Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

192337 .. 193896

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgggtagtgatcttgacaatggctatggtgacttggagaagcagatgctggttcttcacgaacacgaagagaagcacttcatgtccagtgagattgtccgtgacgtcattctcggcgtctccgacggtctcactgtcccttttgccctcgccgcggggttgtccggcgctgatgtcagctcctccattatcctcattgccggcattgctgaggttgccgccggtgccatctccatgggacttggcgggtatcttgcggcgaagagtgaagaagatcattacaagaaagaactaaagagggagcaagatgaaatcatcgccgtccctgatatagcacgtgaatatgggcctgtggtgaatgctctaagaaggaaccctcaagcttggcttgatttcatgatgaaatttgaactaggactcgacaagccagacccaatgagagcgctgcagagtgcaatgacaatagccttttcatacgtctgtggtggactggtgcctctccttccctacatgctcattccagttgctacaaaggcggtgcttgcatctgtggtggtcaccatagtggcattgctgatcttcggctttgcaaagggtcacttcaccggaactcaacctttcaagagcgctttccaaaccgccttcattggagccatcgcatccgccgcagcttattccattgcgaaactcttccaatcctaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

235

Amino Acids

25.2

Weight (kDa)

5.33

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	224, 493
AccII	CGCG	1 cut(s)	155
AciI	CCGC	9 cut(s)	153, 155, 219, 246, 257, 536, 639, 663, 666
AcsI	RAATTY	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	2 cut(s)	105, 117
AfeI	AGCGCT	2 cut(s)	444, 628
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	410, 622
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	3 cut(s)	180, 383, 671
AluI	AGCT	3 cut(s)	180, 383, 671
Alw26I	GTCTC	2 cut(s)	124, 134
AlwNI	CAGNNNCTG	1 cut(s)	49
Aor51HI	AGCGCT	2 cut(s)	444, 628
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	445, 668
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	2 cut(s)	77, 689
AspLEI	GCGC	3 cut(s)	170, 445, 629
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	4 cut(s)	41, 367, 550, 595
BanI	GGYRCC	2 cut(s)	224, 493
BbrPI	CACGTG	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	432, 680
BccI	CCATC	2 cut(s)	236, 662
BceAI	ACGGC	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	124, 134
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	3 cut(s)	171, 446, 630
BisI	GCNGC	6 cut(s)	153, 219, 258, 446, 666, 669
BlsI	GCNGC	6 cut(s)	154, 220, 259, 447, 667, 670
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	4 cut(s)	226, 374, 495, 652
BmsI	GCATC	3 cut(s)	36, 554, 668
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	105, 117
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	153, 234
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	200, 221
Bse1I	ACTGG	3 cut(s)	87, 495, 521
Bse3DI	GCAATG	5 cut(s)	195, 204, 462, 569, 678
BseDI	CCNNGG	2 cut(s)	153, 234
BseGI	GGATG	1 cut(s)	659
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	5 cut(s)	195, 204, 462, 569, 678
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	87, 495, 521
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	432, 680
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	349
BshNI	GGYRCC	2 cut(s)	224, 493
BsiSI	CCGG	4 cut(s)	165, 201, 222, 606
BslFI	GGGAC	3 cut(s)	122, 252, 308
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	124, 134
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	3 cut(s)	122, 252, 308
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	10, 274, 576
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	9 cut(s)	153, 155, 219, 246, 257, 536, 639, 663, 666
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	226, 374, 495, 652
BspMAI	CTGCAG	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	224, 493
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	5 cut(s)	195, 204, 462, 569, 678
BsrFI	RCCGGY	2 cut(s)	200, 221
BsrI	ACTGG	3 cut(s)	87, 495, 521
BssAI	RCCGGY	2 cut(s)	200, 221
BssECI	CCNNGG	2 cut(s)	153, 234
BssMI	GATC	3 cut(s)	10, 274, 576
BssNI	GRCGYC	2 cut(s)	105, 117
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	128, 136
Bst6I	CTCTTC	3 cut(s)	63, 257, 695
BstACI	GRCGYC	2 cut(s)	105, 117
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	202, 543
BstDEI	CTNAG	2 cut(s)	210, 365
BstDSI	CCRYGG	2 cut(s)	153, 234
BstEII	GGTNACC	1 cut(s)	556
BstF5I	GGATG	1 cut(s)	659
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	3 cut(s)	171, 446, 630
BstHHI	GCGC	3 cut(s)	170, 445, 629
BstKTI	GATC	3 cut(s)	13, 277, 579
BstMAI	GTCTC	2 cut(s)	124, 134
BstMBI	GATC	3 cut(s)	10, 274, 576
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 206, 215, 224, 533, 542, 665
BstNSI	RCATGY	1 cut(s)	514
BstPI	GGTNACC	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	432, 680
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	2 cut(s)	153, 234
BtgZI	GCGATG	2 cut(s)	301, 640
BtsCI	GGATG	1 cut(s)	659
BtsIMutI	CAGTG	2 cut(s)	94, 132
Cac8I	GCNNGC	2 cut(s)	202, 543
