73

Weight (kDa)

4.75

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67970
fragaria_vesca	FvH4_4g33360 FvH4_4g33360
malus_domestica	MD13G1018800.v1.1 MD16G1016700.v1.1
prunus_persica	Prupe.1G335100_v2.0.a1
pyrus_communis	pycom13g01590
rosa_chinensis	RchiOBHm_Chr4g0442621
rosa_laevigata	RLG00000005998
rosa_multiflora	Rmu_co8503207.1_g000002 Rmu_sc0025219.1_g000001 Rmu_ssc0000204.1_g000036
rosa_roxburghii	Rroxscaffold_5G00383420
rosa_rugosa	Rorug04G0341400
rosa_samantha	Rh4AG394100 Rh4BG407100 Rh4CG422500 Rh4DG401100
rosa_wichuraiana	Rw4G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	741, 852, 984
AccB1I	GGYRCC	4 cut(s)	728, 741, 852, 984
AccI	GTMKAC	2 cut(s)	99, 709
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	51, 350
AclWI	GGATC	7 cut(s)	67, 260, 279, 398, 582, 872, 1372
AcsI	RAATTY	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
AcuI	CTGAAG	4 cut(s)	441, 482, 693, 1257
AfaI	GTAC	3 cut(s)	743, 854, 986
AfiI	CCNNNNNNNGG	4 cut(s)	39, 178, 738, 791
AgsI	TTSAA	5 cut(s)	205, 325, 431, 806, 1399
AhlI	ACTAGT	1 cut(s)	1214
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	513, 619
AluBI	AGCT	9 cut(s)	150, 225, 238, 502, 637, 660, 677, 1204, 1301
AluI	AGCT	9 cut(s)	150, 225, 238, 502, 637, 660, 677, 1204, 1301
Alw26I	GTCTC	3 cut(s)	393, 907, 1421
AlwI	GGATC	7 cut(s)	67, 260, 279, 398, 582, 872, 1372
AlwNI	CAGNNNCTG	4 cut(s)	773, 881, 1175, 1301
Ama87I	CYCGRG	2 cut(s)	1140, 1265
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	6 cut(s)	235, 379, 508, 719, 1004, 1298
ApoI	RAATTY	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
Asp700I	GAANNNNTTC	1 cut(s)	332
Asp718I	GGTACC	3 cut(s)	741, 852, 984
AspLEI	GCGC	2 cut(s)	666, 1156
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	4 cut(s)	16, 508, 613, 1415
AvaI	CYCGRG	2 cut(s)	1140, 1265
AvaII	GGWCC	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BanI	GGYRCC	4 cut(s)	728, 741, 852, 984
BanII	GRGCYC	3 cut(s)	1139, 1266, 1434
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	3 cut(s)	35, 429, 769
BbvI	GCAGC	6 cut(s)	247, 391, 520, 706, 1016, 1310
BccI	CCATC	9 cut(s)	32, 88, 598, 698, 719, 830, 932, 962, 1067
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	515, 621
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	393, 907, 1421
BcuI	ACTAGT	1 cut(s)	1214
BfaI	CTAG	3 cut(s)	689, 1215, 1275
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	667
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	6 cut(s)	236, 380, 509, 720, 1005, 1299
BlsI	GCNGC	6 cut(s)	237, 381, 510, 721, 1006, 1300
Bme1390I	CCNGG	2 cut(s)	515, 621
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	2 cut(s)	1140, 1265
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	7 cut(s)	43, 49, 69, 730, 743, 854, 986
BmrFI	CCNGG	2 cut(s)	515, 621
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	177, 576, 991
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	3 cut(s)	35, 429, 769
Bpu10I	CCTNAGC	2 cut(s)	503, 1039
Bsa29I	ATCGAT	1 cut(s)	468
BsaBI	GATNNNNATC	2 cut(s)	270, 930
BsaI	GGTCTC	1 cut(s)	1421
BsaJI	CCNNGG	3 cut(s)	54, 620, 1266
BsaWI	WCCGGW	2 cut(s)	32, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 178, 738, 791
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	3 cut(s)	148, 374, 615
Bse8I	GATNNNNATC	2 cut(s)	270, 930
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	515, 621
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	54, 620, 1266
BseGI	GGATG	4 cut(s)	763, 1006, 1083, 1129
BseJI	GATNNNNATC	2 cut(s)	270, 930
BseLI	CCNNNNNNNGG	4 cut(s)	39, 178, 738, 791
BseMI	GCAATG	3 cut(s)	148, 374, 615
