Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012430

Physical Location & Seq

Genomic Coordinates Reverse (-)

66600225 .. 66604806

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG422500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTTTCAGGGCTTTAGAAAAATAGATCCGGATCATTATGTATTTGCAAATGAAGGATTTATTCGAGGTCAAAAGCATTTGTTGAAGAATATTTTCAGAAGGAAATATCCGCAGGGCACAGATCAGAGTAAAACATTGCAGCAGAAAGACAATCAGAGAGACGATCCTGATGAACCTTCTGAAGACATTGAAAGTGGTCTGTGGAGGGAAGTTGAGAACCTGAAGATCGATAAGATCTCTCTAAAGCAAGAGTTGGTGAAGCTCAGGCAGCACCAGGAAATATCAGAAAATAACTTGCTCCTCCTGAGAGATCGCCTTCATGGAATGGAGAAGGATCAGCAACAGATGCTCTCATTTCTGGTGATGGCAATGCAAAATCCTGGGTTTTTAGTTCAGCTGGTTCAGTCAAAAGAACATAGCTGGCGCTTCGCTGAAGCTGGAAATATGCTAGAAGAAGTAGATGATGGTAGACCAATGGCTGCTGATGGTGCCATAGTAAGGTACCAACCTCCTATGGATGAAGCACCAGAGCCTGTCTTCACACCACATTCGGGTTCGGAGATTCAACCAGAAATAGATTCTTTTGTGAATTCTGATGGTGTAATAGTAAGGTACCAACCTGTAGGTGAAGCGCCAGATCCTGTATTCACACCGAATTTTGTCTCAGAGAAACAACCAGAATTTGATTCTTATCCCGATGGAGTGGGAGATTCTTTCACGAATTCTGATGGTGCAATAGTAAGGTACCGATCGCCTATGGATGCAGCACCAAAGCCTATACTCACACAGAGTTCAGGCTCAGGAAAACAACCAGAGTTTGATTCTTACCCTGATGGGATGAAAGATTTTTTTGTGAATTCTGATTTAGTGAAAATGCTAATGGATGATAAGTTGAGCCCTCGAGAAAATCATGCCCCATTTATCCTGCCAGATGCTGATGTTGATGATAATGCATGGGAGAAGCTTCTTTTAACTAGTTATTTGTTAGAAAATACTGAAGGTGCAAAGGAAGAAAGAAAAGAGCCCGAGGATTCTAGAATGGAGGTCGAATCAACAGCAGCTGAGTTGGACGAATCCAAAATTTTTGATTCTTTAATAGAGCAAATGAACAAATCAGTTCATGGATCTAATATGGAGAACTCTCAGAATTTGAAATTCATTGGTGAACATCTGGGTCTCATGGCTTCCGAGCCCAACAAGAAACAAGAAACACAGTTGGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

408

Amino Acids

46.41

Weight (kDa)

