Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Forward (+)

51400927 .. 51403799

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGGCTGAAACCGGTTTCGTCCGGTTTCCGGGTGGCCTGGACCCGGGAGCCGAGGAGTTCAGGCCCAGAAACCCGAACCCGATACCCCTTTTCAGCCCACCACCACCACCGCCTCTGCCACACCAAGTTTACTATCCCTACCCACCGCCACCGCCACCGCCGCCCATGAACGAAGTCGTGGCGGTGCCCTACGTGCCGTCACCCGCCGCGTACGTTAGCGCGGTGACGGTGCCGGCCCCGATCCCGCCTCCGGCCGCGGGGCCGACTCGGGCGGTGCTGCTGAGGCCGGTGCCGTGTGACGTCAGCGAGGTGACGATTCGGCGGGAGTTGGAGGCGTTCGGGCAGGTGAGGTGGGTCCAGATGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTCTACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGATTCGGGAGCAGCACATGCAACACCAACAACCCACCACCCGCCCTCCTCGTAATTCCGGTCCGTACCACCGGAGCTCCTCCGCCGTGATTGTCAGCCCCGACGTGTGGGCCCACTTCGTGATTCCGGTGCACACCGCAATCCCGGACGGCCACAACCAAGGCACCATCGTGATTTTCAATCTCGACTCGGCGGTGACCACCTCCAGCGTCAGGCAGACGTTCCAAGCTTTTGGTGCTGTGAAGGAATTGAGGGAGACACCTTCGAAGAAGCACCAGAAATTCGTGGAGTTTTTCGATGTCAGACACGCTGCTAGAGCTCTCAAGGAGATGAACGGCAAGGAGATCCATGGCAAACAGATTGTGATCGAGTTCAGTCGCCCCGGAGGCAACAGCTGGAAGAAGCTGAATTCTCTCACCACCACTGCCGTCCCAACTGTCGTCTCTGCCAACGTTGCTTCGCCTGAGTTATATCTGCCCGAGCCCTTCTCCGGGCACTCTCGTTTCAATGCAGTCTCGCCGCTAATGTATGGTTCACAAGGCCAGTTTTCGAGTAGGACTAATTCGGGTAGTGGAAATGTTGGTGTGGAGTCTCTAGTGGCGGAGTTGAATTTGGGCGGTGGAATTGAAGAGAGGGAGTCAGTGGGGCATTCCAGAAGGGCTTCTTCGTCGAAGAAGCAAAGCAGCCAGGCAATGGTAACAAGTCCAAGGCAGCTGCAGCAACCGCCACCGAGGAGTAGTAGGGGAAAGAGAGGAAAGCAGCCCAAGAAGTATGATACTCGCTTTCTAATCAAAGAAGATGTCATGGTTGAATCCACAAGCGATTCAAGAACCACTCTGATGATCAAAAACATACCCAACAAATACAGTCAGAAGCTGCTATTGAGTATGCTGGACAACCATTGCATTCACTGCAACGAGCAGATTCTTCGCGACGGCGATGAAGACCAGCCTTTGTCCTCCTACGATTTCGTTTATCTCCCCATTGATTTCAATAACAAATGCAATGTAGGTTATGGGTTTGTGAACATGACAAGCCCAGAGGCAACATGGAGGCTTTACAAAGCCTTTCATCACCAAAATTGGGAGGTCTTCAACTCCAGAAAAATCTGTGAAGTCACCTACGCAAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTTCAAGAACTCGAAGTTCCCGAGCGAAATGGATCACTACTTGCCGGTTGTGTTTACGCCGCCCCGGGACGGCAAGCTTCTGACGGATCCACTCCCCATCTTCGGCATCCAACACAAGTCCGGCAGCAACTCCTCCGCCGCCGTTAATCACCCCATTACTCTCCTCCTGCCTCCATCACATCAACATAACCATGATGACATGGATGACTCTGACCACTGTAGTAGCCGTAACGGCGGCGTTCTGGGTATTAATGACGACCAGGACGACGACGACCAAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

625

Amino Acids

69.49

Weight (kDa)

6.96

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	201 - 265	8.3e-11	RNA recognition motif
RRM_2	PF04059	421 - 533	5e-33	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AatII	GACGTC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	4 cut(s)	184, 229, 289, 596
AccB7I	CCANNNNNTGG	1 cut(s)	1126
AccII	CGCG	4 cut(s)	209, 221, 257, 1365
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	6 cut(s)	235, 389, 772, 1632, 1673, 1686
AcoI	YGGCCR	2 cut(s)	252, 583
AcsI	RAATTY	3 cut(s)	713, 841, 1042
AcyI	GRCGYC	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	212, 500
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	3 cut(s)	36, 1119, 1851
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	9 cut(s)	510, 662, 752, 828, 838, 1147, 1309, 1669, 1875
AluI	AGCT	9 cut(s)	510, 662, 752, 828, 838, 1147, 1309, 1669, 1875
Alw21I	GWGCWC	4 cut(s)	512, 567, 754, 1593
Alw26I	GTCTC	4 cut(s)	683, 880, 952, 1029