BseMII	CTCAG	4 cut(s)	91, 536, 1053, 1293
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	6 cut(s)	247, 391, 520, 706, 1016, 1310
Bsh1285I	CGRYCG	1 cut(s)	992
BshNI	GGYRCC	4 cut(s)	728, 741, 852, 984
BshVI	ATCGAT	1 cut(s)	468
BsiEI	CGRYCG	1 cut(s)	992
BsiHKCI	CYCGRG	2 cut(s)	1140, 1265
BsiSI	CCGG	3 cut(s)	33, 45, 269
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	4 cut(s)	39, 178, 738, 791
BsmAI	GTCTC	3 cut(s)	393, 907, 1421
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	1421
BsoBI	CYCGRG	2 cut(s)	1140, 1265
Bsp1286I	GDGCHC	4 cut(s)	359, 1139, 1266, 1434
Bsp13I	TCCGGA	1 cut(s)	268
BspACI	CCGC	2 cut(s)	51, 350
BspCNI	CTCAG	4 cut(s)	90, 537, 1052, 1294
BspDI	ATCGAT	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	7 cut(s)	43, 49, 69, 730, 743, 854, 986
BspPI	GGATC	7 cut(s)	67, 260, 279, 398, 582, 872, 1372
BspT107I	GGYRCC	4 cut(s)	728, 741, 852, 984
BspTNI	GGTCTC	1 cut(s)	1421
BsrDI	GCAATG	3 cut(s)	148, 374, 615
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	54, 620, 1266
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	515, 621
Bst4CI	ACNGT	1 cut(s)	1455
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	5 cut(s)	77, 503, 545, 1039, 1302
BstF5I	GGATG	4 cut(s)	763, 1006, 1083, 1129
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	666, 1156
BstMAI	GTCTC	3 cut(s)	393, 907, 1421
BstMCI	CGRYCG	1 cut(s)	992
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 508, 586, 728
BstNI	CCWGG	2 cut(s)	515, 621
BstSCI	CCNGG	2 cut(s)	513, 619
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	6 cut(s)	247, 391, 520, 706, 1016, 1310
BstV2I	GAAGAC	3 cut(s)	35, 429, 769
BstX2I	RGATCY	4 cut(s)	265, 474, 877, 1364
BstYI	RGATCY	4 cut(s)	265, 474, 877, 1364
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	763, 1006, 1083, 1129
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	662
CaiI	CAGNNNCTG	4 cut(s)	773, 881, 1175, 1301
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	666, 1156
Cfr13I	GGNCC	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	742, 853, 985
CviAII	CATG	7 cut(s)	229, 560, 958, 1151, 1194, 1361, 1420
CviQI	GTAC	3 cut(s)	742, 853, 985
DdeI	CTNAG	5 cut(s)	77, 503, 545, 1039, 1302
EciI	GGCGGA	1 cut(s)	40
Eco24I	GRGCYC	3 cut(s)	1139, 1266, 1434
Eco31I	GGTCTC	1 cut(s)	1421
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	4 cut(s)	441, 482, 693, 1257
Eco88I	CYCGRG	2 cut(s)	1140, 1265
EcoRI	GAATTC	3 cut(s)	829, 1096, 1394
EcoRII	CCWGG	2 cut(s)	513, 619
EcoT22I	ATGCAT	1 cut(s)	1195
EcoT38I	GRGCYC	3 cut(s)	1139, 1266, 1434
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	7 cut(s)	232, 563, 961, 1154, 1197, 1364, 1423
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	7 cut(s)	228, 559, 957, 1150, 1193, 1360, 1419
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	2 cut(s)	99, 709
Fnu4HI	GCNGC	6 cut(s)	236, 380, 509, 720, 1005, 1299
FokI	GGATG	4 cut(s)	770, 1013, 1090, 1136
FriOI	GRGCYC	3 cut(s)	1139, 1266, 1434
Fsp4HI	GCNGC	6 cut(s)	236, 380, 509, 720, 1005, 1299
FspBI	CTAG	3 cut(s)	689, 1215, 1275
GlaI	GCGC	2 cut(s)	665, 1155
GluI	GCNGC	6 cut(s)	236, 380, 509, 720, 1005, 1299
HaeII	RGCGCY	1 cut(s)	667
HapII	CCGG	3 cut(s)	33, 45, 269
HhaI	GCGC	2 cut(s)	666, 1156
Hin1II	CATG	7 cut(s)	232, 563, 961, 1154, 1197, 1364, 1423
Hin6I	GCGC	2 cut(s)	664, 1154
HinP1I	GCGC	2 cut(s)	664, 1154
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	500, 1202
HpaII	CCGG	3 cut(s)	33, 45, 269
HphI	GGTGA	4 cut(s)	16, 508, 613, 1415
Hpy166II	GTNNAC	3 cut(s)	100, 710, 1406
Hpy188III	TCNNGA	8 cut(s)	229, 269, 407, 544, 935, 1041, 1142, 1275