4.68

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67970
fragaria_vesca	FvH4_4g33360 FvH4_4g33360
malus_domestica	MD13G1018800.v1.1 MD16G1016700.v1.1
prunus_persica	Prupe.1G335100_v2.0.a1
pyrus_communis	pycom13g01590
rosa_chinensis	RchiOBHm_Chr4g0442621
rosa_laevigata	RLG00000005998
rosa_multiflora	Rmu_co8503207.1_g000002 Rmu_sc0025219.1_g000001 Rmu_ssc0000204.1_g000036
rosa_roxburghii	Rroxscaffold_5G00383420
rosa_rugosa	Rorug04G0341400
rosa_samantha	Rh4AG394100 Rh4BG407100 Rh4CG422500 Rh4DG401100
rosa_wichuraiana	Rw4G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	501, 612, 744
AccB1I	GGYRCC	4 cut(s)	488, 501, 612, 744
AccI	GTMKAC	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	6 cut(s)	20, 39, 158, 342, 632, 1132
AcsI	RAATTY	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
AcuI	CTGAAG	4 cut(s)	201, 242, 453, 1017
AfaI	GTAC	3 cut(s)	503, 614, 746
AfiI	CCNNNNNNNGG	2 cut(s)	498, 551
AgsI	TTSAA	4 cut(s)	85, 191, 566, 1153
AhlI	ACTAGT	1 cut(s)	974
AjnI	CCWGG	2 cut(s)	273, 379
AluBI	AGCT	6 cut(s)	262, 397, 420, 437, 964, 1061
AluI	AGCT	6 cut(s)	262, 397, 420, 437, 964, 1061
Alw26I	GTCTC	3 cut(s)	153, 667, 1181
AlwI	GGATC	6 cut(s)	20, 39, 158, 342, 632, 1132
AlwNI	CAGNNNCTG	4 cut(s)	533, 641, 935, 1061
Ama87I	CYCGRG	2 cut(s)	900, 1025
Aor13HI	TCCGGA	1 cut(s)	28
ApeKI	GCWGC	5 cut(s)	139, 268, 479, 764, 1058
ApoI	RAATTY	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
Asp700I	GAANNNNTTC	1 cut(s)	92
Asp718I	GGTACC	3 cut(s)	501, 612, 744
AspLEI	GCGC	2 cut(s)	426, 634
AsuHPI	GGTGA	4 cut(s)	268, 373, 638, 1175
AvaI	CYCGRG	2 cut(s)	900, 1025
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	4 cut(s)	488, 501, 612, 744
BanII	GRGCYC	3 cut(s)	899, 1026, 1194
BbsI	GAAGAC	2 cut(s)	189, 529
BbvI	GCAGC	5 cut(s)	151, 280, 466, 776, 1070
BccI	CCATC	7 cut(s)	358, 458, 479, 590, 692, 722, 827
BciT130I	CCWGG	2 cut(s)	275, 381
BcoDI	GTCTC	3 cut(s)	153, 667, 1181
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	3 cut(s)	449, 975, 1035
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	2 cut(s)	427, 635
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	5 cut(s)	140, 269, 480, 765, 1059
BlsI	GCNGC	5 cut(s)	141, 270, 481, 766, 1060
Bme1390I	CCNGG	2 cut(s)	275, 381
BmeT110I	CYCGRG	2 cut(s)	900, 1025
BmiI	GGNNCC	4 cut(s)	490, 503, 614, 746
BmrFI	CCNGG	2 cut(s)	275, 381
BmsI	GCATC	3 cut(s)	336, 751, 922
BpiI	GAAGAC	2 cut(s)	189, 529
Bpu10I	CCTNAGC	2 cut(s)	263, 799
Bsa29I	ATCGAT	1 cut(s)	228
BsaBI	GATNNNNATC	2 cut(s)	30, 690
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	2 cut(s)	380, 1026
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 551
Bse3DI	GCAATG	2 cut(s)	134, 375
Bse8I	GATNNNNATC	2 cut(s)	30, 690
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	275, 381
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	380, 1026
BseGI	GGATG	4 cut(s)	523, 766, 843, 889
BseJI	GATNNNNATC	2 cut(s)	30, 690
BseLI	CCNNNNNNNGG	2 cut(s)	498, 551
BseMI	GCAATG	2 cut(s)	134, 375