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	6 cut(s)	235, 389, 772, 1632, 1673, 1686
AlwNI	CAGNNNCTG	1 cut(s)	1309
Ama87I	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	563
ApoI	RAATTY	3 cut(s)	713, 841, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	1218, 1250
AseI	ATTAAT	1 cut(s)	1842
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	1093
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	9 cut(s)	40, 63, 235, 260, 355, 369, 494, 543, 544
AsuC2I	CCSGG	8 cut(s)	30, 44, 45, 578, 816, 925, 1657, 1658
AsuHPI	GGTGA	9 cut(s)	192, 235, 322, 358, 640, 841, 1499, 1543, 1733
AsuII	TTCGAA	1 cut(s)	698
AvaI	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
AvaII	GGWCC	4 cut(s)	40, 355, 369, 494
BaeGI	GKGCMC	4 cut(s)	189, 547, 567, 930
BamHI	GGATCC	1 cut(s)	1678
BanI	GGYRCC	4 cut(s)	184, 229, 289, 596
BanII	GRGCYC	4 cut(s)	512, 547, 754, 918
BbsI	GAAGAC	2 cut(s)	1383, 1516
Bbv12I	GWGCWC	4 cut(s)	512, 567, 754, 1593
BbvCI	CCTCAGC	1 cut(s)	281
BccI	CCATC	4 cut(s)	355, 608, 1697, 1774
BcgI	CGANNNNNNTGC	2 cut(s)	1343, 1377
BciT130I	CCWGG	3 cut(s)	38, 1121, 1853
BclI	TGATCA	1 cut(s)	1275
BcnI	CCSGG	8 cut(s)	30, 44, 45, 578, 816, 925, 1657, 1658
BcoDI	GTCTC	4 cut(s)	683, 880, 952, 1029
BfaI	CTAG	3 cut(s)	747, 1028, 1876
BfmI	CTRYAG	2 cut(s)	1148, 1810
BfuAI	ACCTGC	1 cut(s)	334
BglI	GCCNNNNNGGC	2 cut(s)	819, 1824
Bme18I	GGWCC	4 cut(s)	40, 355, 369, 494
BmeT110I	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	9 cut(s)	40, 63, 235, 260, 355, 369, 494, 543, 544
BmsI	GCATC	1 cut(s)	1707
BpiI	GAAGAC	2 cut(s)	1383, 1516
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
BpmI	CTGGAG	2 cut(s)	622, 1516
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	8 cut(s)	30, 44, 45, 578, 816, 925, 1657, 1658
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	300
BsaWI	WCCGGW	5 cut(s)	11, 21, 491, 504, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 494, 524
Bse118I	RCCGGY	4 cut(s)	11, 232, 286, 1636
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	3 cut(s)	1131, 1333, 1444
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	38, 1121, 1853
BseGI	GGATG	2 cut(s)	1698, 1801
BseJI	GATNNNNATC	1 cut(s)	797
BseMI	GCAATG	3 cut(s)	1131, 1333, 1444
BseMII	CTCAG	3 cut(s)	272, 421, 888
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	6 cut(s)	68, 471, 502, 1180, 1714, 1745
BseSI	GKGCMC	4 cut(s)	189, 547, 567, 930
BseX3I	CGGCCG	1 cut(s)	252
Bsh1236I	CGCG	4 cut(s)	209, 221, 257, 1365
Bsh1285I	CGRYCG	1 cut(s)	255
BshNI	GGYRCC	4 cut(s)	184, 229, 289, 596
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	4 cut(s)	512, 567, 754, 1593
BsiHKCI	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
BsiWI	CGTACG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	848, 1673
BsmAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BsmBI	CGTCTC	1 cut(s)	880
BsmFI	GGGAC	2 cut(s)	848, 1673
BsmI	GAATGC	2 cut(s)	1081, 1338
BsoBI	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
Bsp119I	TTCGAA	1 cut(s)	698
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	8 cut(s)	189, 512, 547, 567, 754, 918, 930, 1593