CaiI	CAGNNNCTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	3 cut(s)	170, 445, 629
Cfr10I	RCCGGY	2 cut(s)	200, 221
Cfr13I	GGNCC	1 cut(s)	347
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	106
CviAII	CATG	4 cut(s)	82, 235, 397, 511
DdeI	CTNAG	2 cut(s)	210, 365
DpnI	GATC	3 cut(s)	12, 276, 578
DpnII	GATC	3 cut(s)	10, 274, 576
Eam1104I	CTCTTC	3 cut(s)	63, 257, 695
EarI	CTCTTC	3 cut(s)	63, 257, 695
EciI	GGCGGA	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	134
Eco47III	AGCGCT	2 cut(s)	444, 628
Eco72I	CACGTG	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	4 cut(s)	85, 238, 400, 514
FaiI	YATR	9 cut(s)	27, 83, 236, 332, 345, 398, 475, 512, 563
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 584, 616
FaqI	GGGAC	3 cut(s)	122, 252, 308
FatI	CATG	4 cut(s)	81, 234, 396, 510
FauI	CCCGC	2 cut(s)	148, 239
Fnu4HI	GCNGC	6 cut(s)	153, 219, 258, 446, 666, 669
FokI	GGATG	1 cut(s)	646
Fsp4HI	GCNGC	6 cut(s)	153, 219, 258, 446, 666, 669
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	3 cut(s)	169, 444, 628
GluI	GCNGC	6 cut(s)	153, 219, 258, 446, 666, 669
HaeII	RGCGCY	3 cut(s)	171, 446, 630
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	4 cut(s)	165, 201, 222, 606
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	170, 445, 629
Hin1I	GRCGYC	2 cut(s)	105, 117
Hin1II	CATG	4 cut(s)	85, 238, 400, 514
Hin6I	GCGC	3 cut(s)	168, 443, 627
HinP1I	GCGC	3 cut(s)	168, 443, 627
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	4 cut(s)	165, 201, 222, 606
HphI	GGTGA	4 cut(s)	41, 367, 550, 595
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	14, 59, 397, 622
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	363, 512, 652
HpyCH4III	ACNGT	2 cut(s)	128, 136
HpyCH4IV	ACGT	3 cut(s)	105, 337, 477
HpyCH4V	TGCA	4 cut(s)	448, 455, 545, 590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 206, 215, 224, 533, 542, 665
HpyF3I	CTNAG	2 cut(s)	210, 365
HpySE526I	ACGT	3 cut(s)	105, 337, 477
Hsp92I	GRCGYC	2 cut(s)	105, 117
Hsp92II	CATG	4 cut(s)	85, 238, 400, 514
HspAI	GCGC	3 cut(s)	168, 443, 627
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	10, 274, 576
LmnI	GCTCC	3 cut(s)	185, 301, 650
Lsp1109I	GCAGC	2 cut(s)	432, 680
LweI	GCATC	3 cut(s)	36, 554, 668
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	105, 337, 477
MaeIII	GTNAC	4 cut(s)	29, 101, 556, 596
MalI	GATC	3 cut(s)	12, 276, 578
MboI	GATC	3 cut(s)	10, 274, 576
MboII	GAAGA	7 cut(s)	47, 80, 274, 281, 284, 571, 682
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	158, 193, 203, 205, 291, 387, 507
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	2 cut(s)	77, 689
MslI	CAYNNNNRTG	2 cut(s)	233, 563
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	4 cut(s)	165, 201, 222, 606
Mva1269I	GAATGC	1 cut(s)	364
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	7 cut(s)	152, 206, 215, 224, 533, 542, 665
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	10, 274, 576
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	4 cut(s)	85, 238, 400, 514
NlaIV	GGNNCC	4 cut(s)	226, 374, 495, 652
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	4 cut(s)	29, 101, 556, 596
NspI	RCATGY	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	563
PagI	TCATGA	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	77, 689
PkrI	GCNGC	6 cut(s)	154, 220, 259, 447, 667, 670
PleI	GAGTC	1 cut(s)	411
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	338
PspEI	GGTNACC	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	226, 374, 495, 652
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	233, 563
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	6 cut(s)	153, 219, 258, 446, 666, 669
Sau3AI	GATC	3 cut(s)	10, 274, 576
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	411
SetI	ASST	8 cut(s)	108, 182, 216, 340, 385, 480, 619, 673
SfaNI	GCATC	3 cut(s)	36, 554, 668
SfcI	CTRYAG	1 cut(s)	446
Sfr303I	CCGCGG	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	233, 563
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	9 cut(s)	153, 155, 219, 246, 257, 536, 639, 663, 666
SspMI	CTAG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	128, 136
TaiI	ACGT	3 cut(s)	108, 340, 480
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	404
TauI	GCSGC	4 cut(s)	155, 221, 260, 668
TscAI	CASTG	2 cut(s)	94, 139
TseFI	GTSAC	4 cut(s)	29, 101, 556, 596
TseI	GCWGC	2 cut(s)	445, 668
Tsp45I	GTSAC	4 cut(s)	29, 101, 556, 596
TspDTI	ATGAA	6 cut(s)	70, 324, 385, 416, 462, 634
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	94, 139
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	514
XmnI	GAANNNNTTC	2 cut(s)	77, 689
XspI	CTAG	1 cut(s)	413
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.