BseMII	CTCAG	6 cut(s)	277, 296, 678, 813, 1053, 1157
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	151, 280, 466, 776, 1070
Bsh1285I	CGRYCG	1 cut(s)	752
BshNI	GGYRCC	4 cut(s)	488, 501, 612, 744
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	752
BsiHKCI	CYCGRG	2 cut(s)	900, 1025
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	498, 551
BsmAI	GTCTC	3 cut(s)	153, 667, 1181
BsmBI	CGTCTC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	1181
BsoBI	CYCGRG	2 cut(s)	900, 1025
Bsp1286I	GDGCHC	4 cut(s)	119, 899, 1026, 1194
Bsp13I	TCCGGA	1 cut(s)	28
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	6 cut(s)	276, 297, 677, 812, 1054, 1156
BspDI	ATCGAT	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	490, 503, 614, 746
BspPI	GGATC	6 cut(s)	20, 39, 158, 342, 632, 1132
BspT107I	GGYRCC	4 cut(s)	488, 501, 612, 744
BspTNI	GGTCTC	1 cut(s)	1181
BsrDI	GCAATG	2 cut(s)	134, 375
BssECI	CCNNGG	2 cut(s)	380, 1026
Bst2UI	CCWGG	2 cut(s)	275, 381
Bst4CI	ACNGT	1 cut(s)	1215
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	6 cut(s)	263, 305, 664, 799, 1062, 1143
BstF5I	GGATG	4 cut(s)	523, 766, 843, 889
BstH2I	RGCGCY	2 cut(s)	427, 635
BstHHI	GCGC	2 cut(s)	426, 634
BstMAI	GTCTC	3 cut(s)	153, 667, 1181
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 346, 488
BstNI	CCWGG	2 cut(s)	275, 381
BstSCI	CCNGG	2 cut(s)	273, 379
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	5 cut(s)	151, 280, 466, 776, 1070
BstV2I	GAAGAC	2 cut(s)	189, 529
BstX2I	RGATCY	4 cut(s)	25, 234, 637, 1124
BstYI	RGATCY	4 cut(s)	25, 234, 637, 1124
Bsu15I	ATCGAT	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	523, 766, 843, 889
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	4 cut(s)	533, 641, 935, 1061
CfoI	GCGC	2 cut(s)	426, 634
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	502, 613, 745
CviAII	CATG	5 cut(s)	320, 911, 954, 1121, 1180
CviQI	GTAC	3 cut(s)	502, 613, 745
DdeI	CTNAG	6 cut(s)	263, 305, 664, 799, 1062, 1143
Eco24I	GRGCYC	3 cut(s)	899, 1026, 1194
Eco31I	GGTCTC	1 cut(s)	1181
Eco57I	CTGAAG	4 cut(s)	201, 242, 453, 1017
Eco88I	CYCGRG	2 cut(s)	900, 1025
EcoRI	GAATTC	3 cut(s)	589, 721, 856
EcoRII	CCWGG	2 cut(s)	273, 379
EcoT22I	ATGCAT	1 cut(s)	955
EcoT38I	GRGCYC	3 cut(s)	899, 1026, 1194
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	5 cut(s)	323, 914, 957, 1124, 1183
FatI	CATG	5 cut(s)	319, 910, 953, 1120, 1179
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	140, 269, 480, 765, 1059
FokI	GGATG	4 cut(s)	530, 773, 850, 896
FriOI	GRGCYC	3 cut(s)	899, 1026, 1194
Fsp4HI	GCNGC	5 cut(s)	140, 269, 480, 765, 1059
FspBI	CTAG	3 cut(s)	449, 975, 1035
GlaI	GCGC	2 cut(s)	425, 633
GluI	GCNGC	5 cut(s)	140, 269, 480, 765, 1059
HaeII	RGCGCY	2 cut(s)	427, 635
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	2 cut(s)	426, 634
Hin1II	CATG	5 cut(s)	323, 914, 957, 1124, 1183
Hin6I	GCGC	2 cut(s)	424, 632
HinP1I	GCGC	2 cut(s)	424, 632
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	9 cut(s)	562, 578, 686, 710, 821, 1031, 1049, 1073, 1088