Bsp143I	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
Bsp19I	CCATGG	1 cut(s)	781
Bsp68I	TCGCGA	1 cut(s)	1365
BspCNI	CTCAG	3 cut(s)	273, 420, 889
BspFNI	CGCG	4 cut(s)	209, 221, 257, 1365
BspMAI	CTGCAG	1 cut(s)	1152
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	6 cut(s)	235, 389, 772, 1632, 1673, 1686
BspT104I	TTCGAA	1 cut(s)	698
BspT107I	GGYRCC	4 cut(s)	184, 229, 289, 596
BsrDI	GCAATG	3 cut(s)	1131, 1333, 1444
BsrFI	RCCGGY	4 cut(s)	11, 232, 286, 1636
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	4 cut(s)	11, 232, 286, 1636
BssMI	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	4 cut(s)	426, 592, 781, 1139
Bst2UI	CCWGG	3 cut(s)	38, 1121, 1853
Bst4CI	ACNGT	5 cut(s)	229, 391, 871, 1301, 1811
Bst6I	CTCTTC	1 cut(s)	1056
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	2 cut(s)	451, 1344
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	234, 414, 1667
BstDEI	CTNAG	3 cut(s)	281, 407, 897
BstDSI	CCRYGG	2 cut(s)	255, 781
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	1698, 1801
BstFNI	CGCG	4 cut(s)	209, 221, 257, 1365
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
BstMAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BstMBI	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
BstMCI	CGRYCG	1 cut(s)	255
BstNI	CCWGG	3 cut(s)	38, 1121, 1853
BstNSI	RCATGY	2 cut(s)	416, 454
BstPI	GGTNACC	1 cut(s)	628
BstSFI	CTRYAG	2 cut(s)	1148, 1810
BstSLI	GKGCMC	4 cut(s)	189, 547, 567, 930
BstUI	CGCG	4 cut(s)	209, 221, 257, 1365
BstV2I	GAAGAC	2 cut(s)	1383, 1516
BstX2I	RGATCY	2 cut(s)	777, 1678
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	2 cut(s)	777, 1678
BstZI	CGGCCG	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	255, 781
BtgZI	GCGATG	1 cut(s)	1386
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	1698, 1801
BtsI	GCAGTG	2 cut(s)	855, 1342
BtsIMutI	CAGTG	4 cut(s)	855, 1080, 1342, 1807
BtuMI	TCGCGA	1 cut(s)	1365
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	234, 414, 1667
CaiI	CAGNNNCTG	1 cut(s)	1309
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	4 cut(s)	11, 232, 286, 1636
Cfr13I	GGNCC	9 cut(s)	40, 63, 235, 260, 355, 369, 494, 543, 544
Cfr42I	CCGCGG	1 cut(s)	258
Cfr9I	CCCGGG	2 cut(s)	43, 1656
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	211, 499
CspAI	ACCGGT	1 cut(s)	11
CspI	CGGWCCG	1 cut(s)	494
CviAII	CATG	9 cut(s)	166, 413, 451, 782, 1237, 1462, 1482, 1784, 1792
CviQI	GTAC	2 cut(s)	211, 499
DdeI	CTNAG	3 cut(s)	281, 407, 897
DpnI	GATC	8 cut(s)	242, 383, 405, 779, 800, 1277, 1626, 1680
DpnII	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
DraIII	CACNNNGTG	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	252, 583
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	4 cut(s)	446, 505, 1049, 1717
Ecl136II	GAGCTC	2 cut(s)	510, 752
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	4 cut(s)	426, 592, 781, 1139
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	4 cut(s)	512, 547, 754, 918
Eco47I	GGWCC	4 cut(s)	40, 355, 369, 494
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	2 cut(s)	510, 752
