Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

334663 .. 336462

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCGTCGGAGGAAGATAAGATTACAAGAATCTCTATCGAACCGGAGAAGCAAACACTTCTCGATCATCACACCGAGAAACACTTCACCGCCGGAGAAATCGTACGTGACATCATCATCGGCGTCTCTGATGGTTTAACCGTTCCTTTTGCCCTCGCCGCCGGTCTCTCCGGTGCCAATGCTTCTTCTTCTATAGTCCTTACCGCTGGAATCGCCGAAGTCGCGGCCGGTGCTATCTCCATGGGACTCGGCGGGTATTTAGCGGCAAAGAGCGAAGAAGATCATTACGCGAGGGAGATGAAACGAGAACAAGAAGAGATCGTGGCCGTTCCTGAAACTGAGGCAGCTGAAGTGGCAGAGATTCTGGCACAGTACGGGATAGAGCCACATGAATATTCACCTGTAGTTAATGCTCTTCGTAAGAATCCTCAAGCTTGGCTTGATTTTATGATGAGGTTTGAGCTGGGATTAGAGAAGCCTGATCCAAAAAGAGCGTTACAAAGCGCGTTCACGATTGCAATCGCTTATGTTCTTGGCGGTTTTATACCGTTACTTCCCTACATGCTCATACCGCATGCCATGGATGCGGTAGTGGCGTCTGTGGTTATAACTCTGTTTGCGCTCTTCATATTTGGCTATGCAAAAGGGCATTTCACTGGAAGCAAGCCCCTCAGAAGTGCGTTTGAAACCGCCTTTATAGGAGCGATTGCTTCAGCTGCTGCTTTTTGTTTGGCTAAAGTTGTGCAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

250

Amino Acids

26.86

Weight (kDa)