Hpy8I	GTNNAC	3 cut(s)	100, 710, 1406
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	8 cut(s)	10, 16, 287, 333, 426, 565, 566, 1232
HpyCH4III	ACNGT	1 cut(s)	1455
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	7 cut(s)	287, 379, 613, 974, 1004, 1193, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 508, 586, 728
HpyF3I	CTNAG	5 cut(s)	77, 503, 545, 1039, 1302
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	232, 563, 961, 1154, 1197, 1364, 1423
HspAI	GCGC	2 cut(s)	664, 1154
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	3 cut(s)	745, 856, 988
Ksp22I	TGATCA	1 cut(s)	361
LmnI	GCTCC	4 cut(s)	53, 73, 195, 543
Lsp1109I	GCAGC	6 cut(s)	247, 391, 520, 706, 1016, 1310
LweI	GCATC	3 cut(s)	177, 576, 991
MaeI	CTAG	3 cut(s)	689, 1215, 1275
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	86, 166
MboII	GAAGA	7 cut(s)	40, 337, 434, 475, 704, 769, 1262
MflI	RGATCY	4 cut(s)	265, 474, 877, 1364
MhlI	GDGCHC	4 cut(s)	359, 1139, 1266, 1434
MluCI	AATT	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	1287
Mph1103I	ATGCAT	1 cut(s)	1195
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	1211, 1334
MspA1I	CMGCKG	2 cut(s)	637, 1301
MspI	CCGG	3 cut(s)	33, 45, 269
MspR9I	CCNGG	2 cut(s)	515, 621
MvaI	CCWGG	2 cut(s)	515, 621
MwoI	GCNNNNNNNGC	4 cut(s)	147, 508, 586, 728
NlaIII	CATG	7 cut(s)	232, 563, 961, 1154, 1197, 1364, 1423
NlaIV	GGNNCC	7 cut(s)	43, 49, 69, 730, 743, 854, 986
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	1195
PaeR7I	CTCGAG	1 cut(s)	1140
PagI	TCATGA	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	9 cut(s)	802, 818, 926, 950, 1061, 1271, 1289, 1313, 1328
PkrI	GCNGC	6 cut(s)	237, 381, 510, 721, 1006, 1300
Ple19I	CGATCG	1 cut(s)	992
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	513, 619
PspGI	CCWGG	2 cut(s)	513, 619
PspN4I	GGNNCC	7 cut(s)	43, 49, 69, 730, 743, 854, 986
PspPI	GGNCC	1 cut(s)	42
PstNI	CAGNNNCTG	4 cut(s)	773, 881, 1175, 1301
PsuI	RGATCY	4 cut(s)	265, 474, 877, 1364
PvuI	CGATCG	1 cut(s)	992
PvuII	CAGCTG	2 cut(s)	637, 1301
RsaI	GTAC	3 cut(s)	743, 854, 986
RsaNI	GTAC	3 cut(s)	742, 853, 985
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	1211, 1334
SatI	GCNGC	6 cut(s)	236, 380, 509, 720, 1005, 1299
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	515, 621
SduI	GDGCHC	4 cut(s)	359, 1139, 1266, 1434
SfaNI	GCATC	3 cut(s)	177, 576, 991
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	1 cut(s)	1140
SinI	GGWCC	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	1140
SmlI	CTYRAG	1 cut(s)	1140
SmoI	CTYRAG	1 cut(s)	1140
SpeI	ACTAGT	1 cut(s)	1214
Sse9I	AATT	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
SsiI	CCGC	2 cut(s)	51, 350
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	3 cut(s)	689, 1215, 1275
StyD4I	CCNGG	2 cut(s)	513, 619
TaaI	ACNGT	1 cut(s)	1455
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	6 cut(s)	14, 99, 304, 468, 1141, 1287
TasI	AATT	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
TfiI	GAWTC	9 cut(s)	802, 818, 926, 950, 1061, 1271, 1289, 1313, 1328
Tru1I	TTAA	2 cut(s)	1211, 1334
Tru9I	TTAA	2 cut(s)	1211, 1334
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	6 cut(s)	235, 379, 508, 719, 1004, 1298
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	2 cut(s)	128, 907
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	8 cut(s)	199, 829, 895, 920, 1096, 1321, 1387, 1394
XbaI	TCTAGA	1 cut(s)	1274
XhoI	CTCGAG	1 cut(s)	1140
XmiI	GTMKAC	2 cut(s)	99, 709
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	3 cut(s)	689, 1215, 1275
Zsp2I	ATGCAT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.