Eco88I	CYCGRG	5 cut(s)	43, 267, 911, 1612, 1656
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	2 cut(s)	510, 752
EcoO109I	RGGNCCY	1 cut(s)	369
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	36, 1119, 1851
EcoT14I	CCWWGG	4 cut(s)	426, 592, 781, 1139
EcoT38I	GRGCYC	4 cut(s)	512, 547, 754, 918
ErhI	CCWWGG	4 cut(s)	426, 592, 781, 1139
Esp3I	CGTCTC	1 cut(s)	880
FaeI	CATG	9 cut(s)	169, 416, 454, 785, 1240, 1465, 1485, 1787, 1795
FalI	AAGNNNNNCTT	4 cut(s)	1081, 1113, 1577, 1609
FaqI	GGGAC	2 cut(s)	848, 1673
FatI	CATG	9 cut(s)	165, 412, 450, 781, 1236, 1461, 1481, 1783, 1791
FauI	CCCGC	5 cut(s)	211, 250, 252, 315, 482
FbaI	TGATCA	1 cut(s)	1275
FokI	GGATG	2 cut(s)	1685, 1808
FriOI	GRGCYC	4 cut(s)	512, 547, 754, 918
FspBI	CTAG	3 cut(s)	747, 1028, 1876
GlaI	GCGC	1 cut(s)	220
GsuI	CTGGAG	2 cut(s)	622, 1516
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	9 cut(s)	169, 416, 454, 785, 1240, 1465, 1485, 1787, 1795
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	2 cut(s)	660, 1667
HphI	GGTGA	9 cut(s)	192, 235, 322, 358, 640, 841, 1499, 1543, 1733
Hpy166II	GTNNAC	5 cut(s)	130, 565, 968, 1459, 1647
Hpy188I	TCNGA	5 cut(s)	737, 1272, 1305, 1674, 1804
Hpy8I	GTNNAC	5 cut(s)	130, 565, 968, 1459, 1647
Hpy99I	CGWCG	6 cut(s)	380, 539, 1105, 1370, 1862, 1865
HpyAV	CCTTC	6 cut(s)	415, 670, 705, 928, 1083, 1579
HpyCH4III	ACNGT	5 cut(s)	229, 391, 871, 1301, 1811
HpyCH4IV	ACGT	6 cut(s)	192, 213, 300, 537, 653, 885
HpyCH4V	TGCA	8 cut(s)	416, 454, 565, 944, 1150, 1338, 1347, 1437
HpyF3I	CTNAG	3 cut(s)	281, 407, 897
HpySE526I	ACGT	6 cut(s)	192, 213, 300, 537, 653, 885
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	9 cut(s)	169, 416, 454, 785, 1240, 1465, 1485, 1787, 1795
HspAI	GCGC	1 cut(s)	219
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	1275
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
LmnI	GCTCC	5 cut(s)	47, 442, 507, 515, 1588
LweI	GCATC	1 cut(s)	1707
MaeI	CTAG	3 cut(s)	747, 1028, 1876
MaeII	ACGT	6 cut(s)	192, 213, 300, 537, 653, 885
MaeIII	GTNAC	9 cut(s)	198, 223, 296, 310, 385, 628, 1129, 1549, 1820
MalI	GATC	8 cut(s)	242, 383, 405, 779, 800, 1277, 1626, 1680
MboI	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
MflI	RGATCY	2 cut(s)	777, 1678
MhlI	GDGCHC	8 cut(s)	189, 512, 547, 567, 754, 918, 930, 1593
MluCI	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1513
MlyI	GAGTC	5 cut(s)	259, 614, 1031, 1079, 1793
MmeI	TCCRAC	2 cut(s)	309, 1726
MroNI	GCCGGC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	1093
MseI	TTAA	2 cut(s)	1737, 1842
MslI	CAYNNNNRTG	3 cut(s)	602, 1271, 1782
MspA1I	CMGCKG	3 cut(s)	257, 828, 1147
Mva1269I	GAATGC	2 cut(s)	1081, 1338
MvaI	CCWGG	3 cut(s)	38, 1121, 1853
MvnI	CGCG	4 cut(s)	209, 221, 257, 1365
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	8 cut(s)	30, 44, 45, 578, 816, 925, 1657, 1658
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	9 cut(s)	169, 416, 454, 785, 1240, 1465, 1485, 1787, 1795
NmeAIII	GCCGAG	2 cut(s)	76, 602
NmuCI	GTSAC	7 cut(s)	198, 223, 296, 310, 385, 628, 1549
NruI	TCGCGA	1 cut(s)	1365
NspI	RCATGY	2 cut(s)	416, 454
NspV	TTCGAA	1 cut(s)	698