5.17

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	35 - 245	8.4e-76	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	3 cut(s)	224, 290, 506
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	2 cut(s)	225, 324
AcuI	CTGAAG	2 cut(s)	369, 696
AcyI	GRCGYC	2 cut(s)	123, 596
AfaI	GTAC	2 cut(s)	105, 374
AgsI	TTSAA	1 cut(s)	686
AluBI	AGCT	4 cut(s)	347, 434, 463, 716
AluI	AGCT	4 cut(s)	347, 434, 463, 716
Alw26I	GTCTC	2 cut(s)	130, 170
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	225, 324
ApeKI	GCWGC	3 cut(s)	344, 716, 719
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	506, 622
AsuHPI	GGTGA	2 cut(s)	79, 390
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	356, 703, 706
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	130, 170
BfmI	CTRYAG	2 cut(s)	192, 402
BisI	GCNGC	6 cut(s)	159, 225, 264, 345, 717, 720
BlsI	GCNGC	6 cut(s)	160, 226, 265, 346, 718, 721
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	123, 596
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	240, 579
BsaWI	WCCGGW	2 cut(s)	43, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse118I	RCCGGY	2 cut(s)	161, 227
Bse1I	ACTGG	1 cut(s)	661
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	240, 579
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	330, 685
BseNI	ACTGG	1 cut(s)	661
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	356, 703, 706
BseYI	CCCAGC	1 cut(s)	463
Bsh1236I	CGCG	3 cut(s)	224, 290, 506
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	227, 326
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	44, 93, 162, 171, 228
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	130, 170
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	227, 326
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	64, 280, 318, 481
Bsp19I	CCATGG	2 cut(s)	240, 579
BspANI	GGCC	2 cut(s)	227, 326
BspCNI	CTCAG	2 cut(s)	331, 684
BspFNI	CGCG	3 cut(s)	224, 290, 506
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	2 cut(s)	420, 629
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	161, 227
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	2 cut(s)	161, 227
BssECI	CCNNGG	2 cut(s)	240, 579
BssMI	GATC	4 cut(s)	64, 280, 318, 481
BssNI	GRCGYC	2 cut(s)	123, 596
BssT1I	CCWWGG	2 cut(s)	240, 579
Bst4CI	ACNGT	3 cut(s)	142, 372, 549
Bst6I	CTCTTC	3 cut(s)	309, 420, 629
BstACI	GRCGYC	2 cut(s)	123, 596
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	576, 665
BstDEI	CTNAG	2 cut(s)	339, 671
BstDSI	CCRYGG	2 cut(s)	240, 579
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	3 cut(s)	224, 290, 506
BstHHI	GCGC	2 cut(s)	506, 622
BstKTI	GATC	4 cut(s)	67, 283, 321, 484
BstMAI	GTCTC	2 cut(s)	130, 170
BstMBI	GATC	4 cut(s)	64, 280, 318, 481
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	9 cut(s)	158, 212, 221, 230, 353, 571, 584, 593, 716
BstNSI	RCATGY	2 cut(s)	565, 578
BstSFI	CTRYAG	2 cut(s)	192, 402
BstUI	CGCG	3 cut(s)	224, 290, 506
BstV1I	GCAGC	3 cut(s)	356, 703, 706
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	227, 326
BtgI	CCRYGG	2 cut(s)	240, 579
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	576, 665
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	2 cut(s)	506, 622
Cfr10I	RCCGGY	2 cut(s)	161, 227
CseI	GACGC	2 cut(s)	112, 585
Csp6I	GTAC	2 cut(s)	104, 373
CviAII	CATG	5 cut(s)	241, 389, 562, 575, 580
CviQI	GTAC	2 cut(s)	104, 373
DdeI	CTNAG	2 cut(s)	339, 671
DpnI	GATC	4 cut(s)	66, 282, 320, 483
DpnII	GATC	4 cut(s)	64, 280, 318, 481
EaeI	YGGCCR	2 cut(s)	225, 324
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	309, 420, 629
EarI	CTCTTC	3 cut(s)	309, 420, 629
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	240, 579
Eco31I	GGTCTC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	369, 696
EcoT14I	CCWWGG	2 cut(s)	240, 579
ErhI	CCWWGG	2 cut(s)	240, 579
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	244, 392, 565, 578, 583
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	5 cut(s)	240, 388, 561, 574, 579
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	6 cut(s)	159, 225, 264, 345, 717, 720
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	6 cut(s)	159, 225, 264, 345, 717, 720
GlaI	GCGC	2 cut(s)	505, 621
GluI	GCNGC	6 cut(s)	159, 225, 264, 345, 717, 720
GsaI	CCCAGC	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	227, 326
HapII	CCGG	5 cut(s)	44, 93, 162, 171, 228
HgaI	GACGC	2 cut(s)	112, 585
HhaI	GCGC	2 cut(s)	506, 622
Hin1I	GRCGYC	2 cut(s)	123, 596
Hin1II	CATG	5 cut(s)	244, 392, 565, 578, 583
Hin6I	GCGC	2 cut(s)	504, 620
HinP1I	GCGC	2 cut(s)	504, 620
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	5 cut(s)	30, 210, 246, 361, 424
HpaII	CCGG	5 cut(s)	44, 93, 162, 171, 228
HphI	GGTGA	2 cut(s)	79, 390
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	10, 130, 674
Hpy188III	TCNNGA	3 cut(s)	62, 332, 511
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	142, 372, 549
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	518, 641, 745
HpyF10VI	GCNNNNNNNGC	9 cut(s)	158, 212, 221, 230, 353, 571, 584, 593, 716
HpyF3I	CTNAG	2 cut(s)	339, 671
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	2 cut(s)	123, 596
Hsp92II	CATG	5 cut(s)	244, 392, 565, 578, 583
HspAI	GCGC	2 cut(s)	504, 620
Kzo9I	GATC	4 cut(s)	64, 280, 318, 481
LguI	GCTCTTC	2 cut(s)	420, 629
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	3 cut(s)	356, 703, 706
LweI	GCATC	1 cut(s)	574
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	3 cut(s)	107, 495, 549
MalI	GATC	4 cut(s)	66, 282, 320, 483
MboI	GATC	4 cut(s)	64, 280, 318, 481
MboII	GAAGA	8 cut(s)	26, 177, 180, 287, 290, 326, 407, 616
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	4, 164, 285, 334, 438, 447, 680
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	137, 408
MspA1I	CMGCKG	3 cut(s)	206, 347, 716
MspI	CCGG	5 cut(s)	44, 93, 162, 171, 228
MvnI	CGCG	3 cut(s)	224, 290, 506
MwoI	GCNNNNNNNGC	9 cut(s)	158, 212, 221, 230, 353, 571, 584, 593, 716
NcoI	CCATGG	2 cut(s)	240, 579
NdeII	GATC	4 cut(s)	64, 280, 318, 481
NlaIII	CATG	5 cut(s)	244, 392, 565, 578, 583
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	2 cut(s)	565, 578
PaeI	GCATGC	1 cut(s)	578
PciSI	GCTCTTC	2 cut(s)	420, 629
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	30, 210, 361, 424
Pfl23II	CGTACG	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	160, 226, 265, 346, 718, 721
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Ppu21I	YACGTR	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	608
PspFI	CCCAGC	1 cut(s)	463
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	719
PvuII	CAGCTG	2 cut(s)	347, 716
RsaI	GTAC	2 cut(s)	105, 374
RsaNI	GTAC	2 cut(s)	104, 373
SapI	GCTCTTC	2 cut(s)	420, 629
SaqAI	TTAA	2 cut(s)	137, 408
SatI	GCNGC	6 cut(s)	159, 225, 264, 345, 717, 720
Sau3AI	GATC	4 cut(s)	64, 280, 318, 481
SchI	GAGTC	1 cut(s)	240
SetI	ASST	7 cut(s)	109, 349, 403, 436, 458, 465, 718
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	2 cut(s)	192, 402
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	578
SspI	AATATT	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	240, 579
TaaI	ACNGT	3 cut(s)	142, 372, 549
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	39, 63
TauI	GCSGC	3 cut(s)	161, 227, 266
TfiI	GAWTC	4 cut(s)	30, 210, 361, 424
Tru1I	TTAA	2 cut(s)	137, 408
Tru9I	TTAA	2 cut(s)	137, 408
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	344, 716, 719
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	314, 405, 616
TspRI	CASTG	1 cut(s)	661
XceI	RCATGY	2 cut(s)	565, 578
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.