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	4 cut(s)	268, 373, 638, 1175
Hpy166II	GTNNAC	2 cut(s)	470, 1166
Hpy188III	TCNNGA	8 cut(s)	29, 167, 304, 695, 718, 801, 902, 1035
Hpy8I	GTNNAC	2 cut(s)	470, 1166
HpyAV	CCTTC	6 cut(s)	47, 93, 186, 325, 326, 992
HpyCH4III	ACNGT	1 cut(s)	1215
HpyCH4V	TGCA	7 cut(s)	47, 139, 373, 734, 764, 953, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 346, 488
HpyF3I	CTNAG	6 cut(s)	263, 305, 664, 799, 1062, 1143
Hsp92II	CATG	5 cut(s)	323, 914, 957, 1124, 1183
HspAI	GCGC	2 cut(s)	424, 632
Kpn2I	TCCGGA	1 cut(s)	28
KpnI	GGTACC	3 cut(s)	505, 616, 748
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	5 cut(s)	151, 280, 466, 776, 1070
LweI	GCATC	3 cut(s)	336, 751, 922
MaeI	CTAG	3 cut(s)	449, 975, 1035
MboII	GAAGA	6 cut(s)	97, 194, 235, 464, 529, 1022
MflI	RGATCY	4 cut(s)	25, 234, 637, 1124
MhlI	GDGCHC	4 cut(s)	119, 899, 1026, 1194
MluCI	AATT	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
MmeI	TCCRAC	1 cut(s)	1047
MnlI	CCTC	7 cut(s)	59, 198, 311, 519, 909, 1021, 1036
Mph1103I	ATGCAT	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	971, 1094
MspA1I	CMGCKG	2 cut(s)	397, 1061
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	275, 381
MvaI	CCWGG	2 cut(s)	275, 381
MwoI	GCNNNNNNNGC	3 cut(s)	268, 346, 488
NlaIII	CATG	5 cut(s)	323, 914, 957, 1124, 1183
NlaIV	GGNNCC	4 cut(s)	490, 503, 614, 746
NsiI	ATGCAT	1 cut(s)	955
PaeR7I	CTCGAG	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	9 cut(s)	562, 578, 686, 710, 821, 1031, 1049, 1073, 1088
PkrI	GCNGC	5 cut(s)	141, 270, 481, 766, 1060
Ple19I	CGATCG	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	273, 379
PspGI	CCWGG	2 cut(s)	273, 379
PspN4I	GGNNCC	4 cut(s)	490, 503, 614, 746
PstNI	CAGNNNCTG	4 cut(s)	533, 641, 935, 1061
PsuI	RGATCY	4 cut(s)	25, 234, 637, 1124
PvuI	CGATCG	1 cut(s)	752
PvuII	CAGCTG	2 cut(s)	397, 1061
RsaI	GTAC	3 cut(s)	503, 614, 746
RsaNI	GTAC	3 cut(s)	502, 613, 745
SaqAI	TTAA	2 cut(s)	971, 1094
SatI	GCNGC	5 cut(s)	140, 269, 480, 765, 1059
ScrFI	CCNGG	2 cut(s)	275, 381
SduI	GDGCHC	4 cut(s)	119, 899, 1026, 1194
SfaNI	GCATC	3 cut(s)	336, 751, 922
SfcI	CTRYAG	1 cut(s)	621
Sfr274I	CTCGAG	1 cut(s)	900
SlaI	CTCGAG	1 cut(s)	900
SmlI	CTYRAG	1 cut(s)	900
SmoI	CTYRAG	1 cut(s)	900
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	449, 975, 1035
StyD4I	CCNGG	2 cut(s)	273, 379
TaaI	ACNGT	1 cut(s)	1215
TaqI	TCGA	4 cut(s)	64, 228, 901, 1047
TasI	AATT	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
TfiI	GAWTC	9 cut(s)	562, 578, 686, 710, 821, 1031, 1049, 1073, 1088
Tru1I	TTAA	2 cut(s)	971, 1094
Tru9I	TTAA	2 cut(s)	971, 1094
TseI	GCWGC	5 cut(s)	139, 268, 479, 764, 1058
TspDTI	ATGAA	8 cut(s)	66, 186, 308, 534, 854, 1109, 1121, 1147
XapI	RAATTY	8 cut(s)	589, 655, 680, 721, 856, 1080, 1147, 1154
XbaI	TCTAGA	1 cut(s)	1034
XhoI	CTCGAG	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	3 cut(s)	449, 975, 1035
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.