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	1610, 1854
PctI	GAATGC	2 cut(s)	1081, 1338
PdiI	GCCGGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	1093
PfeI	GAWTC	6 cut(s)	316, 436, 556, 1244, 1256, 1357
Pfl23II	CGTACG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	1126
PfoI	TCCNGGA	1 cut(s)	576
PinAI	ACCGGT	1 cut(s)	11
PleI	GAGTC	5 cut(s)	259, 614, 1030, 1078, 1793
PpsI	GAGTC	5 cut(s)	259, 614, 1030, 1078, 1793
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	1842
Psp124BI	GAGCTC	2 cut(s)	512, 754
Psp1406I	AACGTT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	3 cut(s)	36, 1119, 1851
PspEI	GGTNACC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	36, 1119, 1851
PspLI	CGTACG	1 cut(s)	210
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	9 cut(s)	40, 63, 235, 260, 355, 369, 494, 543, 544
PspPPI	RGGWCCY	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	1152
PstNI	CAGNNNCTG	1 cut(s)	1309
PsuI	RGATCY	2 cut(s)	777, 1678
PvuII	CAGCTG	2 cut(s)	828, 1147
RruI	TCGCGA	1 cut(s)	1365
RsaI	GTAC	2 cut(s)	212, 500
RsaNI	GTAC	2 cut(s)	211, 499
RseI	CAYNNNNRTG	3 cut(s)	602, 1271, 1782
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	512, 754
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	1737, 1842
Sau3AI	GATC	8 cut(s)	240, 381, 403, 777, 798, 1275, 1624, 1678
Sau96I	GGNCC	9 cut(s)	40, 63, 235, 260, 355, 369, 494, 543, 544
SchI	GAGTC	5 cut(s)	259, 614, 1031, 1079, 1793
SduI	GDGCHC	8 cut(s)	189, 512, 547, 567, 754, 918, 930, 1593
SfaNI	GCATC	1 cut(s)	1707
SfcI	CTRYAG	2 cut(s)	1148, 1810
Sfr303I	CCGCGG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	698
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	4 cut(s)	40, 355, 369, 494
SmaI	CCCGGG	2 cut(s)	45, 1658
SmiMI	CAYNNNNRTG	3 cut(s)	602, 1271, 1782
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1513
SseBI	AGGCCT	1 cut(s)	425
SspMI	CTAG	3 cut(s)	747, 1028, 1876
SstI	GAGCTC	2 cut(s)	512, 754
StuI	AGGCCT	1 cut(s)	425
StyI	CCWWGG	4 cut(s)	426, 592, 781, 1139
TaaI	ACNGT	5 cut(s)	229, 391, 871, 1301, 1811
TaiI	ACGT	6 cut(s)	195, 216, 303, 540, 656, 888
TaqI	TCGA	7 cut(s)	618, 698, 729, 801, 983, 1103, 1604
TasI	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1513
TauI	GCSGC	7 cut(s)	163, 209, 257, 955, 1654, 1733, 1830
TfiI	GAWTC	6 cut(s)	316, 436, 556, 1244, 1256, 1357
Tru1I	TTAA	2 cut(s)	1737, 1842
Tru9I	TTAA	2 cut(s)	1737, 1842
TscAI	CASTG	4 cut(s)	862, 1080, 1349, 1814
TseFI	GTSAC	7 cut(s)	198, 223, 296, 310, 385, 628, 1549
Tsp45I	GTSAC	7 cut(s)	198, 223, 296, 310, 385, 628, 1549
TspDTI	ATGAA	4 cut(s)	182, 779, 1389, 1493
TspGWI	ACGGA	2 cut(s)	486, 1691
TspMI	CCCGGG	2 cut(s)	43, 1656
TspRI	CASTG	4 cut(s)	862, 1080, 1349, 1814
Van91I	CCANNNNNTGG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	4 cut(s)	40, 355, 369, 494
VspI	ATTAAT	1 cut(s)	1842
XapI	RAATTY	3 cut(s)	713, 841, 1042
XceI	RCATGY	2 cut(s)	416, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1479
XmaI	CCCGGG	2 cut(s)	43, 1656
XmnI	GAANNNNTTC	1 cut(s)	1093
XspI	CTAG	3 cut(s)	747, 1028, 1876
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.