Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

51420371 .. 51425912

Gene Structure 5542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCGTTTCAACATCTTCAAGGAGAACGTAAAGCACGTGCACAAGGTGAACCAGATGAGTAGGCCTTACAAGCTCAAGCTGAACAAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGTATATGCTAACTCAAAGGTTAGCCACTACCGGTCGTTGCATGGCATCCGGAGGATAACCGGCTTCACGCATGATCAGACTGACAATCTTCCTCAAAGTGTTGACTGGAGGAAGAATGGAGCCGTCACCGGAGTTAAAGACCAAGGACAATGCGTTAGCTACTGGGCATTTTCAACTGTAGTGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTTTATCCGAGCAGGAGCTTGTTGACTGCAATAGAGATAACGAAGGGTGTAGTGGCGGATTGATGGACAACGCATTTGATTTCATAAAGAAAACTGGTGGAATCACAAGAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGATGATGAATGCTCCTCTGGTGGTAATTGATGGGTACGAAAATGTACCAGAAAATAACGAGAATGCCTTGATGAAAGCCGTGGCGAACCAACCTGTATCGGTTGCAATTGATGCTGATGGTAGAGATTTTCAGTTCTACAGAGAGGGTGTGTTCACCGGGCCTTGTGGAACTGAGATGAACCATGGTGTGGCAGTCGTTGGGTATGGAGCAACTCAAGATGGAACCAAGTACTGGATTGTGAAGAACTCATGGGGAACTGAATGGGGAGAGAAGGGTTTCATAAGGATGCAACGTGGAGTTGAAGCAGAAGACGGGCTGTGTGGAATTGCTAAGGAGGCCTCCTACGGTCCTACCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

289

Amino Acids

32.25

Weight (kDa)

6.18

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	2 - 38	2.7e-11	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	71 - 285	1.2e-81	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	697, 741
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	92, 405
AcvI	CACGTG	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	3 cut(s)	545, 555, 740
AfiI	CCNNNNNNNGG	2 cut(s)	697, 741
AgeI	ACCGGT	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	10, 19, 297, 812
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	73, 79, 282, 343, 367
AluI	AGCT	5 cut(s)	73, 79, 282, 343, 367
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	4 cut(s)	62, 316, 668, 846
ApaLI	GTGCAC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AsiGI	ACCGGT	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	785
AspS9I	GGNCC	3 cut(s)	316, 668, 857
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	3 cut(s)	58, 241, 655
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	4 cut(s)	406, 533, 620, 722
BceAI	ACGGC	3 cut(s)	230, 467, 572
BciT130I	CCWGG	1 cut(s)	508
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	300, 646
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	508, 667
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	3 cut(s)	316, 668, 857
BmiI	GGNNCC	2 cut(s)	244, 733
BmrFI	CCNGG	2 cut(s)	508, 667
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	177, 610, 786
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	2 cut(s)	59, 708
BpuMI	CCSGG	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	265, 588, 691
BsaWI	WCCGGW	3 cut(s)	153, 171, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 741
Bse118I	RCCGGY	2 cut(s)	153, 182
Bse1I	ACTGG	4 cut(s)	233, 290, 448, 746
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	265, 588, 691
BseGI	GGATG	4 cut(s)	168, 503, 516, 801
BseLI	CCNNNNNNNGG	2 cut(s)	697, 741
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	4 cut(s)	233, 290, 448, 746
BseRI	GAGGAG	1 cut(s)	513
BseSI	GKGCMC	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	4 cut(s)	64, 318, 670, 848
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	154, 172, 183, 252, 666
BslI	CCNNNNNNNGG	2 cut(s)	697, 741
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmI	GAATGC	2 cut(s)	523, 577
BsnI	GGCC	4 cut(s)	64, 318, 670, 848
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	2 cut(s)	92, 405
BspANI	GGCC	4 cut(s)	64, 318, 670, 848
BspCNI	CTCAG	1 cut(s)	673
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	244, 733
BsrFI	RCCGGY	2 cut(s)	153, 182
BsrI	ACTGG	4 cut(s)	233, 290, 448, 746
BssAI	RCCGGY	2 cut(s)	153, 182
BssECI	CCNNGG	3 cut(s)	265, 588, 691
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	265, 691
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	301, 857
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	681, 840
BstDSI	CCRYGG	2 cut(s)	588, 691
BstF5I	GGATG	4 cut(s)	168, 503, 516, 801
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 620, 845
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	506, 665
BstSFI	CTRYAG	2 cut(s)	300, 646
BstSLI	GKGCMC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	825
BsuRI	GGCC	4 cut(s)	64, 318, 670, 848
BtgI	CCRYGG	2 cut(s)	588, 691
BtsCI	GGATG	4 cut(s)	168, 503, 516, 801
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cfr10I	RCCGGY	2 cut(s)	153, 182
Cfr13I	GGNCC	3 cut(s)	316, 668, 857
Csp6I	GTAC	3 cut(s)	544, 554, 739
CspAI	ACCGGT	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	6 cut(s)	97, 164, 194, 692, 759, 867
CviQI	GTAC	3 cut(s)	544, 554, 739
DdeI	CTNAG	2 cut(s)	681, 840
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	265, 691
Eco147I	AGGCCT	2 cut(s)	64, 848
Eco47I	GGWCC	1 cut(s)	857
Eco72I	CACGTG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	2 cut(s)	265, 691
ErhI	CCWWGG	2 cut(s)	265, 691
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	6 cut(s)	100, 167, 197, 695, 762, 870
FatI	CATG	6 cut(s)	96, 163, 193, 691, 758, 866
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	4 cut(s)	155, 490, 523, 808
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	4 cut(s)	64, 318, 670, 848
HapII	CCGG	5 cut(s)	154, 172, 183, 252, 666
Hin1II	CATG	6 cut(s)	100, 167, 197, 695, 762, 870
HincII	GTYRAC	2 cut(s)	226, 373
HindII	GTYRAC	2 cut(s)	226, 373
HinfI	GANTC	3 cut(s)	450, 491, 500
HpaII	CCGG	5 cut(s)	154, 172, 183, 252, 666
HphI	GGTGA	3 cut(s)	58, 241, 655
Hpy166II	GTNNAC	6 cut(s)	40, 49, 118, 226, 373, 663
Hpy188I	TCNGA	2 cut(s)	201, 358
Hpy188III	TCNNGA	2 cut(s)	172, 725
Hpy8I	GTNNAC	6 cut(s)	40, 49, 118, 226, 373, 663
HpyAV	CCTTC	2 cut(s)	386, 775
HpyCH4III	ACNGT	2 cut(s)	301, 857
HpyCH4IV	ACGT	3 cut(s)	27, 36, 802
HpyCH4V	TGCA	5 cut(s)	40, 163, 378, 614, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 620, 845
HpyF3I	CTNAG	2 cut(s)	681, 840
HpySE526I	ACGT	3 cut(s)	27, 36, 802
Hsp92II	CATG	6 cut(s)	100, 167, 197, 695, 762, 870
Kpn2I	TCCGGA	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	4 cut(s)	242, 364, 526, 716
LweI	GCATC	3 cut(s)	177, 610, 786
MaeII	ACGT	3 cut(s)	27, 36, 802
MaeIII	GTNAC	2 cut(s)	247, 497
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	5 cut(s)	7, 203, 247, 763, 830
MfeI	CAATTG	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	327, 534, 615, 834
MlyI	GAGTC	2 cut(s)	494, 500
MnlI	CCTC	9 cut(s)	168, 225, 225, 307, 329, 534, 646, 838, 859
MroI	TCCGGA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	785
MseI	TTAA	2 cut(s)	258, 330
MslI	CAYNNNNRTG	1 cut(s)	794
MspI	CCGG	5 cut(s)	154, 172, 183, 252, 666
MspR9I	CCNGG	2 cut(s)	508, 667
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	2 cut(s)	523, 577
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	70, 620, 845
NciI	CCSGG	1 cut(s)	667
NcoI	CCATGG	1 cut(s)	691
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	6 cut(s)	100, 167, 197, 695, 762, 870
NlaIV	GGNNCC	2 cut(s)	244, 733
NmuCI	GTSAC	2 cut(s)	247, 497
PceI	AGGCCT	2 cut(s)	64, 848
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	2 cut(s)	523, 577
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	1 cut(s)	450
PflMI	CCANNNNNTGG	2 cut(s)	697, 741
PfoI	TCCNGGA	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	153
PleI	GAGTC	2 cut(s)	494, 499
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	494, 499
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	506
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	244, 733
PspPI	GGNCC	3 cut(s)	316, 668, 857
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
RsaI	GTAC	3 cut(s)	545, 555, 740
RsaNI	GTAC	3 cut(s)	544, 554, 739
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	258, 330
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	316, 668, 857
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	2 cut(s)	494, 500
ScrFI	CCNGG	2 cut(s)	508, 667
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	177, 610, 786
SfcI	CTRYAG	2 cut(s)	300, 646
SinI	GGWCC	1 cut(s)	857
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	2 cut(s)	74, 723
SmoI	CTYRAG	2 cut(s)	74, 723
Sse9I	AATT	4 cut(s)	327, 534, 615, 834
SseBI	AGGCCT	2 cut(s)	64, 848
SsiI	CCGC	2 cut(s)	92, 405
StuI	AGGCCT	2 cut(s)	64, 848
StyD4I	CCNGG	2 cut(s)	506, 665
StyI	CCWWGG	2 cut(s)	265, 691
TaaI	ACNGT	2 cut(s)	301, 857
TaiI	ACGT	3 cut(s)	30, 39, 805
TasI	AATT	4 cut(s)	327, 534, 615, 834
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	2 cut(s)	258, 330
Tru9I	TTAA	2 cut(s)	258, 330
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	247, 497
Tsp45I	GTSAC	2 cut(s)	247, 497
TspDTI	ATGAA	5 cut(s)	421, 530, 596, 701, 778
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	2 cut(s)	697, 741
VneI	GTGCAC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.